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2
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235
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How do I carry out small RNA assembly?
assembly velvet rna-seq sequencing written 7 months ago by jaqx008 • 70
0
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0
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194
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0
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How to run Velvet in multiple k-mers?
genome velvet multiple k-mers written 8 months ago by kanshenglong • 0
7
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1
answer
482
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1
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Using VelvetOptimiser.pl within a forloop
assembly velvet sequencing written 14 months ago by c.e.chong • 20
1
vote
1
answer
479
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1
answer
Calculating alignment/mapping time
calculation ngs mapping velvet denovo assembly written 17 months ago by kumars.sv • 0 • updated 16 months ago by h.mon ♦ 29k
3
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1
answer
1.3k
views
1
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VELVET de novo plant genome, strategy question
dna-seq eucharyotes velvet written 4.1 years ago by dsoronellas • 20 • updated 18 months ago by RamRS ♦ 26k
1
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1
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355
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1
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Using the same read library to scaffold read tracked contigs
reads scaffolding velvet written 23 months ago by deepti1rao • 30 • updated 23 months ago by toralmanvar • 840
0
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0
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791
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0
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Running velveth with multiple k-mer lengths: process stops after first k-mer value
assembly velvet written 23 months ago by Ty • 0
2
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2
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1.0k
views
7 follow
2
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Judging best assembly
assembly cut off kmer coverage velvet written 2.0 years ago by deepti1rao • 30 • updated 24 months ago by Rohit • 1.4k
2
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2
answers
842
views
2
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velvetg failed during the assembly
illumina n50 velvet denovo written 2.3 years ago by slimane.khayi • 40
3
votes
1
answer
504
views
1
answer
lower case bases in Velvet assembly
assembly lower case velvet written 2.4 years ago by toralmanvar • 840 • updated 2.4 years ago by Kevin Blighe ♦ 56k
0
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0
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953
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 2.4 years ago by pablo61991 • 70 • updated 2.4 years ago by genomax ♦ 80k
0
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0
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552
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0
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 2.4 years ago by bioinformatics_bel • 20
0
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0
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1.0k
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0
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 2.5 years ago by Abdul Rafay Khan • 1.1k
6
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2
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3.5k
views
2
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Tracking Reads/Contigs In Velvet
read velvet written 8.5 years ago by Abhi • 1.5k • updated 2.6 years ago by Biostar ♦♦ 20
6
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5
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5.0k
views
5 follow
5
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Metavelvet fails at Scaffolding stage
genome assembly velvet written 5.6 years ago by jamesT • 30 • updated 2.9 years ago by alfbenpa • 10
0
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0
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903
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0
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Metavelvet not producing "meta-velvetg.contigs.fa"
assembly velvet gcc metavelvet written 2.9 years ago by Vimac • 0 • updated 2.9 years ago by WouterDeCoster ♦ 43k
3
votes
1
answer
839
views
1
answer
Velvet Installation Headache
velvet sequencing written 3.0 years ago by richardschumaker126 • 0 • updated 3.0 years ago by k.kathirvel93 • 250
2
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0
answers
791
views
0
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VelvetOptimizer always chooses 31 as the kmer length and never looks further than that?
assembly velvetoptimizer velvet written 3.1 years ago by katherine.lavoie • 0
1
vote
1
answer
1.3k
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1
answer
Velvetg not producing output files
velvetg velvet written 3.2 years ago by Pryce Michener • 10 • updated 3.2 years ago by k.kathirvel93 • 250
0
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0
answers
774
views
0
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VelvetK long Kmers
velvetoptimiser velvet denovo assembly written 3.3 years ago by samuel.lipworth • 30
0
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0
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725
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0
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VelvetOptimiser getting an unknown option error
assembly velvet written 3.4 years ago by Pryce Michener • 10
0
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0
answers
897
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0
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
test_reads.fa assembly velvet data written 3.5 years ago by saranpons3 • 70
1
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1
answer
1.1k
views
1
answer
Total genome size Velvet
assembly genome size velvet written 3.6 years ago by fernanda_boo • 0 • updated 3.6 years ago by mastal511 • 2.0k
8
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0
answers
2.5k
views
0
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 3.7 years ago by rrcutler • 120
4
votes
1
answer
1.5k
views
1
answer
Jellyfish for transcriptome assembly
k-mer assembly rna-seq velvet jellyfish written 3.7 years ago by SJ Basu • 30 • updated 3.7 years ago by Brian Bushnell ♦ 17k
0
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3
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4.4k
views
3
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Velvet: Segmentation fault (core dumped)
assembly next-gen velvet sequencing written 5.3 years ago by ramesh.8v • 210 • updated 3.8 years ago by rafael.d.macho • 0
2
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1
answer
833
views
1
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velvetg problem after Threading through reads
de novo rna-seq velvet written 3.9 years ago by avolkov • 10 • updated 3.9 years ago by Antonio R. Franco • 4.4k
0
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0
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1.7k
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0
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Velvet Assembly Online
assembly velvet written 4.1 years ago by ' • 260
3
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2
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1.5k
views
2
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Velvet Assembly Parameters
assembly velvet written 4.2 years ago by ' • 260 • updated 4.2 years ago by elbecerrasoto • 30
3
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1
answer
1.7k
views
1
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Error installing Velvet assembler on Mac OS X
assembly forum velvet written 4.3 years ago by iferroci • 0 • updated 4.3 years ago by Biostar ♦♦ 20
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