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Velvetg not producing output files

velvetg velvet written 2.1 years ago by Pryce Michener • 10 • updated 2.1 years ago by k.kathirvel93 • 190

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Help: velvetg is trying allocate 2251799813685248 bytes

velvetg metagenomic written 3.9 years ago by SmallChess • 480 • updated 3.9 years ago by Antonio R. Franco • 4.0k

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How do I choose among velvet assembled contigs with different k (k-mer) values?

velvetg assembly contig velvet written 4.5 years ago by whatup • 30 • updated 4.5 years ago by Adrian Pelin • 2.2k

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> could not create index file: myvcffile.fai i would say you choose a VCF file instead of a F...
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I made sure the credentials in the my.cnf file match those in the orthomcl.config (below) db...
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Yeah I did MA-plot and it looks ok, but the thing is that I am using TPMs for subsequent analysis...
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you are right I realized just when I send the post and I tried to change it but I was not able to...
C: Bam file MC tag as integer by chariko • 30
Thank you very much for your anwer @John. You are right this could be an explanation about this ...
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Then I think the what you see is the effect of different normalization. Try plotting the normaliz...
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https://www.gencodegenes.org/human/release_5.html assuming you are referring to release 5. All re...
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I think this is pretty normal. Life don't force to have the same number of genes up and down regu...
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Please use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads logically or...
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Sorry @Devon, from where I could find fasta file for each individual chromosome for hs37d5.fa ?

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