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VEP order most severe to least
variant consequence wgs vep largevcf written 3 days ago by shwethacm210 • updated 3 days ago by Ben_Ensembl1.3k
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79
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1
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Alternative allele in VEP output
vcf wgs vep written 5 days ago by A3.7k • updated 5 days ago by Ben_Ensembl1.3k
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133
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105
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81
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Issues installing PhyloCSF for VEP: opam install ocamlbuild
ensembl vep phylocsf written 6 weeks ago by nikitavlassenko50 • updated 6 weeks ago by ATpoint32k
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109
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3
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143
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Running VEP without --cache
vep written 6 weeks ago by nikitavlassenko50 • updated 6 weeks ago by ATpoint32k
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257
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3
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2
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105
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VEP not returning gnomAD AF
vep gnomad written 6 weeks ago by michal.inbar0 • updated 6 weeks ago by Ben_Ensembl1.3k
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140
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Does GNOMAD use all LOFTEE LoF filters?
ensembl lof vep gnomad loftee written 8 weeks ago by brismiller20 • updated 8 weeks ago by RamRS26k
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159
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VEP GUI not returning LOFTEE output?
ensembl vep loftee written 8 weeks ago by brismiller20 • updated 8 weeks ago by Ben_Ensembl1.3k
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125
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"gnomad_allele" field in new VEP
vep gnomad written 9 weeks ago by ori.inbar10 • updated 9 weeks ago by Emily_Ensembl20k
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164
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Adding consequences field (INFO) when using --allow_non_variant in VEP
vcf annotation vep written 10 weeks ago by magnolia0 • updated 10 weeks ago by Emily_Ensembl20k
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261
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4
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125
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Ensembl REST API Optional Parameters
ensembl vep written 12 weeks ago by Noushin N580 • updated 12 weeks ago by Emily_Ensembl20k
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178
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How to get rsid during the variant annotation using VEP (offline mode)
ensembl vep annotation written 12 weeks ago by seta1.2k • updated 12 weeks ago by Emily_Ensembl20k
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149
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1
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135
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6
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394
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Working with VEP in anaconda
anaconda vep conda snp rna-seq written 4 months ago by luzglongoria40 • updated 4 months ago by Emily_Ensembl20k
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142
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0
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1
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115
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Where to get GERP_scores.final.sorted.txt.gz for VEP analysis
vep hail gerp written 4 months ago by nikitavlassenko50 • updated 4 months ago by genomax80k
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144
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295
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VEP: filter_vep, custom VCF annotation (kaviar)
kaviar filter_vep vep written 5 months ago by c.clarido50 • updated 5 months ago by Emily_Ensembl20k
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179
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Add sample number/name column to VEP result
vcf vep written 6 months ago by Abdul Rafay Khan1.1k • updated 6 months ago by Emily_Ensembl20k
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189
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Classify extracted variants
gene vep snp sequencing written 6 months ago by ola.helenamartins0 • updated 6 months ago by zx87549.1k
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307
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177
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A small detail when use VEP
vep written 8 months ago by Laven90 • updated 8 months ago by WouterDeCoster43k
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312
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