Showing: vepreset
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bcftools query missense_variant SNPs from gnomad VCF files
bcftools vep written 17 days ago by Shicheng Guo7.4k • updated 17 days ago by Emily_Ensembl17k
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1
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129
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1
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Conserv CSQ and output plugin
ensembl vep csq written 4 weeks ago by robertclerc0 • updated 4 weeks ago by Emily_Ensembl17k
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328
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Using VEP to get gnomAD frequencies
annotation frequency vep gnomad allele frequency written 7 weeks ago by brett.spurrier20 • updated 6 weeks ago by Emily_Ensembl17k
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120
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Annovar and VEP overlapp
annovar vep written 9 weeks ago by BAGeno110 • updated 9 weeks ago by Kevin Blighe37k
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1
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177
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1
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Vep loftool threshold
loftool vep written 10 weeks ago by BAGeno110 • updated 10 weeks ago by Emily_Ensembl17k
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332
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9
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226
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6 follow
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Assembly used in Variant Effect Predictor
ensembl vep snp written 11 weeks ago by Uday Rangaswamy100 • updated 11 weeks ago by Emily_Ensembl17k
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256
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4
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271
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VEP output and stop gain mutation
ensemble vep emily_ensembl stop gain written 3 months ago by seta1.1k • updated 3 months ago by Ben_Ensembl930
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316
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Querying VEP using REST API
rest ensembl vep python R written 3 months ago by Arko10 • updated 3 months ago by Emily_Ensembl17k
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VEP- What is the best idea to start analyzing?
ensembl vep snp written 4 months ago by mostafarafiepour60 • updated 4 months ago by sadri.amirhossein0
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how to generate CNV plot from VEP results
cnv plot vep copy number alteration written 4 months ago by nazaninhoseinkhan360 • updated 4 months ago by Kevin Blighe37k
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Alternative to VEP.
vep snp written 4 months ago by joselu60 • updated 4 months ago by Emily_Ensembl17k
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954
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Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 2.7 years ago by gmora20 • updated 4 months ago by zx87546.5k
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 20 months ago by eurioste20 • updated 4 months ago by zx87546.5k
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284
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3
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189
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Why is HGVS notation not available for some variants?
hgvs ensembl vep written 6 months ago by jpuntomarcos20 • updated 6 months ago by Titus770
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VEP output has no gene names
alignment vep sequencing written 6 months ago by banerjeeshayantan80 • updated 6 months ago by RamRS20k
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Location of intronic SNPs from exons
vep exon introns position written 7 months ago by BAGeno110 • updated 7 months ago by Emily_Ensembl17k
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316
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1
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Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 2.1 years ago by R.Blues80 • updated 8 months ago by nicolas.dussex30
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1
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472
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Update RefSeq database with Ensembl VEP
ensembl vep refseq written 8 months ago by rbagnall1.3k • updated 8 months ago by Emily_Ensembl17k
3
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1
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268
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1
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VEP transcript CDS lenght
ensembl vep transcript written 9 months ago by cristinaluengoagullo0 • updated 9 months ago by genomax62k
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377
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1
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VEP annotation doubt with NM (NM_000000.1_dup19)
vep written 9 months ago by Cristian.perez50 • updated 9 months ago by Emily_Ensembl17k
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