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8
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1
answer
73
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1
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What is the VEP Impact column?
consequence sequencing vep variant ensembl written 8 days ago by nub620 • updated 6 days ago by werewxcvv0
2
votes
1
answer
75
views
1
answer
How to determine significance of a variant?
next-gen vep written 10 days ago by nub620 • updated 10 days ago by Hamid Ghaedi580
0
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0
answers
141
views
0
answers
VEP - gnomAD v3 (hg38) annotation AF
vep hg38 gnomad annotation written 6 weeks ago by cocchi.e89110 • updated 22 days ago by Biostar ♦♦ 20
5
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1
answer
137
views
1
answer
Finding unique variants by sample ID in a multisample vcf
vcf bcftools vep snp written 5 weeks ago by tacrolimus50 • updated 5 weeks ago by brunobsouzaa370
2
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0
answers
107
views
0
answers
2
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1
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130
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1
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Use VEP (ensembl) with specific database e.g. dbSNP 144
ensembl vep snp mutation annotation written 8 weeks ago by romain.lannes80 • updated 8 weeks ago by Ben_Ensembl1.6k
0
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0
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118
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0
answers
0
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1
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323
views
1
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4
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2
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237
views
2
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1
vote
1
answer
169
views
1
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Geneid between regions of chromosome
ensembl biomart vep geneid written 10 weeks ago by devarora240 • updated 10 weeks ago by Ben_Ensembl1.6k
0
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0
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162
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0
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No results from VEP. What am I doing wrong?
software error vep snp written 3 months ago by rsnewbie0 • updated 3 months ago by zx87549.7k
3
votes
1
answer
118
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1
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VEP output and protein change
vcf vep written 3 months ago by MAPK1.6k • updated 3 months ago by RamRS30k
2
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1
answer
120
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1
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How to combining VEP and VCF in one file
vcf vep written 3 months ago by MAPK1.6k • updated 3 months ago by Pierre Lindenbaum131k
0
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2
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165
views
2
answers
VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 4 months ago by Chadi Saad80 • updated 3 months ago by Michal @Ensembl70
1
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0
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191
views
0
answers
0
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0
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199
views
0
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2
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1
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173
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1
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VEP is returning MOTIF_NAME values not recognised by Ensembl
ensembl vep snp written 4 months ago by jeni30 • updated 4 months ago by Michal @Ensembl70
0
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0
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192
views
0
answers
1
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2
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217
views
2
answers
0
votes
1
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226
views
1
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VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 5 months ago by cocchi.e89110 • updated 5 months ago by Ben_Ensembl1.6k
2
votes
1
answer
199
views
1
answer
VEP 100 and GRCh37
fasta ensembl grch37 vep written 5 months ago by cocchi.e89110 • updated 5 months ago by Ben_Ensembl1.6k
9
votes
1
answer
333
views
1
answer
Get clinVar info for SNP with VEP
vep snp written 5 months ago by Eugene A80 • updated 5 months ago by Kevin Blighe66k
3
votes
1
answer
167
views
1
answer
VEP outputs the similar INFO CSQ data multiple times
vcf tsv vep ensembl annotation written 5 months ago by magnolia0 • updated 5 months ago by Pierre Lindenbaum131k
0
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1
answer
183
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1
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Deformed VCF header and VEP
vcf annotation vep written 6 months ago by plink_985750 • updated 6 months ago by Astrid_Ensembl330
0
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0
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364
views
0
answers
DBD::SQLite::db prepare failed: no such table: phylocsf_summary
vep phylocsf loftee written 8 months ago by nikitavlassenko50 • updated 6 months ago by Biostar ♦♦ 20
3
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1
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166
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1
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using vep with custom genome
vep snp written 6 months ago by etay.rot10 • updated 6 months ago by Ben_Ensembl1.6k
6
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1
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427
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1
answer
0
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1
answer
154
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1
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VEP MutationAssessor output
vep mutationassessor variant human written 6 months ago by cocchi.e89110 • updated 6 months ago by Ben_Ensembl1.6k
3
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1
answer
195
views
1
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VEP order most severe to least
variant consequence wgs vep largevcf written 7 months ago by shwethacm210 • updated 7 months ago by Ben_Ensembl1.6k
2
votes
1
answer
215
views
1
answer
Alternative allele in VEP output
vcf wgs vep written 7 months ago by A3.9k • updated 7 months ago by Ben_Ensembl1.6k
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