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Calculating alignment/mapping time
calculation ngs mapping velvet denovo assembly written 29 days ago by kumars.sv • 0 • updated 26 days ago by h.mon ♦ 21k
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VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 2.8 years ago by dsoronellas • 20 • updated 11 weeks ago by RamRS ♦ 19k
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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 7 months ago by deepti1rao • 20 • updated 7 months ago by toralmanvar • 720
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Running velveth with multiple k-mer lengths: process stops after first k-mer value
assembly velvet written 7 months ago by Ty • 0
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7 follow
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Judging best assembly
assembly cut off kmer coverage velvet written 8 months ago by deepti1rao • 20 • updated 8 months ago by Rohit • 1.3k
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velvetg failed during the assembly
illumina n50 velvet denovo written 11 months ago by slimane.khayi • 40
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lower case bases in Velvet assembly
assembly lower case velvet written 12 months ago by toralmanvar • 720 • updated 12 months ago by Kevin Blighe ♦ 33k
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 13 months ago by pablo61991 • 70 • updated 13 months ago by genomax ♦ 59k
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 13 months ago by bioinformatics_bel • 20
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 14 months ago by Abdul Rafay Khan • 890
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Tracking Reads/Contigs In Velvet
read velvet written 7.2 years ago by Abhi • 1.5k • updated 15 months ago by Biostar ♦♦ 20
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5 follow
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 4.3 years ago by jamesT • 30 • updated 18 months ago by alfbenpa • 10
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Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 19 months ago by Vimac • 0 • updated 19 months ago by WouterDeCoster ♦ 35k
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Velvet Installation Headache
velvet sequencing written 20 months ago by richardschumaker126 • 0 • updated 19 months ago by k.kathirvel93 • 140
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VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 21 months ago by katherine.lavoie • 0
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Velvetg not producing output files
velvetg velvet written 22 months ago by Pryce Michener • 10 • updated 22 months ago by k.kathirvel93 • 140
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 23 months ago by samuel.lipworth • 30
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VelvetOptimiser getting an unknown option error
assembly velvet written 2.1 years ago by Pryce Michener • 10
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 2.1 years ago by saranpons3 • 50
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Total genome size Velvet
assembly genome size velvet written 2.2 years ago by fernanda_boo • 0 • updated 2.2 years ago by mastal511 • 2.0k
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 2.4 years ago by rrcutler • 110
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Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 2.4 years ago by sjbasu • 30 • updated 2.4 years ago by Brian Bushnell ♦ 16k
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Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 4.0 years ago by ramesh.8v • 200 • updated 2.5 years ago by rafael.d.macho • 0
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1
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635
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velvetg problem after Threading through reads
de novo rna-seq velvet written 2.6 years ago by avolkov • 10 • updated 2.6 years ago by Antonio R. Franco • 3.9k
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Velvet Assembly Online
assembly velvet written 2.8 years ago by ' • 160
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Velvet Assembly Parameters
assembly velvet written 2.9 years ago by ' • 160 • updated 2.9 years ago by elbecerrasoto • 30
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1
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Error installing Velvet assembler on Mac OS X
assembly forum velvet written 3.0 years ago by iferroci • 0 • updated 3.0 years ago by Biostar ♦♦ 20
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Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 3.0 years ago by novice • 830 • updated 3.0 years ago by Antonio R. Franco • 3.9k
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velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 3.0 years ago by jeremy.cox.2 • 90 • updated 3.0 years ago by pld ♦ 4.7k
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de novo transcriptome assembly
transcriptome velvet oases rna-seq written 3.0 years ago by pbigbig • 190 • updated 3.0 years ago by seta • 1.1k
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