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<prev • 78 results • page 1 of 3 • next >
2
votes
0
answers
76
views
0
answers
Updated Alignment of current refseq transcripts against hg19
genome refseq alignment vep hg19 written 12 days ago by cruckert • 0
14
votes
2
answers
137
views
7 follow
2
answers
bcftools query missense_variant SNPs from gnomad VCF files
bcftools vep written 17 days ago by Shicheng Guo • 7.4k • updated 17 days ago by Emily_Ensembl ♦ 17k
1
vote
1
answer
129
views
1
answer
Conserv CSQ and output plugin
ensembl vep csq written 4 weeks ago by robertclerc • 0 • updated 4 weeks ago by Emily_Ensembl ♦ 17k
1
vote
1
answer
328
views
1
answer
Using VEP to get gnomAD frequencies
annotation frequency vep gnomad allele frequency written 7 weeks ago by brett.spurrier • 20 • updated 6 weeks ago by Emily_Ensembl ♦ 17k
2
votes
1
answer
120
views
1
answer
Annovar and VEP overlapp
annovar vep written 9 weeks ago by BAGeno • 110 • updated 9 weeks ago by Kevin Blighe ♦ 37k
0
votes
1
answer
177
views
1
answer
Vep loftool threshold
loftool vep written 10 weeks ago by BAGeno • 110 • updated 10 weeks ago by Emily_Ensembl ♦ 17k
7
votes
1
answer
332
views
1
answer
VEP outputs more rs ids than input, why?
ensembl vep snp written 12 weeks ago by Uday Rangaswamy • 100
9
votes
1
answer
226
views
6 follow
1
answer
Assembly used in Variant Effect Predictor
ensembl vep snp written 11 weeks ago by Uday Rangaswamy • 100 • updated 11 weeks ago by Emily_Ensembl ♦ 17k
4
votes
1
answer
256
views
1
answer
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 4 months ago by claudiadast • 0 • updated 3 months ago by Biostar ♦♦ 20
4
votes
2
answers
271
views
2
answers
VEP output and stop gain mutation
ensemble vep emily_ensembl stop gain written 3 months ago by seta • 1.1k • updated 3 months ago by Ben_Ensembl • 930
10
votes
2
answers
316
views
2
answers
Querying VEP using REST API
rest ensembl vep python R written 3 months ago by Arko • 10 • updated 3 months ago by Emily_Ensembl ♦ 17k
5
votes
1
answer
481
views
6 follow
1
answer
VEP- What is the best idea to start analyzing?
ensembl vep snp written 4 months ago by mostafarafiepour • 60 • updated 4 months ago by sadri.amirhossein • 0
21
votes
1
answer
781
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6 follow
1
answer
how to generate CNV plot from VEP results
cnv plot vep copy number alteration written 4 months ago by nazaninhoseinkhan • 360 • updated 4 months ago by Kevin Blighe ♦ 37k
15
votes
3
answers
369
views
7 follow
3
answers
Alternative to VEP.
vep snp written 4 months ago by joselu • 60 • updated 4 months ago by Emily_Ensembl ♦ 17k
1
vote
1
answer
954
views
1
answer
Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 2.7 years ago by gmora • 20 • updated 4 months ago by zx8754 ♦ 6.5k
6
votes
1
answer
1.3k
views
8 follow
1
answer
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 20 months ago by eurioste • 20 • updated 4 months ago by zx8754 ♦ 6.5k
1
vote
0
answers
259
views
0
answers
Keep Format and Individual fields after annotating VCF with VEP
vcf annotation vep csq info written 5 months ago by MasMarius • 10
6
votes
1
answer
809
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5 follow
1
answer
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling written 9 months ago by jsneaththompson • 70 • updated 5 months ago by MasMarius • 10
0
votes
2
answers
284
views
2
answers
problem in getting results from variant effect predictor(VEP)
online vep error message written 5 months ago by nazaninhoseinkhan • 360
3
votes
1
answer
189
views
1
answer
Why is HGVS notation not available for some variants?
hgvs ensembl vep written 6 months ago by jpuntomarcos • 20 • updated 6 months ago by Titus • 770
11
votes
1
answer
466
views
5 follow
1
answer
VEP output has no gene names
alignment vep sequencing written 6 months ago by banerjeeshayantan • 80 • updated 6 months ago by RamRS ♦ 20k
2
votes
1
answer
358
views
1
answer
Failed connection to MySQL database with Ensembl VEP script using port 3337
genome vep mysql sequencing written 6 months ago by 162916 • 0
2
votes
1
answer
283
views
1
answer
Interpreting dbNSFP prediction scores
sift vep dbnsfp written 6 months ago by greeness • 20
1
vote
1
answer
302
views
1
answer
Discrepancy between VEP and IGV
gwas igv vep sequencing written 6 months ago by ijk8qd • 0
8
votes
2
answers
341
views
2
answers
Location of intronic SNPs from exons
vep exon introns position written 7 months ago by BAGeno • 110 • updated 7 months ago by Emily_Ensembl ♦ 17k
2
votes
0
answers
316
views
0
answers
Large number of overlapped genes/transcripts reported by VEP
vep rna-seq snp written 7 months ago by newbio17 • 10
1
vote
1
answer
1.1k
views
5 follow
1
answer
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 2.1 years ago by R.Blues • 80 • updated 8 months ago by nicolas.dussex • 30
2
votes
1
answer
472
views
1
answer
Update RefSeq database with Ensembl VEP
ensembl vep refseq written 8 months ago by rbagnall • 1.3k • updated 8 months ago by Emily_Ensembl ♦ 17k
3
votes
1
answer
268
views
1
answer
VEP transcript CDS lenght
ensembl vep transcript written 9 months ago by cristinaluengoagullo • 0 • updated 9 months ago by genomax ♦ 62k
9
votes
1
answer
377
views
1
answer
VEP annotation doubt with NM (NM_000000.1_dup19)
vep written 9 months ago by Cristian.perez • 50 • updated 9 months ago by Emily_Ensembl ♦ 17k
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