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<prev • 157 results • page 1 of 6 • next >
0
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dbNSFP VEP plugin and tabix query give different results
tabix vep dbnsfp written 2 days ago by heikobrennenstuhl • 0
2
votes
1
answer
116
views
1
answer
Understanding Variant Effect Predictor results
ensembl vep variant effect predictor written 6 days ago by caro-ca • 20
2
votes
1
answer
102
views
1
answer
Does VEP use alternative splicing in their calculations?
ensembl vep variant effect predictor written 14 days ago by caro-ca • 20 • updated 14 days ago by Emily_Ensembl ♦ 21k
24
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1
answer
3.0k
views
8 follow
1
answer
how to generate CNV plot from VEP results
cnv plot vep copy number alteration written 2.3 years ago by nazaninhoseinkhan • 410 • updated 27 days ago by _r_am ♦ 32k
3
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1
answer
154
views
1
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VEP coordinates do not result to same sequence as ref sequence in gsvar file
pyensembl grch37 vep deletion written 6 weeks ago by Damianos P. Melidis • 30
0
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1
answer
141
views
1
answer
Extract samples with alternative genotype from a multi-sample VCF
vcf bcftools vep written 8 weeks ago by tacrolimus • 80 • updated 8 weeks ago by abascalfederico • 1.1k
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0
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136
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VEP (SV annotation): how to choose the best overlapping reference SVs?
sv structural variants vep written 10 weeks ago by c.c.a. • 0
0
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1
answer
126
views
1
answer
VEP repeated region flag
vep variant human repeated-region written 10 weeks ago by cocchi.e89 • 120 • updated 10 weeks ago by Emily_Ensembl ♦ 21k
1
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1
answer
183
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1
answer
filter_vep not filtering according to my --filter criteria
filter_vep vep written 11 weeks ago by jan • 140 • updated 11 weeks ago by Ben_Ensembl • 1.6k
8
votes
1
answer
327
views
1
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What is the VEP Impact column?
consequence sequencing vep variant ensembl written 3 months ago by nub6 • 20 • updated 3 months ago by werewxcvv • 0
4
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1
answer
161
views
1
answer
How to determine significance of a variant?
next-gen vep written 3 months ago by nub6 • 20 • updated 3 months ago by Hamid Ghaedi • 1.2k
0
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0
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294
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0
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VEP - gnomAD v3 (hg38) annotation AF
vep hg38 gnomad annotation written 4 months ago by cocchi.e89 • 120 • updated 3 months ago by Biostar ♦♦ 20
5
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1
answer
286
views
1
answer
Finding unique variants by sample ID in a multisample vcf
vcf bcftools vep snp written 4 months ago by tacrolimus • 80 • updated 4 months ago by brunobsouzaa • 490
2
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0
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195
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0
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Ensembl FTP Mirror in USA? Slow Downloads
ensembl vep written 4 months ago by QVINTVS_FABIVS_MAXIMVS • 2.4k
2
votes
1
answer
231
views
1
answer
Use VEP (ensembl) with specific database e.g. dbSNP 144
ensembl vep snp mutation annotation written 4 months ago by romain.lannes • 80 • updated 4 months ago by Ben_Ensembl • 1.6k
0
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0
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207
views
0
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Counting allele counts/frequencies from a vcf file with both cases and controls
bcftools allele count vep written 5 months ago by tacrolimus • 80
0
votes
1
answer
436
views
1
answer
an efficient way to annotate mutations from vcf files using multiple annotation files
lovd ensembl clinvar vep cadd written 13 months ago by lait • 160 • updated 5 months ago by Biostar ♦♦ 20
4
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2
answers
339
views
2
answers
How can I use my own genome file on Variant Effect Predictor (VEP)
ensembl vep variant effect predictor written 5 months ago by caro-ca • 20 • updated 5 months ago by Ben_Ensembl • 1.6k
1
vote
1
answer
243
views
1
answer
Geneid between regions of chromosome
ensembl biomart vep geneid written 5 months ago by devarora • 300 • updated 5 months ago by Ben_Ensembl • 1.6k
0
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0
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226
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0
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No results from VEP. What am I doing wrong?
software error vep snp written 6 months ago by rsnewbie • 0 • updated 6 months ago by zx8754 ♦ 9.9k
3
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1
answer
178
views
1
answer
VEP output and protein change
vcf vep written 6 months ago by MAPK • 1.7k • updated 6 months ago by _r_am ♦ 32k
2
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1
answer
198
views
1
answer
How to combining VEP and VCF in one file
vcf vep written 6 months ago by MAPK • 1.7k • updated 6 months ago by Pierre Lindenbaum ♦ 133k
0
votes
2
answers
239
views
2
answers
VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 7 months ago by Chadi Saad • 80 • updated 6 months ago by Michal @Ensembl • 70
1
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0
answers
289
views
0
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Annotate hs37d5 genome calls using VEP
annotation 1kgenomes vep hs37d5 written 7 months ago by igor • 0
0
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0
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286
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0
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Why snpEff annotates same region with different "effects" and why some effects are given in combination? What is the criteria to filter this annotation?
exome vcf snpeff vep variantannotation written 7 months ago by svp • 420
2
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1
answer
264
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5 follow
1
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VEP is returning MOTIF_NAME values not recognised by Ensembl
ensembl vep snp written 7 months ago by jeni • 30 • updated 7 months ago by Michal @Ensembl • 70
0
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0
answers
319
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0
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Error while running vcf2maf tool
variant-calling maf vep vcf2maf vcfs written 7 months ago by Jordan • 1.2k
1
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2
answers
320
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2
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Conversion of Vep.vcf to MAF format?
maf genome vep snp cancer written 8 months ago by Thind amarinder • 110
0
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1
answer
375
views
1
answer
VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 8 months ago by cocchi.e89 • 120 • updated 8 months ago by Ben_Ensembl • 1.6k
2
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1
answer
287
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1
answer
VEP 100 and GRCh37
fasta ensembl grch37 vep written 8 months ago by cocchi.e89 • 120 • updated 8 months ago by Ben_Ensembl • 1.6k
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