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<prev • 256 results • page 1 of 9 • next >
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Linkage disequilibrium through --geno-r2 of vcftools: Adjust R squared? F-statistic and significance?
linkage disequilibrium vcftools snp written 2 days ago by Sam • 0
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122
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Merge VCF files using PLINK with repetition of the same VCF file for more than one individual
vcf plink vcftools written 4 weeks ago by sarah • 0 • updated 9 days ago by Biostar ♦♦ 20
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145
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help with vcftools filtering on individuals
vcftools written 12 days ago by schisler • 10
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489
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Strange behavior of vcf-compare
vcf vcfcompare vcftools written 16 months ago by modi2020 • 10 • updated 4 weeks ago by Biostar ♦♦ 20
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Trouble With Tabix In Using Vcf Tools
tabix vcftools linux written 4.1 years ago by C00101 • 0 • updated 4 weeks ago by bioscientist122 • 0
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Is the heterozygosity flag (--het) in vcftools calculate observed and expected heterozygosity?
vcf file vcftools --het written 6 weeks ago by ahmedaljumiliy • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 98k
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How to switch to an older version of vcftools
software error vcftools written 3 months ago by dpr331 • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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Is the DGRP data phased?
vcf next-gen vcftools dgrp written 3 months ago by mufernando • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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How to plot VCF missingness per sample (.imiss) and per variant (.lmiss) in python?
vcf qc plink vcftools written 6 months ago by William • 3.9k • updated 7 weeks ago by Biostar ♦♦ 20
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277
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1
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How to extract only TUMOR variants from vcf file?
vcf vcftools written 8 weeks ago by Fill • 70
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420
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VCF Merge using Vcf Tools
variant depth vcftools written 9 months ago by ankur.c • 0 • updated 8 weeks ago by genomax ♦ 33k
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186
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How Add data in ref column in vcf file
genome vcf vcftools snp written 9 weeks ago by misbahabas • 30 • updated 8 weeks ago by aays • 60
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174
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Help regarding variant filtration and variant density calculation
bedtools variant filtration snpdensity vcftools written 9 weeks ago by mirza • 80
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1
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260
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1
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Vcftools gives error when extracting snps
vcftools snp written 9 weeks ago by BAGeno • 20
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249
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vcfbreakmulti Broken VCF header, no column names?
vcftools written 12 weeks ago by vpnfatrsqlbahzpchbvi • 0
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1
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272
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1
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Filter SNPs on depth
filter depth vcftools snp mindp written 12 weeks ago by Covux • 10 • updated 12 weeks ago by Istvan Albert ♦♦ 73k
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327
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1
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How to view the contents and header of a Vcf file in linux using VCFTOOLS
1000 genomes vcftools written 12 weeks ago by sridevi • 0 • updated 12 weeks ago by WouterDeCoster ♦ 21k
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Comparing Genomes with VCFtools
genome vcftools written 3 months ago by marcus.grewal • 0
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271
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1
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 3 months ago by ciemanek • 20 • updated 3 months ago by Brian Bushnell ♦ 14k
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Vcf Tools Error
tabix vcftools written 4.2 years ago by tpeters1213 • 0 • updated 3 months ago by Biostar ♦♦ 20
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354
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1
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How to convert vcf file into data matrix for machine-learning?
vcf bcf machine-learning vcftools genotype written 4 months ago by jespinoz • 0
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1
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149
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1
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help with Merging vcf files
vcf-merg vcftools written 3 months ago by abdulbenissa • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 98k
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192
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"Error: --recode 23 cannot be used with multi-character allele names." when converting VCF to 23andme
vcftools plink1.9 written 3 months ago by beneficii • 20
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convert vcf file (based using beagle) to ldhat input files when I have 6000 "chromosomes" (scaffolds)
vcftools ldhat format written 4 months ago by jc_jones • 0
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1
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238
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1
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Regular Expression help for (bcf/vcf)tools filter manipulation
bcftools vcftools written 4 months ago by morovatunc • 360 • updated 4 months ago by Petr Ponomarenko • 2.4k
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402
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What's the difference between weighted Fst and mean Fst from VCFtools?
vcftools weighted fst mean fst written 4 months ago by coly_fu • 0
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1
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316
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1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 5 months ago by feng9oly • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
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1
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251
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1
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Convert VCF 012 format to raw genotype data
snps vcftools genotypes written 5 months ago by mike1234 • 10
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1
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177
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1
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Problem with vcftools comparison, results dont make sense
comparison vcftools snp written 5 months ago by rafa.rios.50 • 40
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333
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1
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Vcf-compare two multi-sample vcf files
vcftools vcf-compare written 5 months ago by AB • 60 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
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