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108
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No results from VEP. What am I doing wrong?
software error vep snp written 28 days ago by rsnewbie0 • updated 28 days ago by zx87549.4k
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1
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73
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1
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VEP output and protein change
vcf vep written 28 days ago by MAPK1.6k • updated 28 days ago by RamRS28k
2
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1
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72
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1
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How to combining VEP and VCF in one file
vcf vep written 4 weeks ago by MAPK1.6k • updated 4 weeks ago by Pierre Lindenbaum129k
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2
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90
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2
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VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 4 weeks ago by Chadi Saad70 • updated 4 weeks ago by Michal @Ensembl40
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104
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0
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124
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2
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134
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1
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VEP is returning MOTIF_NAME values not recognised by Ensembl
ensembl vep snp written 8 weeks ago by jeni20 • updated 7 weeks ago by Michal @Ensembl40
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95
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2
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140
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2
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0
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1
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132
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1
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VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 10 weeks ago by cocchi.e8980 • updated 10 weeks ago by Ben_Ensembl1.5k
2
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1
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129
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1
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VEP 100 and GRCh37
fasta ensembl grch37 vep written 11 weeks ago by cocchi.e8980 • updated 11 weeks ago by Ben_Ensembl1.5k
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1
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211
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1
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Get clinVar info for SNP with VEP
vep snp written 11 weeks ago by Eugene A40 • updated 11 weeks ago by Kevin Blighe63k
3
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1
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128
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1
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VEP outputs the similar INFO CSQ data multiple times
vcf tsv vep ensembl annotation written 12 weeks ago by magnolia0 • updated 12 weeks ago by Pierre Lindenbaum129k
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1
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139
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1
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Deformed VCF header and VEP
vcf annotation vep written 3 months ago by plink_985750 • updated 3 months ago by Astrid_Ensembl320
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236
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DBD::SQLite::db prepare failed: no such table: phylocsf_summary
vep phylocsf loftee written 5 months ago by nikitavlassenko50 • updated 3 months ago by Biostar ♦♦ 20
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1
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110
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1
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using vep with custom genome
vep snp written 3 months ago by etay.rot10 • updated 3 months ago by Ben_Ensembl1.5k
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1
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373
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1
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0
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1
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123
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1
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VEP MutationAssessor output
vep mutationassessor variant human written 3 months ago by cocchi.e8980 • updated 3 months ago by Ben_Ensembl1.5k
3
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1
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140
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1
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VEP order most severe to least
variant consequence wgs vep largevcf written 4 months ago by shwethacm210 • updated 4 months ago by Ben_Ensembl1.5k
2
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1
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171
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1
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Alternative allele in VEP output
vcf wgs vep written 4 months ago by A3.8k • updated 4 months ago by Ben_Ensembl1.5k
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293
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0
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0
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229
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Issues installing PhyloCSF for VEP: opam install ocamlbuild
ensembl vep phylocsf written 5 months ago by nikitavlassenko50 • updated 5 months ago by ATpoint36k
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173
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0
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3
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1
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346
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1
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Running VEP without --cache
vep written 5 months ago by nikitavlassenko50 • updated 5 months ago by ATpoint36k
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2
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724
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2
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3
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2
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219
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VEP not returning gnomAD AF
vep gnomad written 5 months ago by michal.inbar0 • updated 5 months ago by Ben_Ensembl1.5k
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312
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Does GNOMAD use all LOFTEE LoF filters?
ensembl lof vep gnomad loftee written 5 months ago by brismiller40 • updated 5 months ago by RamRS28k
5
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1
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374
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1
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VEP GUI not returning LOFTEE output?
ensembl vep loftee written 6 months ago by brismiller40 • updated 6 months ago by Ben_Ensembl1.5k
5
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1
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176
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1
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"gnomad_allele" field in new VEP
vep gnomad written 6 months ago by ori.inbar10 • updated 6 months ago by Emily_Ensembl21k
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1
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261
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1
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Adding consequences field (INFO) when using --allow_non_variant in VEP
vcf annotation vep written 6 months ago by magnolia0 • updated 6 months ago by Emily_Ensembl21k
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