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<prev • 368 results • page 1 of 13 • next >
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138
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Multiple alleles in REF and ALT in VCF file
vcf indel allele bcftools vcftools written 6 weeks ago by Volka • 120 • updated 7 days ago by Biostar ♦♦ 20
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2
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167
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2
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Merge two vcf's, keep only intersection of REF/ALT alleles
vcf intersection merge bcftools vcftools written 6 weeks ago by just learning • 0 • updated 17 days ago by Elucidata • 120
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1
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154
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1
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Adding SNP ID to original VCF file
plink snp vcftools written 4 weeks ago by rs146 • 0 • updated 4 weeks ago by chrchang523 ♦ 7.7k
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0
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126
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How to perform relatedness across multiple trio cohort ?
trio relatedness vcftools written 5 weeks ago by dare_devil • 1.4k
4
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1
answer
5.5k
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1
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VCFtools not filtering VCF file by positions
vcf vcftools snp written 5.4 years ago by devenvyas • 670 • updated 7 weeks ago by mmunsanbioinfo • 0
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123
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--max-missing filter in vcftools removes most of my SNP data
genome missing max vcftools snp written 8 weeks ago by truebeliever24 • 20
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209
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Different estimates of nucleotide diversity (pi) from two pipelines: pixy vs vcftools
pixy vcftools nucleotide diversity written 9 weeks ago by nitinra • 10
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0
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238
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0
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Filter max-missing multiple time removes more SNPs
linux vcftools snp filtering sequencing written 11 weeks ago by QPaps04 • 30
2
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1
answer
302
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1
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Failed to open plain.vcf: unknown file type
bgzip vcf.gz bcftools vcftools written 3 months ago by obidobi • 30 • updated 3 months ago by Jorge Amigo ♦ 12k
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1
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212
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1
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Merging multiple .ped/.map files for PLINK analisys purposes
plink snp vcftools written 3 months ago by giusdalt95 • 0 • updated 3 months ago by chrchang523 ♦ 7.7k
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0
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236
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0
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How to compute Pi using VCFtools
pi vcftools statistics written 3 months ago by yolek64754 • 30
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1
answer
207
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1
answer
vcftools not outputting any file, and not giving any error message
vcftools written 4 months ago by dec986 • 260
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0
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185
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0
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Converting VCF files into bcftools style region co-ordinates
gwas sequence bcftools vcftools sequencing written 4 months ago by Negin • 0
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2
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5.5k
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2
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Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
vcf vcftools written 7.7 years ago by Sheila • 330 • updated 4 months ago by Biostar ♦♦ 20
1
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1
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317
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1
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bcftools to remove non-variants sites
vcf filter bctools vcftools snp written 5 months ago by shiy05 • 0
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1.4k
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0
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--max-alleles argument not recognized
vcftools snp written 5.9 years ago by boris • 0 • updated 5 months ago by Biostar ♦♦ 20
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1
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478
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1
answer
vcftools --fst-window- problems
fst-window vcftools written 7 months ago by florycamacho305 • 0 • updated 6 months ago by fu_entomology • 20
1
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0
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359
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0
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Identifying Private SNPs between multi sample vcf files.
bcftools bcftools isec vcftools vcf-compare written 6 months ago by nataliagru1 • 60
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0
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293
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0
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To remove variants that encode for PE-PPE proteins from .vcf file
bedtools annovar vcftools written 7 months ago by kumari.indu31 • 0
2
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1
answer
436
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1
answer
VCF tools --freq output file
vcftools allelefrequency fileformat written 8 months ago by Inquisitive8995 • 190 • updated 8 months ago by Kevin Blighe ♦ 71k
2
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1
answer
400
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1
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vcftools discrepancy in mean depth values per site
vcf depth coverage snp vcftools written 8 months ago by oscarmirap • 10 • updated 8 months ago by Kevin Blighe ♦ 71k
1
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1
answer
323
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1
answer
Vcftools order of operations for filtering?
genome vcftools snp written 8 months ago by aj • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 134k
1
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1
answer
345
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1
answer
extracting SNPs from .vcf file along with CHR and POS
vcftools written 8 months ago by anamaria • 140
4
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1
answer
524
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1
answer
How to filter a VCF file with a list of CHR or contig IDs?
vcf chromosome contigs vcftools awk written 8 months ago by acoles • 10 • updated 8 months ago by drkennetz • 510
1
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1
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1.5k
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1
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From VCF, create only .tfam file
vcf vcftools tped tfam plink written 5.1 years ago by mpauper • 20 • updated 8 months ago by chrchang523 ♦ 7.7k
1
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271
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0
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Vcf filtering GT for between sample variants only
vcf heterozygous vcftools snp written 9 months ago by kadamek49 • 0
10
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4
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27k
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5 follow
4
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Help On Merging Vcf Files By Using Vcftools
vcf merge vcftools written 10.2 years ago by Jianfengmao • 310 • updated 9 months ago by Biostar ♦♦ 20
1
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0
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290
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0
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Relatedness check for trio samples (Proband/Parents)
vcf relatedness next-gen vcftools snp written 9 months ago by kaur.supan13 • 0
2
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1
answer
421
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1
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remove listed singletons from vcftools output
genome next-gen vcftools sequencing written 10 months ago by QPaps04 • 30
0
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0
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250
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0
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Filter SNPs for DP using mean + 2*SD
filter next-gen vcftools snp depth written 10 months ago by QPaps04 • 30
<prev • 368 results • page 1 of 13 • next >
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