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0
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174
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5 follow
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VEP and Annovar Annotation
annovar vep written 23 days ago by BAGeno • 20
4
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2
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169
views
2
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How to filter mutant allele frequency in Variant Effect Predictor (VEP)?
perl vcf vep ensembl written 9 weeks ago by kin182 • 0 • updated 9 weeks ago by EnsemblWill • 540
1
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0
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108
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0
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Transcript IDs from VEP Annotation
gene transcript id next-gen vep sequencing written 9 weeks ago by seq_ngs • 0
3
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156
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes ensemble vep vcf2maf written 9 weeks ago by eurioste • 20
3
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0
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175
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0
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Forum: Survey for VEP users
ensembl survey variation vep forum written 3 months ago by Emily_Ensembl ♦ 12k
2
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2
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224
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2
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How can I make VEP recognize header lines in my VCF?
vcf annotation vep written 3 months ago by Chris Miller ♦ 18k
2
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2
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320
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2
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LD calculation using LD plugin for VEP
linkage disequilibrium vep ld written 4 months ago by eXpander • 70 • updated 4 months ago by Ben_Ensembl • 300
2
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0
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312
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0
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Job: 2x Ensembl Jobs, EMBL-EBI, near Cambridge
genome chip-seq job bioinformatics ensembl vep written 5 months ago by Ensembl Helen • 60
1
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0
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360
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0
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Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 7 months ago by R.Blues • 60
3
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2
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1.1k
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2
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VEP failed to parse TBX_GENERIC error
ensembl vep snp variant effect predictor written 22 months ago by bruce.moran • 240 • updated 8 months ago by Yunling • 0
0
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1
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552
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1
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Using VEP: Variant Effect Predictor, how do I get the 1000G global Allele Frequency of my alternate alleles specifically?
annovar vep variant effect predictor written 10 months ago by anp375 • 80 • updated 8 months ago by EnsemblWill • 540
1
vote
1
answer
407
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1
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How do I get GO term annotations using VEP?
gene ensembl vep go ontology written 10 months ago by anp375 • 80 • updated 8 months ago by Ben_Ensembl • 300
3
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1
answer
319
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1
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How to select predefine transcript when annotate VCF
vcf annotation snpeff vep written 9 months ago by Paul • 620
1
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1
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449
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1
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Issues with variant effect predictor installation
perl ubuntu vep variant effect predictor written 9 months ago by cookersjs • 10
3
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0
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327
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0
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Human ancestor for hg38
human_ancestor vep lof hg38 loftee written 9 months ago by matthias.desmet • 30
4
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1
answer
1.8k
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1
answer
Trouble installing VEP
perl vep written 17 months ago by John • 50
0
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0
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372
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0
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VCF2MAF does not recognize option --cache-version
software error cache vep vcf2maf written 10 months ago by kjnousia • 0
0
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0
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472
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0
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Difference between Cosmic Annotation from VEP and directly from COSMIC VCF.
annotation vep written 10 months ago by always_learning • 780
1
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1
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698
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1
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Plugin 'dbNSFP' of VEP went wrong
annotate software error vep dbnsfp written 11 months ago by ZoeChing • 0
4
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2
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981
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2
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Multiple VCF files and VEP
software error ensembl sequence vep snp written 2.2 years ago by dav • 0 • updated 12 months ago by Biostar ♦♦ 20
4
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1
answer
449
views
1
answer
Question about the consequence types from VEP
snps annotation consequence types vep written 13 months ago by vasilislenis • 70 • updated 13 months ago by Denise - Open Targets • 3.9k
0
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1
answer
350
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1
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Protein Sequence identifier to use after annotating variants (Swissprot or Uniparc) ?
ensembl vep uniprot written 13 months ago by aditi.qamra • 210 • updated 13 months ago by Elisabeth Gasteiger • 1.2k
2
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1
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495
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1
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VEP vs webserver Polyphen scores
polyphen annotation vep missense written 13 months ago by regrant • 10 • updated 13 months ago by Emily_Ensembl ♦ 12k
0
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0
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440
views
0
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Ensembl VEP cannot parse HGVS notation.
hgvs ensemble vep ref_seq parsing written 14 months ago by gmora • 10 • updated 14 months ago by Biostar ♦♦ 20
1
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0
answers
476
views
0
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Help needed understanding VEP: Allele - the variant allele used to calculate the consequence
next-gen vep snp written 15 months ago by velan • 0
3
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1
answer
391
views
1
answer
--maf_exac flag not found in VEP77
vep exac variant effect predictor written 17 months ago by arronslacey • 220 • updated 17 months ago by Emily_Ensembl ♦ 12k
6
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3
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597
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3
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Protein coding transcripts with vep
annotation vep variants written 17 months ago by onemoreuser • 0 • updated 17 months ago by Emily_Ensembl ♦ 12k
7
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2
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897
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2
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Wrong predict consequence in variants using VEP Ensembl
software error ensembl vep snp written 18 months ago by theodorobiotec • 10 • updated 18 months ago by Christian • 2.5k
0
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0
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710
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0
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VEP Variant Effect Predictor issue with RefSeq and Gene symbol
vep refseq written 23 months ago by manon.sourdeix • 0 • updated 21 months ago by Biostar ♦♦ 20
4
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1
answer
765
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1
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Can I run VEP on a VCF twice?
vcf vep written 22 months ago by karl.stamm ♦ 3.2k • updated 22 months ago by bruce.moran • 240
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