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<prev • 295 results • page 1 of 10 • next >
2
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110
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vcftools --TajimaD in sliding windows
snp vcftools tajima's d written 8 days ago by sonia.olaechea • 20
3
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0
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90
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0
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Tutorial: Fast LD computation from VCF files using tomahawk
bcftools ld vcf tutorial snp vcftools written 7 days ago by rmf • 440
4
votes
1
answer
159
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1
answer
How do I use vcftools to filter by variant ID OR variant position?
vcftools written 11 days ago by jwhite007 • 10 • updated 11 days ago by Pierre Lindenbaum ♦ 114k
0
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0
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77
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0
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NCBI Remap Issue
genome gwas remapping vcftools snp written 15 days ago by f.abbondanza94 • 0
1
vote
1
answer
218
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1
answer
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
vcf vcftools written 4 weeks ago by mayara.salvian • 10 • updated 4 weeks ago by Pierre Lindenbaum ♦ 114k
1
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0
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191
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0
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vcftools vcf-merge error
vcf-merge vcftools written 5 weeks ago by biogirl • 150
2
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1
answer
197
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1
answer
VCFtools version for LD calculations specifying bin size
vcftools ld written 8 weeks ago by Stephanie • 20 • updated 7 weeks ago by Kevin Blighe ♦ 31k
1
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1
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1.2k
views
1
answer
using vcftools to add gene name to vcf file
vcftools written 2.7 years ago by cmccabe • 170 • updated 8 weeks ago by RamRS ♦ 19k
1
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0
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1.0k
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0
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add gene name from bed file to vcf in vcftools
vcftools written 2.7 years ago by cmccabe • 170 • updated 8 weeks ago by RamRS ♦ 19k
1
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1
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202
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1
answer
bcftools: DP filter based on chromosome and sex
wgs pyvcf bcftools samtools vcftools written 8 weeks ago by bsmith030465 • 100 • updated 8 weeks ago by Pierre Lindenbaum ♦ 114k
0
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1
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178
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1
answer
Merging variant replicates rather than filtering
gwas plink vcftools written 10 weeks ago by dylkot • 0 • updated 10 weeks ago by chrchang523 ♦ 4.2k
6
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5
answers
4.5k
views
5
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.3 years ago by mmagoo6 • 50 • updated 11 weeks ago by natalia.han • 0
5
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2
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288
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2
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VCFtools. Get rid of DS:GP phased genotypes while keeping GT and remaining fields
vcftools written 3 months ago by Mr Locuace • 80
3
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1
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1.2k
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5 follow
1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 18 months ago by feng9oly • 0 • updated 3 months ago by ms.smithmark299 • 0
3
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2
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2.2k
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2
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Identifying private and shared SNPs using VCFtools
snps vcftools written 2.4 years ago by outlier95 • 10 • updated 3 months ago by Jorge Amigo ♦ 11k
0
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0
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207
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0
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How to add sample name to the VCF files
vcf lofreq bcftools plink vcftools written 3 months ago by sm.hashemin • 60
0
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0
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1.5k
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0
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Some Non-Variant Positions Obtained When Using Bcftools With -V Option. Any Idea Why This Happen?
vcf bcftools vcftools written 4.7 years ago by dapregi • 50 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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157
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0
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Strange FST values
plink vcftools fst written 3 months ago by hdtms • 20
3
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1
answer
255
views
1
answer
VCF files-Keep all alternative alleles
vcf bcftools samtools vcftools snp written 4 months ago by juara • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 114k
47
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7
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31k
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18 follow
7
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How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 6.3 years ago by Matt W • 230 • updated 4 months ago by ATpoint ♦ 9.1k
6
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1
answer
322
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5 follow
1
answer
install VCFtools on Ubuntu 18
ubuntu vcftools written 4 months ago by marongiu.luigi • 330 • updated 4 months ago by dovi • 60
1
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1
answer
176
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1
answer
How To Split Vcf Files
vcf vcftools written 4 months ago by mayara_salvian • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 114k
4
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1
answer
414
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1
answer
Remove columns from the VCF file using vcftools
vcftools written 4 months ago by mayara_salvian • 0 • updated 4 months ago by genomax ♦ 58k
0
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0
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433
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0
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Fst calculation with VCFtools
pooled vcftools fst written 4 months ago by Dracaena • 20
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2
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3.8k
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2
answers
Problems With Installing Vcftools On Ubuntu
vcftools written 6.3 years ago by aghili.babak • 70 • updated 4 months ago by Biostar ♦♦ 20
2
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1
answer
555
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1
answer
Extracting certain columns from VCF file
vcf exome question vcftools genotype written 5 months ago by gradstudentNew • 10 • updated 5 months ago by Kevin Blighe ♦ 31k
12
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0
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939
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Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking for family relationships a priori?
vcf fam gatk vcftools plink written 6 months ago by gaelgarcia • 100
2
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0
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293
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6 follow
0
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VCF SNP analysis
R vcftools snp written 6 months ago by marion.ryan • 20
0
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0
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137
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0
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i have an overlap between my reference and non-reference sample !
vcftools written 6 months ago by nour.hadjz • 0
4
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1
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3.6k
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1
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Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 4.1 years ago by axelwilhelm • 100 • updated 6 months ago by Biostar ♦♦ 20
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