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6
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2
answers
2.6k
views
2
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Tracking Reads/Contigs In Velvet
read velvet written 6.0 years ago by Abhi • 1.4k • updated 14 days ago by Biostar ♦♦ 20
6
votes
5
answers
3.5k
views
5 follow
5
answers
Metavelvet fails at Scaffolding stage
genome assembly velvet written 3.1 years ago by jamesT • 30 • updated 3 months ago by alfbenpa • 10
0
votes
0
answers
248
views
0
answers
Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 4 months ago by Vimac • 0 • updated 4 months ago by WouterDeCoster ♦ 21k
3
votes
1
answer
207
views
1
answer
Velvet Installation Headache
velvet sequencing written 5 months ago by richardschumaker126 • 0 • updated 5 months ago by k.kathirvel93 • 30
2
votes
0
answers
167
views
0
answers
VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 6 months ago by katherine.lavoie • 0
1
vote
1
answer
330
views
1
answer
Velvetg not producing output files
velvetg velvet written 7 months ago by Pryce Michener • 10 • updated 7 months ago by k.kathirvel93 • 30
0
votes
0
answers
257
views
0
answers
VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 8 months ago by samuel.lipworth • 10
0
votes
0
answers
232
views
0
answers
VelvetOptimiser getting an unknown option error
assembly velvet written 10 months ago by Pryce Michener • 10
0
votes
0
answers
309
views
0
answers
test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 10 months ago by saranpons3 • 40
1
vote
1
answer
331
views
1
answer
Total genome size Velvet
assembly genome size velvet written 12 months ago by fernanda_boo • 0 • updated 12 months ago by mastal511 • 1.7k
7
votes
0
answers
769
views
0
answers
Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 13 months ago by rrcutler • 80
4
votes
1
answer
553
views
1
answer
Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 14 months ago by sjbasu • 0 • updated 14 months ago by Brian Bushnell ♦ 14k
0
votes
3
answers
2.4k
views
3
answers
Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 2.7 years ago by ramesh.8v • 150 • updated 15 months ago by rafael.d.macho • 0
2
votes
1
answer
388
views
1
answer
velvetg problem after Threading through reads
de novo rna-seq velvet written 16 months ago by avolkov • 10 • updated 16 months ago by Antonio R. Franco • 3.4k
2
votes
1
answer
592
views
1
answer
VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 19 months ago by dsoronellas • 10 • updated 19 months ago by Philipp Bayer ♦ 4.6k
0
votes
0
answers
618
views
0
answers
Velvet Assembly Online
assembly velvet written 19 months ago by ' • 150
3
votes
3
answers
678
views
3
answers
Velvet Assembly Parameters
assembly velvet written 20 months ago by ' • 150 • updated 20 months ago by elbecerrasoto • 20
3
votes
1
answer
694
views
1
answer
Error installing Velvet assembler on Mac OS X
assembly forum velvet written 21 months ago by iferroci • 0 • updated 21 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.7k
views
1
answer
Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 21 months ago by novice • 690 • updated 21 months ago by Antonio R. Franco • 3.4k
1
vote
1
answer
920
views
1
answer
velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 21 months ago by jeremy.cox.2 • 80 • updated 21 months ago by pld ♦ 4.6k
0
votes
1
answer
599
views
1
answer
de novo transcriptome assembly
transcriptome velvet oases rna-seq written 21 months ago by pbigbig • 180 • updated 21 months ago by seta • 920
2
votes
0
answers
920
views
0
answers
How stringent/loose should clustering be (CD-HIT-EST/USearch) for multi-kmer assemblies?
trinity cd-hit rna-seq velvet sequencing written 21 months ago by satshil.r • 50
3
votes
1
answer
1.8k
views
1
answer
Total Contig Length From Velvet Output
length velvet written 4.3 years ago by deepthithomaskannan • 190 • updated 21 months ago by Biostar ♦♦ 20
2
votes
2
answers
1.2k
views
2
answers
Synchronization of fastq files
assembly velvet written 22 months ago by Antonio R. Franco • 3.4k • updated 22 months ago by Devon Ryan ♦ 70k
0
votes
1
answer
590
views
1
answer
Error in velvet
velvet written 2.1 years ago by suhalsuhaimi • 20 • updated 2.1 years ago by John Marshall • 1.1k
0
votes
0
answers
1.1k
views
0
answers
MetaVelvet caught in an infinite loop?
software error assembly velvet help request written 2.2 years ago by slvt16 • 0 • updated 2.2 years ago by Ram ♦ 12k
0
votes
2
answers
2.4k
views
2
answers
How to calculate overall coverage in de novo metagenomics assembly?
metagenomics velvet written 2.3 years ago by student-t • 380 • updated 2.3 years ago by Brian Bushnell ♦ 14k
3
votes
2
answers
1.1k
views
2
answers
velvet user manual - node lengths????
velvet written 2.3 years ago by student-t • 380 • updated 2.3 years ago by lexnederbragt • 1.2k
0
votes
0
answers
464
views
0
answers
A beginner question about eulerian path algorithms
genome assembly kmer velvet snp written 2.3 years ago by Abhishek • 0
1
vote
2
answers
1.4k
views
2
answers
Error In Velvet 1.2.10 Installation in Kubuntu
installation 1.2.10 velvet written 3.3 years ago by chariko • 30 • updated 2.3 years ago by Biostar ♦♦ 20
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