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<prev • 74 results • page 1 of 3 • next >
1
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1
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66
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1
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Annovar and VEP overlapp
annovar vep written 8 days ago by BAGeno • 100 • updated 8 days ago by Kevin Blighe ♦ 33k
0
votes
1
answer
109
views
1
answer
Vep loftool threshold
loftool vep written 14 days ago by BAGeno • 100 • updated 14 days ago by Emily_Ensembl ♦ 16k
7
votes
2
answers
254
views
2
answers
VEP outputs more rs ids than input, why?
ensembl vep snp written 24 days ago by Uday Rangaswamy • 60
9
votes
1
answer
162
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6 follow
1
answer
Assembly used in Variant Effect Predictor
ensembl vep snp written 22 days ago by Uday Rangaswamy • 60 • updated 21 days ago by Emily_Ensembl ♦ 16k
4
votes
1
answer
195
views
1
answer
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 9 weeks ago by claudiadast • 0 • updated 4 weeks ago by Biostar ♦♦ 20
4
votes
2
answers
203
views
2
answers
VEP output and stop gain mutation
ensemble vep emily_ensembl stop gain written 5 weeks ago by seta • 1.1k • updated 5 weeks ago by Ben_Ensembl • 780
10
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2
answers
248
views
2
answers
Querying VEP using REST API
rest ensembl vep python R written 8 weeks ago by Arko • 10 • updated 7 weeks ago by Emily_Ensembl ♦ 16k
5
votes
1
answer
396
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6 follow
1
answer
VEP- What is the best idea to start analyzing?
ensembl vep snp written 9 weeks ago by mostafarafiepour • 60 • updated 9 weeks ago by sadri.amirhossein • 0
21
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1
answer
619
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6 follow
1
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how to generate CNV plot from VEP results
cnv plot vep copy number alteration written 10 weeks ago by nazaninhoseinkhan • 340 • updated 10 weeks ago by Kevin Blighe ♦ 33k
15
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3
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287
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7 follow
3
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Alternative to VEP.
vep snp written 11 weeks ago by joselu • 60 • updated 11 weeks ago by Emily_Ensembl ♦ 16k
1
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1
answer
916
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1
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Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 2.6 years ago by gmora • 20 • updated 12 weeks ago by zx8754 ♦ 6.1k
6
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1
answer
1.2k
views
8 follow
1
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 18 months ago by eurioste • 20 • updated 12 weeks ago by zx8754 ♦ 6.1k
1
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0
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191
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0
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Keep Format and Individual fields after annotating VCF with VEP
vcf annotation vep csq info written 3 months ago by MasMarius • 10
6
votes
1
answer
644
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5 follow
1
answer
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling written 7 months ago by jsneaththompson • 60 • updated 3 months ago by MasMarius • 10
0
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2
answers
238
views
2
answers
problem in getting results from variant effect predictor(VEP)
online vep error message written 3 months ago by nazaninhoseinkhan • 340
3
votes
1
answer
154
views
1
answer
Why is HGVS notation not available for some variants?
hgvs ensembl vep written 4 months ago by jpuntomarcos • 10 • updated 4 months ago by Titus • 770
11
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1
answer
402
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5 follow
1
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VEP output has no gene names
alignment vep sequencing written 4 months ago by banerjeeshayantan • 70 • updated 4 months ago by RamRS ♦ 19k
2
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1
answer
259
views
1
answer
Failed connection to MySQL database with Ensembl VEP script using port 3337
genome vep mysql sequencing written 4 months ago by 162916 • 0
2
votes
1
answer
224
views
1
answer
Interpreting dbNSFP prediction scores
sift vep dbnsfp written 4 months ago by greeness • 20
1
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1
answer
243
views
1
answer
Discrepancy between VEP and IGV
gwas igv vep sequencing written 4 months ago by ijk8qd • 0
8
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2
answers
262
views
2
answers
Location of intronic SNPs from exons
vep exon introns position written 5 months ago by BAGeno • 100 • updated 5 months ago by Emily_Ensembl ♦ 16k
2
votes
0
answers
269
views
0
answers
Large number of overlapped genes/transcripts reported by VEP
vep rna-seq snp written 5 months ago by newbio17 • 0
1
vote
1
answer
1.0k
views
5 follow
1
answer
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 23 months ago by R.Blues • 80 • updated 6 months ago by nicolas.dussex • 30
2
votes
1
answer
384
views
1
answer
Update RefSeq database with Ensembl VEP
ensembl vep refseq written 6 months ago by rbagnall • 1.3k • updated 6 months ago by Emily_Ensembl ♦ 16k
3
votes
1
answer
236
views
1
answer
VEP transcript CDS lenght
ensembl vep transcript written 7 months ago by cristinaluengoagullo • 0 • updated 7 months ago by genomax ♦ 59k
9
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1
answer
335
views
1
answer
VEP annotation doubt with NM (NM_000000.1_dup19)
vep written 7 months ago by Cristian.perez • 40 • updated 7 months ago by Emily_Ensembl ♦ 16k
1
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0
answers
320
views
0
answers
ENSEMBL VEP Inconsistent Results
ensembl vep written 8 months ago by azmanr • 0
1
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1
answer
334
views
1
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Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF?
human genome annotation wannovar vep vcf written 9 months ago by mathisdead • 10 • updated 9 months ago by Pierre Lindenbaum ♦ 115k
5
votes
2
answers
524
views
2
answers
VEP tools output
ensembl vep output written 9 months ago by Nandini • 730 • updated 9 months ago by Ben_Ensembl • 780
2
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1
answer
549
views
1
answer
VEP ENSEMBL unexpected output when considering vcf insertions.
software error ensembl vep snp variants written 12 months ago by cedric.bogaert • 0 • updated 12 months ago by Emily_Ensembl ♦ 16k
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