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3
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VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 2.7 years ago by dsoronellas • 20 • updated 23 days ago by RamRS ♦ 18k
1
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1
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127
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1
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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 5 months ago by deepti1rao • 20 • updated 5 months ago by toralmanvar • 630
0
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0
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156
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0
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Running velveth with multiple k-mer lengths: process stops after first k-mer value
assembly velvet written 5 months ago by Ty • 0
2
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2
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407
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7 follow
2
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Judging best assembly
assembly cut off kmer coverage velvet written 6 months ago by deepti1rao • 20 • updated 6 months ago by Rohit • 1.3k
1
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2
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326
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2
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velvetg failed during the assembly
illumina n50 velvet denovo written 9 months ago by slimane.khayi • 40
3
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1
answer
274
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1
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lower case bases in Velvet assembly
assembly lower case velvet written 10 months ago by toralmanvar • 630 • updated 10 months ago by Kevin Blighe ♦ 30k
0
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0
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449
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0
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 11 months ago by pablo61991 • 40 • updated 11 months ago by genomax ♦ 57k
0
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0
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300
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0
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 11 months ago by bioinformatics_bel • 20
0
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0
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569
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 12 months ago by Abdul Rafay Khan • 880
6
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2
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3.0k
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2
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Tracking Reads/Contigs In Velvet
read velvet written 7.0 years ago by Abhi • 1.5k • updated 13 months ago by Biostar ♦♦ 20
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5
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4.3k
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5 follow
5
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 4.2 years ago by jamesT • 30 • updated 16 months ago by alfbenpa • 10
0
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0
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590
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0
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Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 17 months ago by Vimac • 0 • updated 17 months ago by WouterDeCoster ♦ 32k
3
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1
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522
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1
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Velvet Installation Headache
velvet sequencing written 18 months ago by richardschumaker126 • 0 • updated 18 months ago by k.kathirvel93 • 110
2
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0
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425
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0
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VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 19 months ago by katherine.lavoie • 0
1
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1
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1
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Velvetg not producing output files
velvetg velvet written 20 months ago by Pryce Michener • 10 • updated 20 months ago by k.kathirvel93 • 110
0
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0
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495
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0
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 21 months ago by samuel.lipworth • 30
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0
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456
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0
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VelvetOptimiser getting an unknown option error
assembly velvet written 23 months ago by Pryce Michener • 10
0
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0
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611
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0
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 24 months ago by saranpons3 • 50
1
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1
answer
691
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1
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Total genome size Velvet
assembly genome size velvet written 2.1 years ago by fernanda_boo • 0 • updated 2.1 years ago by mastal511 • 2.0k
8
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0
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1.6k
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0
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 2.2 years ago by rrcutler • 110
4
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1
answer
1.0k
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1
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Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 2.2 years ago by sjbasu • 30 • updated 2.2 years ago by Brian Bushnell ♦ 16k
0
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3
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3.3k
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3
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Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 3.8 years ago by ramesh.8v • 200 • updated 2.4 years ago by rafael.d.macho • 0
2
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1
answer
612
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1
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velvetg problem after Threading through reads
de novo rna-seq velvet written 2.4 years ago by avolkov • 10 • updated 2.4 years ago by Antonio R. Franco • 3.8k
0
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0
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990
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0
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Velvet Assembly Online
assembly velvet written 2.7 years ago by ' • 160
3
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3
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1.0k
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3
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Velvet Assembly Parameters
assembly velvet written 2.7 years ago by ' • 160 • updated 2.7 years ago by elbecerrasoto • 30
3
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1
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1.1k
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1
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Error installing Velvet assembler on Mac OS X
assembly forum velvet written 2.9 years ago by iferroci • 0 • updated 2.8 years ago by Biostar ♦♦ 20
1
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1
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2.5k
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1
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Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 2.8 years ago by novice • 830 • updated 2.8 years ago by Antonio R. Franco • 3.8k
1
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1
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1.5k
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1
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velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 2.9 years ago by jeremy.cox.2 • 90 • updated 2.9 years ago by pld ♦ 4.7k
0
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1
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855
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1
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de novo transcriptome assembly
transcriptome velvet oases rna-seq written 2.9 years ago by pbigbig • 190 • updated 2.9 years ago by seta • 1.0k
2
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0
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1.4k
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0
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How stringent/loose should clustering be (CD-HIT-EST/USearch) for multi-kmer assemblies?
trinity cd-hit rna-seq velvet sequencing written 2.9 years ago by satshil.r • 50
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