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<prev • 360 results • page 1 of 12 • next >
1
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82
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1
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Merging multiple .ped/.map files for PLINK analisys purposes
plink snp vcftools written 16 days ago by giusdalt95 • 0 • updated 15 days ago by chrchang523 ♦ 7.4k
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0
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90
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0
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How to compute Pi using VCFtools
pi vcftools statistics written 23 days ago by yolek64754 • 30
0
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1
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123
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1
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vcftools not outputting any file, and not giving any error message
vcftools written 4 weeks ago by dec986 • 230
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0
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133
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0
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Converting VCF files into bcftools style region co-ordinates
gwas sequence bcftools vcftools sequencing written 5 weeks ago by Negin • 0
4
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2
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5.4k
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2
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Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
vcf vcftools written 7.5 years ago by Sheila • 330 • updated 6 weeks ago by Biostar ♦♦ 20
1
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143
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1
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bcftools to remove non-variants sites
vcf filter bctools vcftools snp written 9 weeks ago by shiy05 • 0
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1.3k
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0
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--max-alleles argument not recognized
vcftools snp written 5.7 years ago by boris • 0 • updated 11 weeks ago by Biostar ♦♦ 20
0
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1
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285
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1
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vcftools --fst-window- problems
fst-window vcftools written 4 months ago by florycamacho305 • 0 • updated 3 months ago by fu_entomology • 20
1
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0
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223
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Identifying Private SNPs between multi sample vcf files.
bcftools bcftools isec vcftools vcf-compare written 3 months ago by nataliagru1 • 50
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230
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0
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To remove variants that encode for PE-PPE proteins from .vcf file
bedtools annovar vcftools written 4 months ago by kumari.indu31 • 0
2
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1
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283
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1
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VCF tools --freq output file
vcftools allelefrequency fileformat written 4 months ago by Inquisitive8995 • 180 • updated 4 months ago by Kevin Blighe ♦ 68k
2
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1
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255
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1
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vcftools discrepancy in mean depth values per site
vcf depth coverage snp vcftools written 5 months ago by oscarmirap • 10 • updated 5 months ago by Kevin Blighe ♦ 68k
1
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1
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206
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1
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Vcftools order of operations for filtering?
genome vcftools snp written 5 months ago by aj • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 131k
1
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1
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216
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1
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extracting SNPs from .vcf file along with CHR and POS
vcftools written 5 months ago by anamaria • 110
4
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1
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338
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1
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How to filter a VCF file with a list of CHR or contig IDs?
vcf chromosome contigs vcftools awk written 5 months ago by lexic2713 • 10 • updated 5 months ago by drkennetz • 510
1
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1
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1.4k
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1
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From VCF, create only .tfam file
vcf vcftools tped tfam plink written 4.9 years ago by mpauper • 20 • updated 5 months ago by chrchang523 ♦ 7.4k
1
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0
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206
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0
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Vcf filtering GT for between sample variants only
vcf heterozygous vcftools snp written 5 months ago by kadamek49 • 0
10
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4
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26k
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5 follow
4
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Help On Merging Vcf Files By Using Vcftools
vcf merge vcftools written 9.9 years ago by Jianfengmao • 310 • updated 6 months ago by Biostar ♦♦ 20
1
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0
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216
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0
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Relatedness check for trio samples (Proband/Parents)
vcf relatedness next-gen vcftools snp written 6 months ago by kaur.supan13 • 0
1
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1
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284
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1
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remove listed singletons from vcftools output
genome next-gen vcftools sequencing written 7 months ago by QPaps04 • 10
0
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0
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193
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0
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Filter SNPs for DP using mean + 2*SD
filter next-gen vcftools snp depth written 7 months ago by QPaps04 • 10
2
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2
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2.3k
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2
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Split a large VCF into user defined regions
vcf vcftools sequencing written 4.2 years ago by zelia.worman • 0 • updated 8 months ago by nmzt43 • 0
0
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1
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287
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1
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How to pass a variable to vcftools --weir-fst-pop
fst vcftools bash written 8 months ago by gary.napier • 20
1
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1
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370
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1
answer
Filtering VCF file by INFO flag
vcf vcftools written 9 months ago by zhamouda • 0
8
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3
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5.7k
views
9 follow
3
answers
SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 3.7 years ago by Dhana • 80 • updated 9 months ago by cannilay • 20
2
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2
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321
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2
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vcftools separate only selected chrom allocation from 4gb vcf file
vcf filter allocation vcftools written 10 months ago by dev.info.2021 • 0
0
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1
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614
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1
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How to filter SNP and Indel under these criteria?
indel vcffilter freebayes vcftools snp written 12 months ago by r00628112 • 10 • updated 10 months ago by devarora • 240
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293
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0
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bcftools error when re-annotating the FILTER column of a VCF when multiple ";" delimited FILTER values exist
vcf bcftools vcftools written 11 months ago by curious • 460
0
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317
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0
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How to calculate linkage disequilibrium (LD) with only two genomes?
linkage disequilibrium plink ld vcftools written 11 months ago by KL_STKLBK • 0
1
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0
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495
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0
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vcftools not ouputting log file when run from perl
vcf vcftools written 11 months ago by dec986 • 230
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