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<prev • 342 results • page 1 of 12 • next >
1
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64
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1
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Filtering VCF file by INFO flag
vcf vcftools written 4 days ago by zhamouda • 0
6
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3
answers
4.3k
views
7 follow
3
answers
SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 2.9 years ago by Dhana • 80 • updated 6 days ago by cannilay • 10
2
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2
answers
101
views
2
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vcftools separate only selected chrom allocation from 4gb vcf file
vcf filter allocation vcftools written 5 weeks ago by dev.info.2021 • 0
0
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1
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216
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1
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How to filter SNP and Indel under these criteria?
indel vcffilter freebayes vcftools snp written 12 weeks ago by r00628112 • 10 • updated 5 weeks ago by devarora • 50
0
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0
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112
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0
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bcftools error when re-annotating the FILTER column of a VCF when multiple ";" delimited FILTER values exist
vcf bcftools vcftools written 8 weeks ago by curious • 190
0
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0
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115
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0
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How to calculate linkage disequilibrium (LD) with only two genomes?
linkage disequilibrium plink ld vcftools written 8 weeks ago by KL_STKLBK • 0
1
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0
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247
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0
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vcftools not ouputting log file when run from perl
vcf vcftools written 9 weeks ago by dec986 • 210
0
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1
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114
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1
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VCFTools Removing Individuals and SNP counting
vcftools snp written 10 weeks ago by adnichols • 0 • updated 9 weeks ago by inedraylig • 20
0
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1
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122
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1
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Require Genotypes In Vcf File In Order To Output Frequency Statistics
vcf allele frequency vcftools af written 10 weeks ago by ja4123 • 0
1
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242
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0
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Why is VCFTools excluding so many SNPs in its Tajima D calculation?
vcftools snp population genetics written 3 months ago by Ace • 70 • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
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153
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0
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vcftools Tajima's D calculation
vcftools tajimasd selection written 11 weeks ago by biogirl • 190
0
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0
answers
128
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0
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Error with bcftools and vcftools and removing individuals
vcf bcftools vcftools written 12 weeks ago by seta • 1.2k
1
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0
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932
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5 follow
0
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Calculate Fis (inbreeding coefficient)
vcftools snp written 7 months ago by mostafarafiepour • 60 • updated 12 weeks ago by ginushika • 0
1
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1
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142
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1
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Filtering out by gene and samples from VCF files
vcf gene snp vcftools gtex written 3 months ago by gprashant17 • 70 • updated 3 months ago by Pierre Lindenbaum ♦ 126k
10
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3
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486
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3
answers
Execute commands in Bash Chunk in Rmarkdown
samtools rmarkdown vcftools rstudio written 4 months ago by M.O.L.S • 10
0
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0
answers
141
views
0
answers
Add additional common INFO flags to a vcf ?
vcf info_flags vcftools snp written 4 months ago by nbarthelemy01 • 10
0
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0
answers
377
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0
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inbreeding coefficient (F) with vcftools
vcftools written 5 months ago by Sam • 140 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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241
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1
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How to replicate vcftool's sliding window SNP density?
vcftools snp sequencing written 5 months ago by serpalma.v • 30 • updated 5 months ago by Vitis • 2.3k
0
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1
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152
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1
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Selecting set of SNPs using vcftools
vcf vcftools written 5 months ago by krishnapashu912 • 20 • updated 5 months ago by bari.ballew • 190
0
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0
answers
156
views
0
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bcftools merge creates high missingness rate
bcftools plink vcftools written 5 months ago by biogirl • 190
0
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0
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422
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0
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bcftools and VCFTools consensus functionality both not working unless there are INDELS in VCF input
vcf fasta bcftools vcftools written 6 months ago by rc16955 • 60
3
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2
answers
5.0k
views
2
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Best way to query VCF for specific variants
vcf annotation bcftools vcftools written 4.1 years ago by Sean • 200 • updated 6 months ago by bari.ballew • 190
0
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1
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182
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1
answer
Separating a region of the VCF file
vcftools snp written 6 months ago by mostafarafiepour • 60
5
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2
answers
474
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2
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VCF merge or concatenate?
vcf vcftools snp written 7 months ago by rokragna295 • 0 • updated 7 months ago by harish • 250
1
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0
answers
239
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0
answers
vcftools counts output not written to file
vcf frequency vcftools snp counts written 9 months ago by spider_monkey • 10 • updated 7 months ago by Biostar ♦♦ 20
2
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1
answer
325
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1
answer
Hot to retrieval a SNP from a very big vcf file by position with tabix
vcf tabix vcftools snp written 7 months ago by vw • 20
6
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1
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3.7k
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1
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help with vcftools filtering on individuals
vcftools written 2.4 years ago by schisler • 30 • updated 7 months ago by pduluth96 • 10
5
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2
answers
13k
views
2
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Installing Vcftools
vcftools written 7.6 years ago by nwaforcharles • 20 • updated 7 months ago by Biostar ♦♦ 20
4
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0
answers
227
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0
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vcftools merge: Incorrect number of F1R2 fields (2) at chr12:29486505, cannot merge.
merge f1r2 vcftools snp written 7 months ago by Shicheng Guo • 8.0k
0
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0
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510
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0
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How to apply vcftools --diff to identify vcf-specific variants/records
--diff --diff-site vcftools written 8 months ago by Shicheng Guo • 8.0k
<prev • 342 results • page 1 of 12 • next >
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