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<prev • 308 results • page 1 of 11 • next >
2
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1
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1.1k
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1
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 3.4 years ago by jfertaj • 90 • updated 11 hours ago by zx8754 ♦ 6.8k
0
votes
0
answers
62
views
0
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Filtering SNPS by minimum LD value in bcftools?
vcf bcftools vcftools ld r2 written 23 hours ago by RNAseqer • 20
0
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1
answer
72
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1
answer
VCFTOOLS won't read my vcf file
vcf vcftools snp written 2 days ago by wruzic1 • 0
0
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0
answers
132
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0
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Splitting .vcf file
wgs vcftools written 12 days ago by F • 3.4k
0
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1
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398
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1
answer
How to extract proxy SNPs using 1000G vcf for a list of SNPs
1000g proxy vcftools snp plink written 22 days ago by janhuang.cn • 140 • updated 22 days ago by chrchang523 ♦ 4.8k
11
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2
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22k
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2
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.5 years ago by roll • 260 • updated 22 days ago by hakimeazarafra • 0
1
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2
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337
views
2
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Allele frequency visualization
R stacks vcftools snp written 3 months ago by jaafari.omid • 40 • updated 25 days ago by msimmer92 • 150
1
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2
answers
751
views
2
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Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf imputation qc vcftools snp written 12 months ago by JSEM • 20 • updated 27 days ago by GK1610 • 60
4
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0
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203
views
0
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VCF file filtration
vcf wgs bcftools vcftools snp written 4 weeks ago by jaafari.omid • 40
0
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0
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199
views
0
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How vcftools calculate Fst value?
populations fst vcftools written 6 weeks ago by seta • 1.1k
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0
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1.0k
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0
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vcftool negative relatedness values for family members
pedigree kinship qc vcftools written 2.8 years ago by marcusanaymik • 10 • updated 5 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
879
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1
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"Error: --recode 23 cannot be used with multi-character allele names." when converting VCF to 23andme
vcftools plink1.9 written 22 months ago by beneficii • 30 • updated 8 weeks ago by nuria.mauri • 0
4
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1
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1.6k
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5 follow
1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 23 months ago by feng9oly • 0 • updated 9 weeks ago by Biostar ♦♦ 20
5
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1
answer
966
views
1
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 9 months ago by gradstudentNew • 10 • updated 10 weeks ago by zx8754 ♦ 6.8k
3
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1
answer
199
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1
answer
Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 11 weeks ago by miles.thorburn • 80
0
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1
answer
334
views
1
answer
VCFtools calculate SNP density
vcf bioinformatics snp density vcftools snp written 3 months ago by christinachavez • 0 • updated 3 months ago by ashishbansal12300 • 0
1
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1
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2.0k
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1
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Is the heterozygosity flag (--het) in vcftools calculate observed and expected heterozygosity?
vcf vcftools written 19 months ago by ahmedaljumiliy • 10 • updated 3 months ago by Kevin Blighe ♦ 39k
1
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2
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1.8k
views
2
answers
vcf-subset error: "Wrong number of fields" in vcf file
vcf vcf-subset variant vcftools 1000 genomes written 3.6 years ago by Lylthera • 0 • updated 3 months ago by zx8754 ♦ 6.8k
3
votes
2
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189
views
2
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Count variants between two samples within a multi-sample VCF
vcf vcftools written 3 months ago by rc16955 • 50 • updated 3 months ago by chrchang523 ♦ 4.8k
4
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2
answers
190
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2
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split vcf by individual
vcf vcf-subset vcftools snp written 3 months ago by sonia.olaechea • 60 • updated 3 months ago by Paul • 1.3k
14
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2
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11k
views
2
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How to extract sample id using bcftools or vcftools
vcf bcftools vcftools snp written 3.9 years ago by xinhui.wang • 150 • updated 4 months ago by zx8754 ♦ 6.8k
12
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2
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11k
views
12 follow
2
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How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
vcftools mpileup written 7.1 years ago by Deniz • 50 • updated 4 months ago by zx8754 ♦ 6.8k
2
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2
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1.1k
views
2
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Split a large VCF into user defined regions
vcf vcftools sequencing written 2.5 years ago by zelia.worman • 0 • updated 4 months ago by zx8754 ♦ 6.8k
7
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2
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5.7k
views
5 follow
2
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Most effective way to merge individual VCF files into VCF files merged by chromosome
vcf vcfmerge merge vcftools plinkseq written 4.8 years ago by vlaufer • 260 • updated 4 months ago by Biostar ♦♦ 20
2
votes
2
answers
464
views
2
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vcftools --TajimaD in sliding windows
snp vcftools tajima's d written 4 months ago by sonia.olaechea • 60
7
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0
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572
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6 follow
0
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Tutorial: Fast LD computation from VCF files using tomahawk
bcftools ld vcf tutorial snp vcftools written 4 months ago by rmf • 550
4
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1
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341
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1
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How do I use vcftools to filter by variant ID OR variant position?
vcftools written 4 months ago by jwhite007 • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 118k
0
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0
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191
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0
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NCBI Remap Issue
genome gwas remapping vcftools snp written 4 months ago by f.abbondanza94 • 0
1
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1
answer
563
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1
answer
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
vcf vcftools written 5 months ago by mayara.salvian • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 118k
1
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0
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331
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0
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vcftools vcf-merge error
vcf-merge vcftools written 5 months ago by biogirl • 160
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