Showing: vcftoolsreset
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4
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 21 months ago by feng9oly0 • updated 6 days ago by Biostar ♦♦ 20
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779
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 7 months ago by gradstudentNew10 • updated 13 days ago by zx87546.2k
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149
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0
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VCFtools calculate SNP density
vcf bioinformatics snp density vcftools snp written 6 weeks ago by christinachavez0 • updated 4 weeks ago by ashishbansal123000
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vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.4 years ago by Lylthera0 • updated 5 weeks ago by zx87546.2k
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148
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Allele frequency visualization
R stacks vcftools snp written 5 weeks ago by jaafari.omid0 • updated 5 weeks ago by zx87546.2k
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145
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Count variants between two samples within a multi-sample VCF
vcf vcftools written 8 weeks ago by rc1695550 • updated 8 weeks ago by chrchang5234.4k
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138
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split vcf by individual
vcf vcf-subset vcftools snp written 8 weeks ago by sonia.olaechea50 • updated 8 weeks ago by Paul1.2k
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How to extract sample id using bcftools or vcftools
vcf bcftools vcftools snp written 3.8 years ago by xinhui.wang150 • updated 8 weeks ago by zx87546.2k
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.3 years ago by roll240 • updated 9 weeks ago by zx87546.2k
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12 follow
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Split a large VCF into user defined regions
vcf vcftools sequencing written 2.3 years ago by zelia.worman0 • updated 9 weeks ago by zx87546.2k
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How do I use vcftools to filter by variant ID OR variant position?
vcftools written 11 weeks ago by jwhite00710 • updated 11 weeks ago by Pierre Lindenbaum116k
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392
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280
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vcftools vcf-merge error
vcf-merge vcftools written 3 months ago by biogirl150
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395
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1
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VCFtools version for LD calculations specifying bin size
vcftools ld written 4 months ago by Stephanie30 • updated 4 months ago by Kevin Blighe35k
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using vcftools to add gene name to vcf file
vcftools written 2.9 years ago by cmccabe170 • updated 4 months ago by RamRS20k
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add gene name from bed file to vcf in vcftools
vcftools written 2.9 years ago by cmccabe170 • updated 4 months ago by RamRS20k
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309
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1
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bcftools: DP filter based on chromosome and sex
wgs pyvcf bcftools samtools vcftools written 4 months ago by bsmith030465120 • updated 4 months ago by Pierre Lindenbaum116k
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Merging variant replicates rather than filtering
gwas plink vcftools written 4 months ago by dylkot0 • updated 4 months ago by chrchang5234.4k
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Identifying private and shared SNPs using VCFtools
snps vcftools written 2.6 years ago by outlier9510 • updated 5 months ago by Jorge Amigo11k
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