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2
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187
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7 follow
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Judging best assembly
assembly cut off kmer coverage velvet written 17 days ago by deepti1rao • 0 • updated 11 days ago by Rohit • 1.3k
1
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2
answers
204
views
2
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velvetg failed during the assembly
illumina n50 velvet denovo written 3 months ago by slimane.khayi • 20
3
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1
answer
202
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1
answer
lower case bases in Velvet assembly
assembly lower case velvet written 4 months ago by toralmanvar • 150 • updated 4 months ago by Kevin Blighe ♦ 16k
0
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0
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294
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0
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 5 months ago by pablo61991 • 40 • updated 5 months ago by genomax ♦ 46k
0
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0
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198
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0
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 5 months ago by bioinformatics_bel • 20
0
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0
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369
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0
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 6 months ago by Abdul Rafay Khan • 780
6
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2
answers
2.9k
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2
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Tracking Reads/Contigs In Velvet
read velvet written 6.6 years ago by Abhi • 1.4k • updated 7 months ago by Biostar ♦♦ 20
6
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5
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4.0k
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5 follow
5
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 3.7 years ago by jamesT • 30 • updated 10 months ago by alfbenpa • 10
0
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0
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450
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0
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Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 11 months ago by Vimac • 0 • updated 11 months ago by WouterDeCoster ♦ 27k
3
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1
answer
395
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1
answer
Velvet Installation Headache
velvet sequencing written 12 months ago by richardschumaker126 • 0 • updated 12 months ago by k.kathirvel93 • 30
2
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0
answers
308
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0
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VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 13 months ago by katherine.lavoie • 0
1
vote
1
answer
597
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1
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Velvetg not producing output files
velvetg velvet written 14 months ago by Pryce Michener • 10 • updated 14 months ago by k.kathirvel93 • 30
0
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0
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385
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0
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 15 months ago by samuel.lipworth • 20
0
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0
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367
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0
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VelvetOptimiser getting an unknown option error
assembly velvet written 17 months ago by Pryce Michener • 10
0
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0
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492
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0
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 18 months ago by saranpons3 • 50
1
vote
1
answer
537
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1
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Total genome size Velvet
assembly genome size velvet written 19 months ago by fernanda_boo • 0 • updated 19 months ago by mastal511 • 1.8k
7
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0
answers
1.2k
views
0
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 21 months ago by rrcutler • 90
4
votes
1
answer
803
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1
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Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 21 months ago by sjbasu • 20 • updated 21 months ago by Brian Bushnell ♦ 15k
0
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3
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2.9k
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3
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Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 3.3 years ago by ramesh.8v • 190 • updated 22 months ago by rafael.d.macho • 0
2
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1
answer
522
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1
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velvetg problem after Threading through reads
de novo rna-seq velvet written 23 months ago by avolkov • 10 • updated 23 months ago by Antonio R. Franco • 3.6k
2
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1
answer
784
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1
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VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 2.2 years ago by dsoronellas • 10 • updated 2.2 years ago by Philipp Bayer ♦ 5.4k
0
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0
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815
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0
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Velvet Assembly Online
assembly velvet written 2.2 years ago by ' • 160
3
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3
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853
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3
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Velvet Assembly Parameters
assembly velvet written 2.2 years ago by ' • 160 • updated 2.2 years ago by elbecerrasoto • 30
3
votes
1
answer
956
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1
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Error installing Velvet assembler on Mac OS X
assembly forum velvet written 2.4 years ago by iferroci • 0 • updated 2.3 years ago by Biostar ♦♦ 20
1
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1
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2.1k
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1
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Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 2.3 years ago by novice • 820 • updated 2.3 years ago by Antonio R. Franco • 3.6k
1
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1
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1.3k
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1
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velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 2.4 years ago by jeremy.cox.2 • 80 • updated 2.4 years ago by pld ♦ 4.7k
0
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1
answer
738
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1
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de novo transcriptome assembly
transcriptome velvet oases rna-seq written 2.4 years ago by pbigbig • 190 • updated 2.4 years ago by seta • 960
2
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0
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1.2k
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0
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How stringent/loose should clustering be (CD-HIT-EST/USearch) for multi-kmer assemblies?
trinity cd-hit rna-seq velvet sequencing written 2.4 years ago by satshil.r • 50
3
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1
answer
2.0k
views
1
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Total Contig Length From Velvet Output
length velvet written 4.9 years ago by deepthithomaskannan • 200 • updated 2.4 years ago by Biostar ♦♦ 20
2
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2
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1.6k
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2
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Synchronization of fastq files
assembly velvet written 2.4 years ago by Antonio R. Franco • 3.6k • updated 2.4 years ago by Devon Ryan ♦ 78k
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