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2
votes
1
answer
75
views
1
answer
VEP: filter_vep, custom VCF annotation (kaviar)
kaviar filter_vep vep written 1 day ago by c.clarido • 50 • updated 11 hours ago by Emily_Ensembl ♦ 19k
2
votes
1
answer
97
views
1
answer
Add sample number/name column to VEP result
vcf vep written 11 days ago by Abdul Rafay Khan • 1.0k • updated 11 days ago by Emily_Ensembl ♦ 19k
4
votes
1
answer
120
views
1
answer
Classify extracted variants
gene vep snp sequencing written 21 days ago by ola.helenamartins • 0 • updated 20 days ago by zx8754 ♦ 8.2k
1
vote
0
answers
157
views
0
answers
Intalling Ensembl VEP in windows 10
ensembl next-gen sequence vep written 6 weeks ago by nachochie77 • 0
1
vote
1
answer
113
views
1
answer
A small detail when use VEP
vep written 3 months ago by Laven9 • 0 • updated 3 months ago by WouterDeCoster ♦ 41k
0
votes
0
answers
179
views
0
answers
ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
annotation vep gnomad ensembl written 3 months ago by c.clarido • 50
2
votes
2
answers
188
views
2
answers
protein domain start-stop codons database
domain codon vep database written 3 months ago by cocchi.e89 • 30 • updated 3 months ago by genomax ♦ 72k
1
vote
0
answers
218
views
0
answers
protein domain "official" DB
vep variation protein human domains written 3 months ago by cocchi.e89 • 30
1
vote
2
answers
153
views
2
answers
uniprot variant classification DB retireve
variant vep uniprot ensembl written 3 months ago by cocchi.e89 • 30 • updated 3 months ago by Elisabeth Gasteiger • 1.6k
0
votes
0
answers
1.5k
views
0
answers
VEP result table, REF, ALT, CSQ meaning.
assembly vep snp written 3.6 years ago by dirranrak • 10 • updated 3 months ago by zx8754 ♦ 8.2k
4
votes
1
answer
147
views
1
answer
IMPACT rating in VEP and compatibility with which tools?
impact rating vep written 4 months ago by Shicheng Guo • 7.8k • updated 4 months ago by Ben_Ensembl • 1.0k
0
votes
0
answers
278
views
0
answers
patients hg19 VEP Fasta and CACHE GRCh37
ensembl grch37 vep hg19 written 5 months ago by cocchi.e89 • 30 • updated 4 months ago by Biostar ♦♦ 20
1
vote
0
answers
161
views
0
answers
unauthorized: authentication required error in ensembl-vep installation
vep vep (variant effect predictor) written 4 months ago by Shicheng Guo • 7.8k
4
votes
1
answer
348
views
1
answer
How does VEP decide on canonical transcripts and is there a list?
assembly vep written 4 months ago by hagen.klett • 0
8
votes
4
answers
1.4k
views
4
answers
Protein coding transcripts with vep
annotation vep variants written 3.6 years ago by onemoreuser • 10 • updated 5 months ago by abio • 0
3
votes
1
answer
239
views
1
answer
Ensembl variant effect predictor fails if REF or ALT allele has a length around 0.5 million
vcf ensembl vep vcf annotation written 5 months ago by mo.imranshah • 10
3
votes
1
answer
288
views
1
answer
ensembl VEP variant not annotated
ensembl variants vep annotation written 5 months ago by cocchi.e89 • 30
3
votes
1
answer
303
views
1
answer
The content of variation (VEP) file from Ensembl
ensembl vep human written 5 months ago by seta • 1.2k • updated 5 months ago by Emily_Ensembl ♦ 19k
2
votes
1
answer
267
views
1
answer
Calculate the allele frequency of specific sub-population using VEP
allele frequency vep written 5 months ago by Abdul Rafay Khan • 1.0k • updated 5 months ago by Emily_Ensembl ♦ 19k
1
vote
1
answer
324
views
1
answer
VEP dbNSFP plugin GRCh37
ensembl anotation dbnsfp vep plugin written 5 months ago by cocchi.e89 • 30 • updated 5 months ago by Emily_Ensembl ♦ 19k
3
votes
1
answer
308
views
1
answer
VEP FASTA "toplevel" vs "primary_assembly"
fasta ensembl vep written 5 months ago by cocchi.e89 • 30
0
votes
0
answers
380
views
0
answers
VEP annotation of Manta BND
annnotation vep written 6 months ago by lindak • 0 • updated 6 months ago by Emily_Ensembl ♦ 19k
7
votes
2
answers
652
views
5 follow
2
answers
VEP output and stop gain mutation
ensembl vep stop gain written 11 months ago by seta • 1.2k • updated 7 months ago by zx8754 ♦ 8.2k
0
votes
0
answers
921
views
0
answers
Bio-DB-HTS installation and ensembl-vep
bio-db-hts vep ensembl written 7 months ago by felipead66 • 30 • updated 7 months ago by Emily_Ensembl ♦ 19k
3
votes
0
answers
304
views
0
answers
Updated Alignment of current refseq transcripts against hg19
genome refseq alignment vep hg19 written 8 months ago by cruckert • 10
14
votes
2
answers
606
views
7 follow
2
answers
bcftools query missense_variant SNPs from gnomad VCF files
bcftools vep written 8 months ago by Shicheng Guo • 7.8k • updated 8 months ago by Emily_Ensembl ♦ 19k
1
vote
1
answer
326
views
1
answer
Conserv CSQ and output plugin
ensembl vep csq written 9 months ago by robertclerc • 0 • updated 9 months ago by Emily_Ensembl ♦ 19k
1
vote
1
answer
920
views
1
answer
Using VEP to get gnomAD frequencies
annotation frequency vep gnomad allele frequency written 9 months ago by brett.spurrier • 20 • updated 9 months ago by Emily_Ensembl ♦ 19k
2
votes
1
answer
329
views
1
answer
Annovar and VEP overlapp
annovar vep written 10 months ago by BAGeno • 140 • updated 10 months ago by Kevin Blighe ♦ 49k
0
votes
1
answer
496
views
1
answer
Vep loftool threshold
loftool vep written 10 months ago by BAGeno • 140 • updated 10 months ago by Emily_Ensembl ♦ 19k
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