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<prev • 289 results • page 1 of 10 • next >
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VCFtools version for LD calculations specifying bin size
vcftools ld written 6 days ago by Stephanie • 0 • updated 2 days ago by Kevin Blighe ♦ 28k
1
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1
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1.1k
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1
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using vcftools to add gene name to vcf file
vcftools written 2.6 years ago by cmccabe • 170 • updated 8 days ago by RamRS ♦ 17k
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945
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add gene name from bed file to vcf in vcftools
vcftools written 2.6 years ago by cmccabe • 170 • updated 8 days ago by RamRS ♦ 17k
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1
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129
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1
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bcftools: DP filter based on chromosome and sex
wgs pyvcf bcftools samtools vcftools written 10 days ago by bsmith030465 • 100 • updated 10 days ago by Pierre Lindenbaum ♦ 112k
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126
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1
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Merging variant replicates rather than filtering
gwas plink vcftools written 24 days ago by dylkot • 0 • updated 24 days ago by chrchang523 ♦ 3.9k
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5
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4.2k
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.1 years ago by mmagoo6 • 50 • updated 4 weeks ago by natalia.han • 0
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2
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218
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2
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VCFtools. Get rid of DS:GP phased genotypes while keeping GT and remaining fields
vcftools written 5 weeks ago by Mr Locuace • 80
3
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1
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5 follow
1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 17 months ago by feng9oly • 0 • updated 5 weeks ago by ms.smithmark299 • 0
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2
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2.1k
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2
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Identifying private and shared SNPs using VCFtools
snps vcftools written 2.3 years ago by outlier95 • 10 • updated 6 weeks ago by Jorge Amigo ♦ 11k
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147
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How to add sample name to the VCF files
vcf lofreq bcftools plink vcftools written 6 weeks ago by sm.hashemin • 60
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Some Non-Variant Positions Obtained When Using Bcftools With -V Option. Any Idea Why This Happen?
vcf bcftools vcftools written 4.6 years ago by dapregi • 50 • updated 7 weeks ago by Biostar ♦♦ 20
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122
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Strange FST values
plink vcftools fst written 9 weeks ago by hdtms • 20
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181
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1
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VCF files-Keep all alternative alleles
vcf bcftools samtools vcftools snp written 9 weeks ago by juara • 10 • updated 9 weeks ago by Pierre Lindenbaum ♦ 112k
47
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7
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30k
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18 follow
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How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 6.2 years ago by Matt W • 230 • updated 10 weeks ago by ATpoint ♦ 7.5k
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1
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225
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5 follow
1
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install VCFtools on Ubuntu 18
ubuntu vcftools written 10 weeks ago by marongiu.luigi • 300 • updated 10 weeks ago by dovi • 60
1
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1
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150
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1
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How To Split Vcf Files
vcf vcftools written 3 months ago by mayara_salvian • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 112k
4
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1
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307
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1
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Remove columns from the VCF file using vcftools
vcftools written 3 months ago by mayara_salvian • 0 • updated 3 months ago by genomax ♦ 55k
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275
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Fst calculation with VCFtools
pooled vcftools fst written 3 months ago by Dracaena • 0
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2
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3.7k
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2
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Problems With Installing Vcftools On Ubuntu
vcftools written 6.2 years ago by aghili.babak • 70 • updated 3 months ago by Biostar ♦♦ 20
2
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1
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431
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1
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 3 months ago by gradstudentNew • 10 • updated 3 months ago by Kevin Blighe ♦ 28k
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655
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Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking for family relationships a priori?
vcf fam gatk vcftools plink written 4 months ago by gaelgarcia • 100
2
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0
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248
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6 follow
0
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VCF SNP analysis
R vcftools snp written 4 months ago by marion.ryan • 20
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120
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i have an overlap between my reference and non-reference sample !
vcftools written 4 months ago by nour.hadjz • 0
4
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1
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3.5k
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1
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Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 4.0 years ago by axelwilhelm • 100 • updated 4 months ago by Biostar ♦♦ 20
1
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1
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360
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1
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Extracting multiple regions of interest with vcftools
vcftools written 5 months ago by someler • 0 • updated 4 months ago by Biostar ♦♦ 20
1
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239
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VCF allele frequency is not sensible
vcf allele frequencies vcftools plink written 4 months ago by wrab425 • 10
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1
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Set Difference in VCF Files
vcf vcftools written 2.6 years ago by andrew.j.skelton73 ♦ 5.3k • updated 5 months ago by Biostar ♦♦ 20
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588
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1
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Identifying Heterozygous Variants in VCF file using vcftools or bcftools
heterozygous bcftools vcftools written 6 months ago by oars • 150 • updated 6 months ago by Kevin Blighe ♦ 28k
3
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1
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337
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1
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vcftools: unwanted filtering
vcftools snp written 6 months ago by Molly_K • 20
0
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1
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770
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1
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vcftools nucleotide diversity statistic (pi)
vcftools written 6 months ago by modi2020 • 20 • updated 6 months ago by caw5cv • 0
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