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Velvetg not producing output files

velvetg velvet written 4.1 years ago by Pryce Michener • 10 • updated 4.1 years ago by k.kathirvel93 • 260

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Help: velvetg is trying allocate 2251799813685248 bytes

velvetg metagenomic written 5.9 years ago by SmallChess • 540 • updated 5.9 years ago by Antonio R. Franco • 4.6k

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How do I choose among velvet assembled contigs with different k (k-mer) values?

velvetg assembly contig velvet written 6.5 years ago by whatup • 30 • updated 6.5 years ago by Adrian Pelin • 2.4k

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Recent Replies

C: How to select a "representative" transcript in multiple transcript variants from by svlachavas • 700
Dear Ram, thank you for your reply-unfortunately already I know the VEP option, we utilize ANNOVA...
A: Where can I find data about gene expression in such deseases as bipolar (maniaca by ellimilial • 20
http://psygenet.org concentrates on psychiatric conditions. Leaving a link to relevant search in...
A: RNA-seq ribosomal genes vs proteins by predeus • 1.5k
I think they QC different things - and don't necessarily correlate. Ribosomal RNA shows how much ...
C: Kept getting issue when using ImmGenData() in SingleR by GenoMax ♦ 96k
Are you referring to upgrading macOS? Is `R v.4.0` not supported for your current version of macOS?
C: How to select a "representative" transcript in multiple transcript variants from by GenoMax ♦ 96k
NCBI/EBI's [MANE project][1] is trying to address this for specific reasons. One happens to be a ...
C: Kept getting issue when using ImmGenData() in SingleR by leranwangcs • 20
Thanks, but it doesn't seem to be the solution.... After digging into varies forums, the only wa...
A: Kept getting issue when using ImmGenData() in SingleR by leranwangcs • 20
Thanks, but it doesn't seem to be the solution.... After digging into varies forums, the only wa...
C: Combine two independent Seurat analysis into a single one by igor ♦ 12k
If you don't want to merge them, what do you mean by combining them?
C: How to insert records in a mysql database with click path? by Ram ♦ 32k
Hello projetoic! It appears that your post has been cross-posted to another site: https://bioinf...
C: How to select a "representative" transcript in multiple transcript variants from by Ram ♦ 32k
I don't think so. The closest I've gotten is with the canonical transcript option in VEP.
C: RNA-seq ribosomal genes vs proteins by igor ♦ 12k
This is somewhat of a tangent, but about a third of total transcripts being ribonucleoprotein see...
C: Plot phylogenetic tree with all ancestor nodes by Fatima • 930
Hi! Have you tried these packages? You may want to give them a try. https://cran.r-project.org/...

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