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<prev • 140 results • page 1 of 5 • next >
0
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108
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0
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No results from VEP. What am I doing wrong?
software error vep snp written 28 days ago by rsnewbie • 0 • updated 28 days ago by zx8754 ♦ 9.4k
3
votes
1
answer
73
views
1
answer
VEP output and protein change
vcf vep written 28 days ago by MAPK • 1.6k • updated 28 days ago by RamRS ♦ 28k
2
votes
1
answer
72
views
1
answer
How to combining VEP and VCF in one file
vcf vep written 4 weeks ago by MAPK • 1.6k • updated 4 weeks ago by Pierre Lindenbaum ♦ 129k
0
votes
2
answers
90
views
2
answers
VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 4 weeks ago by Chadi Saad • 70 • updated 4 weeks ago by Michal @Ensembl • 40
1
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0
answers
104
views
0
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Annotate hs37d5 genome calls using VEP
annotation 1kgenomes vep hs37d5 written 6 weeks ago by igor • 0
0
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0
answers
124
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0
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Why snpEff annotates same region with different "effects" and why some effects are given in combination? What is the criteria to filter this annotation?
exome vcf snpeff vep variantannotation written 7 weeks ago by svp • 100
2
votes
1
answer
134
views
1
answer
VEP is returning MOTIF_NAME values not recognised by Ensembl
ensembl vep snp written 8 weeks ago by jeni • 20 • updated 7 weeks ago by Michal @Ensembl • 40
0
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0
answers
95
views
0
answers
Error while running vcf2maf tool
variant-calling maf vep vcf2maf vcfs written 8 weeks ago by Jordan • 1.1k
1
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2
answers
140
views
2
answers
Conversion of Vep.vcf to MAF format?
maf genome vep snp cancer written 10 weeks ago by Thind Amarinder • 30
0
votes
1
answer
132
views
1
answer
VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 10 weeks ago by cocchi.e89 • 80 • updated 10 weeks ago by Ben_Ensembl • 1.5k
2
votes
1
answer
129
views
1
answer
VEP 100 and GRCh37
fasta ensembl grch37 vep written 11 weeks ago by cocchi.e89 • 80 • updated 11 weeks ago by Ben_Ensembl • 1.5k
9
votes
1
answer
211
views
1
answer
Get clinVar info for SNP with VEP
vep snp written 11 weeks ago by Eugene A • 40 • updated 11 weeks ago by Kevin Blighe ♦ 63k
3
votes
1
answer
128
views
1
answer
VEP outputs the similar INFO CSQ data multiple times
vcf tsv vep ensembl annotation written 12 weeks ago by magnolia • 0 • updated 12 weeks ago by Pierre Lindenbaum ♦ 129k
0
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1
answer
139
views
1
answer
Deformed VCF header and VEP
vcf annotation vep written 3 months ago by plink_9857 • 50 • updated 3 months ago by Astrid_Ensembl • 320
0
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0
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236
views
0
answers
DBD::SQLite::db prepare failed: no such table: phylocsf_summary
vep phylocsf loftee written 5 months ago by nikitavlassenko • 50 • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
110
views
1
answer
using vep with custom genome
vep snp written 3 months ago by etay.rot • 10 • updated 3 months ago by Ben_Ensembl • 1.5k
6
votes
1
answer
373
views
1
answer
News: Ensembl reduced functionality: 10th March-16th April 2020
ensembl news vep service blat written 5 months ago by Ben_Ensembl • 1.5k
0
votes
1
answer
123
views
1
answer
VEP MutationAssessor output
vep mutationassessor variant human written 3 months ago by cocchi.e89 • 80 • updated 3 months ago by Ben_Ensembl • 1.5k
3
votes
1
answer
140
views
1
answer
VEP order most severe to least
variant consequence wgs vep largevcf written 4 months ago by shwethacm • 210 • updated 4 months ago by Ben_Ensembl • 1.5k
2
votes
1
answer
171
views
1
answer
Alternative allele in VEP output
vcf wgs vep written 4 months ago by A • 3.8k • updated 4 months ago by Ben_Ensembl • 1.5k
0
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0
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293
views
0
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Faster filtering of vcfs using split-vep over filter_vep
split-vep vcf vep bcftools written 5 months ago by tacrolimus • 40
0
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0
answers
229
views
0
answers
Issues installing PhyloCSF for VEP: opam install ocamlbuild
ensembl vep phylocsf written 5 months ago by nikitavlassenko • 50 • updated 5 months ago by ATpoint ♦ 36k
0
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0
answers
173
views
0
answers
Debugging VEP issue: no debug output present
debugging vep written 5 months ago by nikitavlassenko • 50
3
votes
1
answer
346
views
1
answer
Running VEP without --cache
vep written 5 months ago by nikitavlassenko • 50 • updated 5 months ago by ATpoint ♦ 36k
5
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2
answers
724
views
2
answers
Issues installing new VEP: Bio::DB:HTS library not found
vep written 5 months ago by nikitavlassenko • 50
3
votes
2
answers
219
views
2
answers
VEP not returning gnomAD AF
vep gnomad written 5 months ago by michal.inbar • 0 • updated 5 months ago by Ben_Ensembl • 1.5k
0
votes
0
answers
312
views
0
answers
Does GNOMAD use all LOFTEE LoF filters?
ensembl lof vep gnomad loftee written 5 months ago by brismiller • 40 • updated 5 months ago by RamRS ♦ 28k
5
votes
1
answer
374
views
1
answer
VEP GUI not returning LOFTEE output?
ensembl vep loftee written 6 months ago by brismiller • 40 • updated 6 months ago by Ben_Ensembl • 1.5k
5
votes
1
answer
176
views
1
answer
"gnomad_allele" field in new VEP
vep gnomad written 6 months ago by ori.inbar • 10 • updated 6 months ago by Emily_Ensembl ♦ 21k
0
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1
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261
views
1
answer
Adding consequences field (INFO) when using --allow_non_variant in VEP
vcf annotation vep written 6 months ago by magnolia • 0 • updated 6 months ago by Emily_Ensembl ♦ 21k
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