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<prev • 311 results • page 1 of 11 • next >
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 16 hours ago by jon.klonowski • 0
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How to turn current VCF into a VCF with genotype and rsID in same file
vcf bcftools vcftools written 13 days ago by austinkjensen5 • 0 • updated 13 days ago by Kevin Blighe ♦ 41k
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2
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Merge vcf files from Multiple Samples
vcf vcftools written 5.0 years ago by Ron • 920 • updated 15 days ago by Biostar ♦♦ 20
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5 follow
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How to add trio information to VCF or PED format (to compute Mendel error in Plink)
plink snp vcftools written 2.1 years ago by olavur • 70 • updated 17 days ago by Biostar ♦♦ 20
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How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools written 21 days ago by serpalma.v • 20 • updated 20 days ago by h.mon ♦ 24k
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1
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 3.5 years ago by jfertaj • 90 • updated 4 weeks ago by zx8754 ♦ 7.1k
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140
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Filtering SNPS by minimum LD value in bcftools?
vcf bcftools vcftools ld r2 written 4 weeks ago by RNAseqer • 40
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139
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1
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VCFTOOLS won't read my vcf file
vcf vcftools snp written 4 weeks ago by wruzic1 • 0
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175
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Splitting .vcf file
wgs vcftools written 6 weeks ago by F • 3.4k
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551
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1
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How to extract proxy SNPs using 1000G vcf for a list of SNPs
1000g proxy vcftools snp plink written 7 weeks ago by janhuang.cn • 140 • updated 7 weeks ago by chrchang523 ♦ 4.9k
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22k
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2
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.6 years ago by roll • 260 • updated 7 weeks ago by hakimeazarafra • 0
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379
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2
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Allele frequency visualization
R stacks vcftools snp written 4 months ago by jaafari.omid • 40 • updated 7 weeks ago by msimmer92 • 150
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2
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 13 months ago by JSEM • 20 • updated 8 weeks ago by GK1610 • 60
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238
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VCF file filtration
vcf wgs bcftools vcftools snp written 9 weeks ago by jaafari.omid • 40
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269
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How vcftools calculate Fst value?
populations fst vcftools written 10 weeks ago by seta • 1.1k
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1.1k
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0
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vcftool negative relatedness values for family members
pedigree kinship qc vcftools written 2.8 years ago by marcusanaymik • 10 • updated 9 weeks ago by Biostar ♦♦ 20
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"Error: --recode 23 cannot be used with multi-character allele names." when converting VCF to 23andme
vcftools plink1.9 written 23 months ago by beneficii • 40 • updated 12 weeks ago by nuria.mauri • 0
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5 follow
1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 24 months ago by feng9oly • 0 • updated 3 months ago by Biostar ♦♦ 20
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1.1k
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1
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 10 months ago by gradstudentNew • 10 • updated 3 months ago by zx8754 ♦ 7.1k
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225
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1
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Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 3 months ago by miles.thorburn • 80
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1
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406
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1
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VCFtools calculate SNP density
vcf bioinformatics snp density vcftools snp written 4 months ago by christinachavez • 0 • updated 4 months ago by ashishbansal12300 • 0
1
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1
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2.2k
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1
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Is the heterozygosity flag (--het) in vcftools calculate observed and expected heterozygosity?
vcf vcftools written 20 months ago by ahmedaljumiliy • 10 • updated 4 months ago by Kevin Blighe ♦ 41k
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1.9k
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2
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.7 years ago by Lylthera • 0 • updated 4 months ago by zx8754 ♦ 7.1k
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207
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2
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Count variants between two samples within a multi-sample VCF
vcf vcftools written 4 months ago by rc16955 • 60 • updated 4 months ago by chrchang523 ♦ 4.9k
4
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2
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231
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2
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split vcf by individual
vcf vcf-subset vcftools snp written 4 months ago by sonia.olaechea • 60 • updated 4 months ago by Paul • 1.3k
14
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12k
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2
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How to extract sample id using bcftools or vcftools
vcf bcftools vcftools snp written 4.0 years ago by xinhui.wang • 160 • updated 5 months ago by zx8754 ♦ 7.1k
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11k
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12 follow
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How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
vcftools mpileup written 7.2 years ago by Deniz • 50 • updated 5 months ago by zx8754 ♦ 7.1k
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1.2k
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2
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Split a large VCF into user defined regions
vcf vcftools sequencing written 2.5 years ago by zelia.worman • 0 • updated 5 months ago by zx8754 ♦ 7.1k
7
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2
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5.7k
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5 follow
2
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Most effective way to merge individual VCF files into VCF files merged by chromosome
vcf vcfmerge merge vcftools plinkseq written 4.9 years ago by vlaufer • 260 • updated 5 months ago by Biostar ♦♦ 20
2
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2
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586
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2
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vcftools --TajimaD in sliding windows
snp vcftools tajima's d written 5 months ago by sonia.olaechea • 60
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