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<prev • 110 results • page 1 of 4 • next >
1
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0
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89
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LOFTEE doesnt actually annotate Loss-of-function variants
genome ensembl vep snp written 6 days ago by Qingyang Xiao • 130
4
votes
1
answer
83
views
1
answer
Ensembl REST API Optional Parameters
ensembl vep written 15 days ago by Noushin N • 570 • updated 14 days ago by Emily_Ensembl ♦ 20k
5
votes
1
answer
98
views
1
answer
How to get rsid during the variant annotation using VEP (offline mode)
ensembl vep annotation written 15 days ago by seta • 1.2k • updated 15 days ago by Emily_Ensembl ♦ 20k
0
votes
1
answer
103
views
1
answer
an efficient way to annotate mutations from vcf files using multiple annotation files
lovd ensembl clinvar vep cadd written 5 weeks ago by lait • 140 • updated 4 weeks ago by Kevin Blighe ♦ 53k
1
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1
answer
102
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1
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The VEP output for the variants of whole genome sequencing
ensembl vep whole genome sequencing written 5 weeks ago by seta • 1.2k
6
votes
1
answer
249
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1
answer
Working with VEP in anaconda
anaconda vep conda snp rna-seq written 7 weeks ago by luzglongoria • 40 • updated 7 weeks ago by Emily_Ensembl ♦ 20k
2
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0
answers
110
views
0
answers
Variants effect predict
annovar prediction vep mutation written 8 weeks ago by yehchan57 • 10
1
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0
answers
84
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0
answers
Where to get GERP_scores.final.sorted.txt.gz for VEP analysis
vep hail gerp written 8 weeks ago by nikitavlassenko • 40 • updated 8 weeks ago by genomax ♦ 76k
0
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0
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124
views
0
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Filtering large VCFs by allele freqency using bcftools split-vep function
split-vep bcftools vep written 11 weeks ago by omid.alavijeh • 40
0
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2
answers
127
views
2
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VEP specific celltype defining regulatory variants
ensembl celltype vep regulatory written 3 months ago by c.clarido • 50
2
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1
answer
225
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1
answer
VEP: filter_vep, custom VCF annotation (kaviar)
kaviar filter_vep vep written 3 months ago by c.clarido • 50 • updated 3 months ago by Emily_Ensembl ♦ 20k
2
votes
1
answer
157
views
1
answer
Add sample number/name column to VEP result
vcf vep written 3 months ago by Abdul Rafay Khan • 1.1k • updated 3 months ago by Emily_Ensembl ♦ 20k
4
votes
1
answer
169
views
1
answer
Classify extracted variants
gene vep snp sequencing written 4 months ago by ola.helenamartins • 0 • updated 4 months ago by zx8754 ♦ 8.9k
1
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0
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243
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0
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Intalling Ensembl VEP in windows 10
ensembl next-gen sequence vep written 4 months ago by nachochie77 • 0
1
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1
answer
153
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1
answer
A small detail when use VEP
vep written 6 months ago by Laven9 • 0 • updated 6 months ago by WouterDeCoster ♦ 42k
0
votes
0
answers
286
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0
answers
ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
annotation vep gnomad ensembl written 6 months ago by c.clarido • 50
2
votes
2
answers
243
views
2
answers
protein domain start-stop codons database
domain codon vep database written 6 months ago by cocchi.e89 • 30 • updated 6 months ago by genomax ♦ 76k
1
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0
answers
323
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0
answers
protein domain "official" DB
vep variation protein human domains written 6 months ago by cocchi.e89 • 30
1
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2
answers
209
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2
answers
uniprot variant classification DB retireve
variant vep uniprot ensembl written 6 months ago by cocchi.e89 • 30 • updated 6 months ago by Elisabeth Gasteiger • 1.7k
0
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0
answers
1.6k
views
0
answers
VEP result table, REF, ALT, CSQ meaning.
assembly vep snp written 3.9 years ago by dirranrak • 10 • updated 6 months ago by zx8754 ♦ 8.9k
4
votes
1
answer
221
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1
answer
IMPACT rating in VEP and compatibility with which tools?
impact rating vep written 7 months ago by Shicheng Guo • 8.0k • updated 7 months ago by Ben_Ensembl • 1.1k
0
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0
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374
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0
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patients hg19 VEP Fasta and CACHE GRCh37
ensembl grch37 vep hg19 written 9 months ago by cocchi.e89 • 30 • updated 7 months ago by Biostar ♦♦ 20
1
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0
answers
256
views
0
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unauthorized: authentication required error in ensembl-vep installation
vep vep (variant effect predictor) written 7 months ago by Shicheng Guo • 8.0k
4
votes
1
answer
597
views
1
answer
How does VEP decide on canonical transcripts and is there a list?
assembly vep written 7 months ago by hagen.klett • 0
8
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4
answers
1.5k
views
4
answers
Protein coding transcripts with vep
annotation vep variants written 3.9 years ago by onemoreuser • 10 • updated 8 months ago by abio • 0
3
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1
answer
304
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1
answer
Ensembl variant effect predictor fails if REF or ALT allele has a length around 0.5 million
vcf ensembl vep vcf annotation written 8 months ago by mo.imranshah • 10
3
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1
answer
424
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1
answer
ensembl VEP variant not annotated
ensembl variants vep annotation written 8 months ago by cocchi.e89 • 30
3
votes
1
answer
388
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1
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The content of variation (VEP) file from Ensembl
ensembl vep human written 8 months ago by seta • 1.2k • updated 8 months ago by Emily_Ensembl ♦ 20k
2
votes
1
answer
361
views
1
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Calculate the allele frequency of specific sub-population using VEP
allele frequency vep written 8 months ago by Abdul Rafay Khan • 1.1k • updated 8 months ago by Emily_Ensembl ♦ 20k
1
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1
answer
495
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1
answer
VEP dbNSFP plugin GRCh37
ensembl anotation dbnsfp vep plugin written 9 months ago by cocchi.e89 • 30 • updated 9 months ago by Emily_Ensembl ♦ 20k
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