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6
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5
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3.4k
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5 follow
5
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 2.9 years ago by jamesT • 30 • updated 8 weeks ago by alfbenpa • 10
0
votes
0
answers
172
views
0
answers
Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 9 weeks ago by Vimac • 0 • updated 9 weeks ago by WouterDeCoster ♦ 20k
3
votes
1
answer
176
views
1
answer
Velvet Installation Headache
velvet sequencing written 3 months ago by richardschumaker126 • 0 • updated 3 months ago by k.kathirvel93 • 30
2
votes
0
answers
136
views
0
answers
VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 4 months ago by katherine.lavoie • 0
1
vote
1
answer
282
views
1
answer
Velvetg not producing output files
velvetg velvet written 5 months ago by Pryce Michener • 10 • updated 5 months ago by k.kathirvel93 • 30
0
votes
0
answers
224
views
0
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 6 months ago by samuel.lipworth • 10
0
votes
0
answers
204
views
0
answers
VelvetOptimiser getting an unknown option error
assembly velvet written 8 months ago by Pryce Michener • 10
0
votes
0
answers
273
views
0
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 9 months ago by saranpons3 • 40
1
vote
1
answer
291
views
1
answer
Total genome size Velvet
assembly genome size velvet written 10 months ago by fernanda_boo • 0 • updated 10 months ago by mastal511 • 1.7k
7
votes
0
answers
645
views
0
answers
Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 12 months ago by rrcutler • 80
4
votes
1
answer
508
views
1
answer
Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 12 months ago by sjbasu • 0 • updated 12 months ago by Brian Bushnell ♦ 13k
0
votes
3
answers
2.3k
views
3
answers
Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 2.6 years ago by ramesh.8v • 150 • updated 13 months ago by rafael.d.macho • 0
2
votes
1
answer
355
views
1
answer
velvetg problem after Threading through reads
de novo rna-seq velvet written 14 months ago by avolkov • 10 • updated 14 months ago by Antonio R. Franco • 3.3k
2
votes
1
answer
547
views
1
answer
VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 17 months ago by dsoronellas • 10 • updated 17 months ago by Philipp Bayer ♦ 4.5k
0
votes
0
answers
576
views
0
answers
Velvet Assembly Online
assembly velvet written 17 months ago by ' • 150
3
votes
3
answers
649
views
3
answers
Velvet Assembly Parameters
assembly velvet written 18 months ago by ' • 150 • updated 18 months ago by elbecerrasoto • 20
3
votes
1
answer
654
views
1
answer
Error installing Velvet assembler on Mac OS X
assembly forum velvet written 19 months ago by iferroci • 0 • updated 19 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.6k
views
1
answer
Velvet: What's the relation between kmer coverage and normal coverage?
assembly contigs coverage velvet written 19 months ago by novice • 680 • updated 19 months ago by Antonio R. Franco • 3.3k
1
vote
1
answer
819
views
1
answer
velvet assembler and paired reads: -shortpaired vs -longpaired?
assembler velvet written 19 months ago by jeremy.cox.2 • 80 • updated 19 months ago by pld ♦ 4.6k
0
votes
1
answer
566
views
1
answer
de novo transcriptome assembly
transcriptome velvet oases rna-seq written 19 months ago by pbigbig • 170 • updated 19 months ago by seta • 900
1
vote
0
answers
854
views
0
answers
How stringent/loose should clustering be (CD-HIT-EST/USearch) for multi-kmer assemblies?
trinity cd-hit rna-seq velvet sequencing written 19 months ago by satshil.r • 40
3
votes
1
answer
1.7k
views
1
answer
Total Contig Length From Velvet Output
length velvet written 4.2 years ago by deepthithomaskannan • 190 • updated 20 months ago by Biostar ♦♦ 20
2
votes
2
answers
1.2k
views
2
answers
Synchronization of fastq files
assembly velvet written 20 months ago by Antonio R. Franco • 3.3k • updated 20 months ago by Devon Ryan ♦ 69k
0
votes
1
answer
554
views
1
answer
Error in velvet
velvet written 23 months ago by suhalsuhaimi • 20 • updated 23 months ago by John Marshall • 1.0k
0
votes
0
answers
1.0k
views
0
answers
MetaVelvet caught in an infinite loop?
software error assembly velvet help request written 2.0 years ago by slvt16 • 0 • updated 2.0 years ago by Ram ♦ 12k
0
votes
2
answers
2.3k
views
2
answers
How to calculate overall coverage in de novo metagenomics assembly?
metagenomics velvet written 2.1 years ago by student-t • 380 • updated 2.1 years ago by Brian Bushnell ♦ 13k
3
votes
2
answers
1.1k
views
2
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velvet user manual - node lengths????
velvet written 2.2 years ago by student-t • 380 • updated 2.2 years ago by lexnederbragt • 1.2k
0
votes
0
answers
429
views
0
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A beginner question about eulerian path algorithms
genome assembly kmer velvet snp written 2.2 years ago by Abhishek • 0
1
vote
2
answers
1.4k
views
2
answers
Error In Velvet 1.2.10 Installation in Kubuntu
installation 1.2.10 velvet written 3.1 years ago by chariko • 30 • updated 2.2 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.1k
views
1
answer
Forum: Behavior of short read assemblers regarding filtering out short contigs
assembly forum spades velvet minia written 2.2 years ago by Rayan Chikhi • 1.2k • updated 2.2 years ago by Damian Kao ♦ 14k
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