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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 5 weeks ago by deepti1rao • 0 • updated 5 weeks ago by toralmanvar • 330
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84
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Running velveth with multiple k-mer lengths: process stops after first k-mer value
assembly velvet written 6 weeks ago by Ty • 0
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262
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7 follow
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Judging best assembly
assembly cut off kmer coverage velvet written 11 weeks ago by deepti1rao • 0 • updated 10 weeks ago by Rohit • 1.3k
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241
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velvetg failed during the assembly
illumina n50 velvet denovo written 5 months ago by slimane.khayi • 40
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1
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224
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1
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lower case bases in Velvet assembly
assembly lower case velvet written 6 months ago by toralmanvar • 330 • updated 6 months ago by Kevin Blighe ♦ 21k
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 7 months ago by pablo61991 • 40 • updated 7 months ago by genomax ♦ 49k
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 7 months ago by bioinformatics_bel • 20
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 8 months ago by Abdul Rafay Khan • 830
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Tracking Reads/Contigs In Velvet
read velvet written 6.7 years ago by Abhi • 1.5k • updated 9 months ago by Biostar ♦♦ 20
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5 follow
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 3.8 years ago by jamesT • 30 • updated 12 months ago by alfbenpa • 10
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Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 13 months ago by Vimac • 0 • updated 13 months ago by WouterDeCoster ♦ 29k
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1
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436
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1
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Velvet Installation Headache
velvet sequencing written 14 months ago by richardschumaker126 • 0 • updated 14 months ago by k.kathirvel93 • 50
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362
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VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 15 months ago by katherine.lavoie • 0
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Velvetg not producing output files
velvetg velvet written 16 months ago by Pryce Michener • 10 • updated 16 months ago by k.kathirvel93 • 50
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 17 months ago by samuel.lipworth • 20
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VelvetOptimiser getting an unknown option error
assembly velvet written 19 months ago by Pryce Michener • 10
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 20 months ago by saranpons3 • 50
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Total genome size Velvet
assembly genome size velvet written 21 months ago by fernanda_boo • 0 • updated 21 months ago by mastal511 • 1.9k
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 23 months ago by rrcutler • 100
4
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1
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876
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1
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Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 23 months ago by sjbasu • 30 • updated 23 months ago by Brian Bushnell ♦ 15k
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3
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Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 3.5 years ago by ramesh.8v • 190 • updated 2.1 years ago by rafael.d.macho • 0
2
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1
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560
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velvetg problem after Threading through reads
de novo rna-seq velvet written 2.1 years ago by avolkov • 10 • updated 2.1 years ago by Antonio R. Franco • 3.7k
2
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1
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842
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VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 2.3 years ago by dsoronellas • 10 • updated 2.3 years ago by Philipp Bayer ♦ 5.5k
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Velvet Assembly Online
assembly velvet written 2.3 years ago by ' • 160
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Velvet Assembly Parameters
assembly velvet written 2.4 years ago by ' • 160 • updated 2.4 years ago by elbecerrasoto • 30
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1
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Error installing Velvet assembler on Mac OS X
assembly forum velvet written 2.5 years ago by iferroci • 0 • updated 2.5 years ago by Biostar ♦♦ 20
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Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 2.5 years ago by novice • 820 • updated 2.5 years ago by Antonio R. Franco • 3.7k
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velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 2.5 years ago by jeremy.cox.2 • 90 • updated 2.5 years ago by pld ♦ 4.7k
0
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de novo transcriptome assembly
transcriptome velvet oases rna-seq written 2.5 years ago by pbigbig • 190 • updated 2.5 years ago by seta • 980
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How stringent/loose should clustering be (CD-HIT-EST/USearch) for multi-kmer assemblies?
trinity cd-hit rna-seq velvet sequencing written 2.5 years ago by satshil.r • 50
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