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<prev • 332 results • page 1 of 12 • next >
1
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Filtering out by gene and samples from VCF files
vcf gene snp vcftools gtex written 13 days ago by gprashant17 • 60 • updated 13 days ago by Pierre Lindenbaum ♦ 124k
10
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3
answers
210
views
3
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Execute commands in Bash Chunk in Rmarkdown
samtools rmarkdown vcftools rstudio written 7 weeks ago by M.O.L.S • 10
1
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0
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125
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0
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Why is VCFTools excluding so many SNPs in its Tajima D calculation?
vcftools snp population genetics written 23 days ago by Ace • 70
0
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0
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89
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0
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Add additional common INFO flags to a vcf ?
vcf info_flags vcftools snp written 5 weeks ago by nbarthelemy01 • 10
0
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0
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202
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0
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inbreeding coefficient (F) with vcftools
vcftools written 11 weeks ago by Sam • 130 • updated 6 weeks ago by Biostar ♦♦ 20
0
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1
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128
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1
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How to replicate vcftool's sliding window SNP density?
vcftools snp sequencing written 9 weeks ago by serpalma.v • 20 • updated 8 weeks ago by Vitis • 2.3k
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1
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102
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1
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Selecting set of SNPs using vcftools
vcf vcftools written 9 weeks ago by krishnapashu912 • 20 • updated 8 weeks ago by bari.ballew • 190
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0
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104
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0
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bcftools merge creates high missingness rate
bcftools plink vcftools written 9 weeks ago by biogirl • 180
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0
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217
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0
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bcftools and VCFTools consensus functionality both not working unless there are INDELS in VCF input
vcf fasta bcftools vcftools written 3 months ago by rc16955 • 60
3
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2
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4.4k
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2
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Best way to query VCF for specific variants
vcf annotation bcftools vcftools written 3.9 years ago by Sean • 180 • updated 3 months ago by bari.ballew • 190
0
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1
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128
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1
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Separating a region of the VCF file
vcftools snp written 3 months ago by mostafarafiepour • 60
5
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2
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293
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2
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VCF merge or concatenate?
vcf vcftools snp written 4 months ago by rokragna295 • 0 • updated 4 months ago by harish • 230
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0
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193
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0
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vcftools counts output not written to file
vcf frequency vcftools snp counts written 6 months ago by spider_monkey • 10 • updated 4 months ago by Biostar ♦♦ 20
0
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0
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495
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0
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Calculate Fis (inbreeding coefficient)
vcftools snp written 4 months ago by mostafarafiepour • 60
2
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1
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242
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1
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Hot to retrieval a SNP from a very big vcf file by position with tabix
vcf tabix vcftools snp written 4 months ago by vw • 20
6
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1
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3.3k
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1
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help with vcftools filtering on individuals
vcftools written 2.2 years ago by schisler • 30 • updated 4 months ago by pduluth96 • 10
5
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2
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12k
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2
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Installing Vcftools
vcftools written 7.3 years ago by nwaforcharles • 20 • updated 4 months ago by Biostar ♦♦ 20
4
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0
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178
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0
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vcftools merge: Incorrect number of F1R2 fields (2) at chr12:29486505, cannot merge.
merge f1r2 vcftools snp written 4 months ago by Shicheng Guo • 7.8k
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0
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277
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0
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How to apply vcftools --diff to identify vcf-specific variants/records
--diff --diff-site vcftools written 5 months ago by Shicheng Guo • 7.8k
0
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0
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235
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0
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 5 months ago by felipead66 • 40 • updated 5 months ago by RamRS ♦ 24k
3
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1
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261
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1
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Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf bcftools vcftools written 5 months ago by GabrielMontenegro • 540
2
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0
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283
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0
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Replace missing SNPs of one individual with reference alleles in a VCF file
bcftools vcftools snp sequencing written 5 months ago by amitgourav.ghosh12 • 60 • updated 5 months ago by zx8754 ♦ 8.4k
33
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3
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9.4k
views
11 follow
3
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How To Separate Snp Variants From Indel Variants In The Same Vcf File
vcf vcftools written 8.6 years ago by Jianfengmao • 310 • updated 5 months ago by rodd • 80
4
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0
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561
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0
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vcftools Warning: Expected at least 2 parts in FORMAT entry
vcftools written 5 months ago by Zoey Zou • 40
1
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3
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1.2k
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3
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 20 months ago by JSEM • 20 • updated 6 months ago by seta • 1.2k
0
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0
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360
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0
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Tajima's D equation - VCFtools
tajima vcftools written 6 months ago by bwczech • 90
0
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0
answers
335
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0
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 7 months ago by jon.klonowski • 40
0
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0
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490
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0
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How to turn current VCF into a VCF with genotype and rsID in same file
vcf bcftools vcftools written 7 months ago by austinkjensen5 • 0 • updated 7 months ago by Kevin Blighe ♦ 51k
6
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2
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4.9k
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2
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Merge vcf files from Multiple Samples
vcf vcftools written 5.6 years ago by Ron • 980 • updated 7 months ago by Biostar ♦♦ 20
10
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3
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2.8k
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10 follow
3
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How to add trio information to VCF or PED format (to compute Mendel error in Plink)
plink snp vcftools written 2.7 years ago by olavur • 100 • updated 7 months ago by Biostar ♦♦ 20
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