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<prev • 284 results • page 1 of 10 • next >
0
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60
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Strange FST values
plink vcftools fst written 3 days ago by hdtms • 20
3
votes
1
answer
103
views
1
answer
VCF files-Keep all alternative alleles
vcf bcftools samtools vcftools snp written 5 days ago by juara • 10 • updated 5 days ago by Pierre Lindenbaum ♦ 110k
45
votes
7
answers
29k
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16 follow
7
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How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 6.0 years ago by Matt W • 210 • updated 8 days ago by ATpoint • 5.7k
6
votes
1
answer
106
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5 follow
1
answer
install VCFtools on Ubuntu 18
ubuntu vcftools written 8 days ago by marongiu.luigi • 210 • updated 8 days ago by dovi • 60
1
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1
answer
101
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1
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How To Split Vcf Files
vcf vcftools written 4 weeks ago by mayara_salvian • 0 • updated 4 weeks ago by Pierre Lindenbaum ♦ 110k
4
votes
1
answer
147
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1
answer
Remove columns from the VCF file using vcftools
vcftools written 4 weeks ago by mayara_salvian • 0 • updated 4 weeks ago by genomax ♦ 52k
0
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0
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106
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0
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Fst calculation with VCFtools
pooled vcftools fst written 4 weeks ago by Dracaena • 0
9
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2
answers
3.6k
views
2
answers
Problems With Installing Vcftools On Ubuntu
vcftools written 6.0 years ago by aghili.babak • 70 • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
225
views
1
answer
Extracting certain columns from VCF file
vcf exome question vcftools genotype written 7 weeks ago by gradstudentNew • 10 • updated 7 weeks ago by Kevin Blighe ♦ 24k
12
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0
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374
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0
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Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking for family relationships a priori?
vcf fam gatk vcftools plink written 10 weeks ago by gaelgarcia • 100
2
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0
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201
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6 follow
0
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VCF SNP analysis
R vcftools snp written 9 weeks ago by marion.ryan • 10
0
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0
answers
95
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0
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i have an overlap between my reference and non-reference sample !
vcftools written 9 weeks ago by nour.hadjz • 0
4
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1
answer
3.3k
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1
answer
Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 3.8 years ago by axelwilhelm • 100 • updated 10 weeks ago by Biostar ♦♦ 20
1
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1
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229
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1
answer
Extracting multiple regions of interest with vcftools
vcftools written 3 months ago by someler • 0 • updated 11 weeks ago by Biostar ♦♦ 20
1
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0
answers
188
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0
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VCF allele frequency is not sensible
vcf allele frequencies vcftools plink written 11 weeks ago by wrab425 • 10
2
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1
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1.1k
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1
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Set Difference in VCF Files
vcf vcftools written 2.4 years ago by andrew.j.skelton73 ♦ 5.1k • updated 3 months ago by Biostar ♦♦ 20
4
votes
1
answer
322
views
1
answer
Identifying Heterozygous Variants in VCF file using vcftools or bcftools
heterozygous bcftools vcftools written 3 months ago by oars • 110 • updated 3 months ago by Kevin Blighe ♦ 24k
3
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1
answer
283
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1
answer
vcftools: unwanted filtering
vcftools snp written 4 months ago by Molly_K • 20
0
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1
answer
492
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1
answer
vcftools nucleotide diversity statistic (pi)
vcftools written 4 months ago by modi2020 • 20 • updated 4 months ago by caw5cv • 0
5
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2
answers
1.8k
views
5 follow
2
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SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 16 months ago by Dhana • 60 • updated 4 months ago by Leandro Lima • 890
1
vote
1
answer
308
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1
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 4 months ago by JSEM • 20
0
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1
answer
722
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1
answer
Using vcftools to filter SNPs by a linkage disequilibrium (r2) threshold
vcftools written 5 months ago by shyamie • 0 • updated 5 months ago by Kevin Blighe ♦ 24k
15
votes
5
answers
2.3k
views
5
answers
Remove positions that are non-variant in a subset of samples from a vcf file
vcf bcftools vcftools genotype filtering written 24 months ago by Aliaksei Holik • 130 • updated 5 months ago by maduh17 • 10
8
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0
answers
378
views
0
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Getting nan value in vcftool relatedness command?
relatedness vcftools written 5 months ago by Sharon • 340
4
votes
1
answer
2.1k
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1
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loading plink format (generated by vcftools) file into Haploview
genome tabix plink haploview vcftools written 3.2 years ago by ernesto.lowy • 10 • updated 5 months ago by Christopher Walker • 20
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2
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2.1k
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2
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Detecting outlier loci from pairwise Fst values
outlier fst vcftools written 3.1 years ago by Earendil • 10 • updated 5 months ago by Shangzhe Zhang • 0
1
vote
1
answer
267
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1
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vcftools/ plink conserve phase information
phase information haplotype plink vcftools written 5 months ago by Wietje • 150 • updated 5 months ago by chrchang523 ♦ 3.6k
0
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1
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315
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1
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vcftools --freq output always zero
allele vcftools written 6 months ago by vinvan • 10 • updated 6 months ago by Kevin Blighe ♦ 24k
1
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2
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927
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2
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Vcf-compare two multi-sample vcf files
vcftools vcf-compare written 15 months ago by AB • 90 • updated 6 months ago by maduh17 • 10
0
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1
answer
410
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1
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How to update the INFO field of VCF after merging, subsetting?
vcf genome merge vcftools info written 6 months ago by kirannbishwa01 • 810 • updated 6 months ago by jd10.work • 0
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