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<prev • 274 results • page 1 of 10 • next >
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Extracting multiple regions of interest with vcftools
vcftools written 6 days ago by someler • 0
2
votes
1
answer
985
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1
answer
Set Difference in VCF Files
vcf vcftools written 2.2 years ago by andrew.j.skelton73 ♦ 4.7k • updated 11 days ago by Biostar ♦♦ 20
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0
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172
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0
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vcftools - installing on MAC
vcf vcftools written 28 days ago by filippo.corponi • 0 • updated 28 days ago by Ram ♦ 14k
4
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1
answer
131
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1
answer
Identifying Heterozygous Variants in VCF file using vcftools or bcftools
heterozygous bcftools vcftools written 4 weeks ago by oars • 80 • updated 4 weeks ago by Kevin Blighe ♦ 17k
3
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1
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199
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1
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vcftools: unwanted filtering
vcftools snp written 6 weeks ago by Molly_K • 20
0
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1
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163
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1
answer
vcftools nucleotide diversity statistic (pi)
vcftools written 6 weeks ago by modi2020 • 20 • updated 6 weeks ago by caw5cv • 0
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2
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1.4k
views
5 follow
2
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SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 13 months ago by Dhana • 50 • updated 7 weeks ago by Leandro Lima • 880
1
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1
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149
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1
answer
Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 7 weeks ago by JSEM • 10
0
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1
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287
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1
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Using vcftools to filter SNPs by a linkage disequilibrium (r2) threshold
vcftools written 9 weeks ago by shyamie • 0 • updated 9 weeks ago by Kevin Blighe ♦ 17k
15
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5
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1.8k
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5
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Remove positions that are non-variant in a subset of samples from a vcf file
vcf bcftools vcftools genotype filtering written 21 months ago by Aliaksei Holik • 130 • updated 10 weeks ago by maduh17 • 10
8
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0
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270
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0
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Getting nan value in vcftool relatedness command?
relatedness vcftools written 11 weeks ago by Sharon • 250
4
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1
answer
1.8k
views
1
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loading plink format (generated by vcftools) file into Haploview
genome tabix plink haploview vcftools written 2.9 years ago by ernesto.lowy • 10 • updated 12 weeks ago by Christopher Walker • 20
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2
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1.9k
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2
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Detecting outlier loci from pairwise Fst values
outlier fst vcftools written 2.9 years ago by Earendil • 10 • updated 3 months ago by Shangzhe Zhang • 0
1
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1
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157
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1
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vcftools/ plink conserve phase information
phase information haplotype plink vcftools written 3 months ago by Wietje • 110 • updated 3 months ago by chrchang523 ♦ 3.1k
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1
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202
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1
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vcftools --freq output always zero
allele vcftools written 3 months ago by vinvan • 10 • updated 3 months ago by Kevin Blighe ♦ 17k
1
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2
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757
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2
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Vcf-compare two multi-sample vcf files
vcftools vcf-compare written 12 months ago by AB • 90 • updated 3 months ago by maduh17 • 10
0
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1
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258
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1
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How to update the INFO field of VCF after merging, subsetting?
vcf genome merge vcftools info written 3 months ago by kirannbishwa01 • 780 • updated 3 months ago by jd10.work • 0
4
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2
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7.2k
views
6 follow
2
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Building Snpeff Database
gatk vcftools snp written 5.7 years ago by bioinfo • 680 • updated 3 months ago by rleach • 20
0
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2
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287
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5 follow
2
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Number of SNPs in VCF
vcftools snp written 4 months ago by bwczech • 0 • updated 4 months ago by Russ • 220
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276
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0
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VCFtools command vcf-sort errors: main::error('Unknown parameter and main::parse_param
vcf-sort vcftools snp written 4 months ago by wellingtonamaral • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 106k
5
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4
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3.1k
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4
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 20 months ago by mmagoo6 • 40 • updated 4 months ago by shraddha.pai • 0
1
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1
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1.6k
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1
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Fill in missing VCF information with bcftools or vcftools or Vcf.pm
vcf annotation bcftools vcftools vcf.pm written 3.5 years ago by Lee Katz • 2.9k • updated 5 months ago by Biostar ♦♦ 20
1
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0
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396
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Problem installing vcftools
vcftools written 5 months ago by saltinimatteo98 • 0
4
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1
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1.1k
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1
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How is it possible to create a .fam file with PLINK with phenotypic data (for GEMMA)?
fam gemma plink vcftools written 16 months ago by beausoleilmo • 180 • updated 5 months ago by Kevin Blighe ♦ 17k
0
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1
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448
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1
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Recode vcf with specified reference allele
vcf vcftools plink flip reference allele written 5 months ago by wangdavid758 • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 106k
49
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4
answers
30k
views
29 follow
4
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Filtering Vcf File
vcf indel vcftools snp written 5.7 years ago by bioinfo • 680 • updated 6 months ago by DataFanatic • 70
0
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285
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Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
1000genomes tabix faidx samtools vcftools written 6 months ago by shrutishreyajha • 0
1
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409
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Linkage disequilibrium through --geno-r2 of vcftools: Adjust R squared? F-statistic and significance?
linkage disequilibrium vcftools snp written 7 months ago by Sam • 10 • updated 6 months ago by Biostar ♦♦ 20
0
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319
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News: 2nd edition: Population Genomics course in Berlin. May 14-18 2018
R news populationgenomics vcftools plink written 6 months ago by carlopecoraro2 • 650
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474
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The meaning of '0' allele frequency in vcftools output
vcf maf allele vcftools allele frequency written 7 months ago by Joel Wallenius • 10 • updated 6 months ago by Biostar ♦♦ 20
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