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7
votes
1
answer
261
views
1
answer
Using VelvetOptimiser.pl within a forloop
assembly velvet sequencing written 5 months ago by c.e.chong • 10
1
vote
1
answer
307
views
1
answer
Calculating alignment/mapping time
calculation ngs mapping velvet denovo assembly written 7 months ago by kumars.sv • 0 • updated 7 months ago by h.mon ♦ 25k
3
votes
1
answer
1.1k
views
1
answer
VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 3.3 years ago by dsoronellas • 20 • updated 8 months ago by RamRS ♦ 21k
1
vote
1
answer
247
views
1
answer
Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 13 months ago by deepti1rao • 20 • updated 13 months ago by toralmanvar • 760
0
votes
0
answers
411
views
0
answers
Running velveth with multiple k-mer lengths: process stops after first k-mer value
assembly velvet written 13 months ago by Ty • 0
2
votes
2
answers
707
views
7 follow
2
answers
Judging best assembly
assembly cut off kmer coverage velvet written 14 months ago by deepti1rao • 20 • updated 14 months ago by Rohit • 1.3k
2
votes
2
answers
545
views
2
answers
velvetg failed during the assembly
illumina n50 velvet denovo written 17 months ago by slimane.khayi • 40
3
votes
1
answer
378
views
1
answer
lower case bases in Velvet assembly
assembly lower case velvet written 18 months ago by toralmanvar • 760 • updated 18 months ago by Kevin Blighe ♦ 43k
0
votes
0
answers
687
views
0
answers
Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 19 months ago by pablo61991 • 70 • updated 19 months ago by genomax ♦ 68k
0
votes
0
answers
429
views
0
answers
How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 19 months ago by bioinformatics_bel • 20
0
votes
0
answers
780
views
0
answers
ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 20 months ago by Abdul Rafay Khan • 1.0k
6
votes
2
answers
3.3k
views
2
answers
Tracking Reads/Contigs In Velvet
read velvet written 7.7 years ago by Abhi • 1.5k • updated 21 months ago by Biostar ♦♦ 20
6
votes
5
answers
4.7k
views
5 follow
5
answers
Metavelvet fails at Scaffolding stage
genome assembly velvet written 4.8 years ago by jamesT • 30 • updated 2.1 years ago by alfbenpa • 10
0
votes
0
answers
745
views
0
answers
Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 2.1 years ago by Vimac • 0 • updated 2.1 years ago by WouterDeCoster ♦ 39k
3
votes
1
answer
678
views
1
answer
Velvet Installation Headache
velvet sequencing written 2.2 years ago by richardschumaker126 • 0 • updated 2.2 years ago by k.kathirvel93 • 190
2
votes
0
answers
575
views
0
answers
VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 2.3 years ago by katherine.lavoie • 0
1
vote
1
answer
1.0k
views
1
answer
Velvetg not producing output files
velvetg velvet written 2.4 years ago by Pryce Michener • 10 • updated 2.4 years ago by k.kathirvel93 • 190
0
votes
0
answers
625
views
0
answers
VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 2.5 years ago by samuel.lipworth • 30
0
votes
0
answers
588
views
0
answers
VelvetOptimiser getting an unknown option error
assembly velvet written 2.6 years ago by Pryce Michener • 10
0
votes
0
answers
742
views
0
answers
test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 2.6 years ago by saranpons3 • 60
1
vote
1
answer
856
views
1
answer
Total genome size Velvet
assembly genome size velvet written 2.8 years ago by fernanda_boo • 0 • updated 2.8 years ago by mastal511 • 2.0k
8
votes
0
answers
2.0k
views
0
answers
Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 2.9 years ago by rrcutler • 110
4
votes
1
answer
1.2k
views
1
answer
Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 2.9 years ago by SJ Basu • 30 • updated 2.9 years ago by Brian Bushnell ♦ 16k
0
votes
3
answers
3.9k
views
3
answers
Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 4.5 years ago by ramesh.8v • 200 • updated 3.0 years ago by rafael.d.macho • 0
2
votes
1
answer
728
views
1
answer
velvetg problem after Threading through reads
de novo rna-seq velvet written 3.1 years ago by avolkov • 10 • updated 3.1 years ago by Antonio R. Franco • 4.0k
0
votes
0
answers
1.3k
views
0
answers
Velvet Assembly Online
assembly velvet written 3.3 years ago by ' • 170
3
votes
3
answers
1.3k
views
3
answers
Velvet Assembly Parameters
assembly velvet written 3.4 years ago by ' • 170 • updated 3.4 years ago by elbecerrasoto • 30
3
votes
1
answer
1.4k
views
1
answer
Error installing Velvet assembler on Mac OS X
assembly forum velvet written 3.5 years ago by iferroci • 0 • updated 3.5 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.9k
views
1
answer
Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 3.5 years ago by novice • 920 • updated 3.5 years ago by Antonio R. Franco • 4.0k
1
vote
1
answer
1.8k
views
1
answer
velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 3.5 years ago by jeremy.cox.2 • 90 • updated 3.5 years ago by pld ♦ 4.8k
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