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<prev • 124 results • page 1 of 5 • next >
4
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answers
199
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News: Ensembl reduced functionality: 10th March-9th April 2020
ensembl news vep service blat written 6 weeks ago by Ben_Ensembl • 1.3k
3
votes
1
answer
68
views
1
answer
VEP order most severe to least
variant consequence wgs vep largevcf written 3 days ago by shwethacm • 210 • updated 3 days ago by Ben_Ensembl • 1.3k
2
votes
1
answer
79
views
1
answer
Alternative allele in VEP output
vcf wgs vep written 5 days ago by A • 3.7k • updated 5 days ago by Ben_Ensembl • 1.3k
0
votes
0
answers
133
views
0
answers
Faster filtering of vcfs using split-vep over filter_vep
split-vep vcf vep bcftools written 4 weeks ago by omid.alavijeh • 40
0
votes
0
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105
views
0
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DBD::SQLite::db prepare failed: no such table: phylocsf_summary
vep phylocsf loftee written 6 weeks ago by nikitavlassenko • 50
0
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0
answers
81
views
0
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Issues installing PhyloCSF for VEP: opam install ocamlbuild
ensembl vep phylocsf written 6 weeks ago by nikitavlassenko • 50 • updated 6 weeks ago by ATpoint ♦ 32k
0
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0
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109
views
0
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Debugging VEP issue: no debug output present
debugging vep written 6 weeks ago by nikitavlassenko • 50
3
votes
1
answer
143
views
1
answer
Running VEP without --cache
vep written 6 weeks ago by nikitavlassenko • 50 • updated 6 weeks ago by ATpoint ♦ 32k
5
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2
answers
257
views
2
answers
Issues installing new VEP: Bio::DB:HTS library not found
vep written 7 weeks ago by nikitavlassenko • 50
3
votes
2
answers
105
views
2
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VEP not returning gnomAD AF
vep gnomad written 6 weeks ago by michal.inbar • 0 • updated 6 weeks ago by Ben_Ensembl • 1.3k
0
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0
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140
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0
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Does GNOMAD use all LOFTEE LoF filters?
ensembl lof vep gnomad loftee written 8 weeks ago by brismiller • 20 • updated 8 weeks ago by RamRS ♦ 26k
5
votes
1
answer
159
views
1
answer
VEP GUI not returning LOFTEE output?
ensembl vep loftee written 8 weeks ago by brismiller • 20 • updated 8 weeks ago by Ben_Ensembl • 1.3k
5
votes
1
answer
125
views
1
answer
"gnomad_allele" field in new VEP
vep gnomad written 9 weeks ago by ori.inbar • 10 • updated 9 weeks ago by Emily_Ensembl ♦ 20k
0
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1
answer
164
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1
answer
Adding consequences field (INFO) when using --allow_non_variant in VEP
vcf annotation vep written 10 weeks ago by magnolia • 0 • updated 10 weeks ago by Emily_Ensembl ♦ 20k
1
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0
answers
261
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0
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LOFTEE doesnt actually annotate Loss-of-function variants
genome ensembl vep snp written 11 weeks ago by Qingyang Xiao • 130
4
votes
1
answer
125
views
1
answer
Ensembl REST API Optional Parameters
ensembl vep written 12 weeks ago by Noushin N • 580 • updated 12 weeks ago by Emily_Ensembl ♦ 20k
5
votes
1
answer
178
views
1
answer
How to get rsid during the variant annotation using VEP (offline mode)
ensembl vep annotation written 12 weeks ago by seta • 1.2k • updated 12 weeks ago by Emily_Ensembl ♦ 20k
0
votes
1
answer
149
views
1
answer
an efficient way to annotate mutations from vcf files using multiple annotation files
lovd ensembl clinvar vep cadd written 3 months ago by lait • 140 • updated 3 months ago by Kevin Blighe ♦ 56k
1
vote
1
answer
135
views
1
answer
The VEP output for the variants of whole genome sequencing
ensembl vep whole genome sequencing written 3 months ago by seta • 1.2k
6
votes
1
answer
394
views
1
answer
Working with VEP in anaconda
anaconda vep conda snp rna-seq written 4 months ago by luzglongoria • 40 • updated 4 months ago by Emily_Ensembl ♦ 20k
2
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0
answers
142
views
0
answers
Variants effect predict
annovar prediction vep mutation written 4 months ago by yehchan57 • 10
1
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0
answers
115
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0
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Where to get GERP_scores.final.sorted.txt.gz for VEP analysis
vep hail gerp written 4 months ago by nikitavlassenko • 50 • updated 4 months ago by genomax ♦ 80k
0
votes
0
answers
187
views
0
answers
Filtering large VCFs by allele freqency using bcftools split-vep function
split-vep bcftools vep written 4 months ago by omid.alavijeh • 40
0
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2
answers
144
views
2
answers
VEP specific celltype defining regulatory variants
ensembl celltype vep regulatory written 5 months ago by c.clarido • 50
2
votes
1
answer
295
views
1
answer
VEP: filter_vep, custom VCF annotation (kaviar)
kaviar filter_vep vep written 5 months ago by c.clarido • 50 • updated 5 months ago by Emily_Ensembl ♦ 20k
2
votes
1
answer
179
views
1
answer
Add sample number/name column to VEP result
vcf vep written 6 months ago by Abdul Rafay Khan • 1.1k • updated 6 months ago by Emily_Ensembl ♦ 20k
4
votes
1
answer
189
views
1
answer
Classify extracted variants
gene vep snp sequencing written 6 months ago by ola.helenamartins • 0 • updated 6 months ago by zx8754 ♦ 9.1k
1
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0
answers
307
views
0
answers
Intalling Ensembl VEP in windows 10
ensembl next-gen sequence vep written 7 months ago by nachochie77 • 0
1
vote
1
answer
177
views
1
answer
A small detail when use VEP
vep written 8 months ago by Laven9 • 0 • updated 8 months ago by WouterDeCoster ♦ 43k
0
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0
answers
312
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0
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ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
annotation vep gnomad ensembl written 8 months ago by c.clarido • 50
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