Showing: vcftoolsreset
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Merge vcf files from Multiple Samples
vcf vcftools written 5.0 years ago by Ron920 • updated 15 days ago by Biostar ♦♦ 20
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5 follow
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How to add trio information to VCF or PED format (to compute Mendel error in Plink)
plink snp vcftools written 2.1 years ago by olavur70 • updated 17 days ago by Biostar ♦♦ 20
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How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools written 21 days ago by serpalma.v20 • updated 20 days ago by h.mon24k
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 3.5 years ago by jfertaj90 • updated 4 weeks ago by zx87547.1k
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140
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VCFTOOLS won't read my vcf file
vcf vcftools snp written 4 weeks ago by wruzic10
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175
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Splitting .vcf file
wgs vcftools written 6 weeks ago by F3.4k
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551
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How to extract proxy SNPs using 1000G vcf for a list of SNPs
1000g proxy vcftools snp plink written 7 weeks ago by janhuang.cn140 • updated 7 weeks ago by chrchang5234.9k
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.6 years ago by roll260 • updated 7 weeks ago by hakimeazarafra0
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Allele frequency visualization
R stacks vcftools snp written 4 months ago by jaafari.omid40 • updated 7 weeks ago by msimmer92150
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4
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238
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VCF file filtration
vcf wgs bcftools vcftools snp written 9 weeks ago by jaafari.omid40
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vcftool negative relatedness values for family members
pedigree kinship qc vcftools written 2.8 years ago by marcusanaymik10 • updated 9 weeks ago by Biostar ♦♦ 20
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 24 months ago by feng9oly0 • updated 3 months ago by Biostar ♦♦ 20
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 10 months ago by gradstudentNew10 • updated 3 months ago by zx87547.1k
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225
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1
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VCFtools calculate SNP density
vcf bioinformatics snp density vcftools snp written 4 months ago by christinachavez0 • updated 4 months ago by ashishbansal123000
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.7 years ago by Lylthera0 • updated 4 months ago by zx87547.1k
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Count variants between two samples within a multi-sample VCF
vcf vcftools written 4 months ago by rc1695560 • updated 4 months ago by chrchang5234.9k
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split vcf by individual
vcf vcf-subset vcftools snp written 4 months ago by sonia.olaechea60 • updated 4 months ago by Paul1.3k
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How to extract sample id using bcftools or vcftools
vcf bcftools vcftools snp written 4.0 years ago by xinhui.wang160 • updated 5 months ago by zx87547.1k
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11k
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12 follow
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1.2k
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Split a large VCF into user defined regions
vcf vcftools sequencing written 2.5 years ago by zelia.worman0 • updated 5 months ago by zx87547.1k
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5 follow
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586
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