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how to generate CNV plot from VEP results
cnv plot vep copy number alteration written 2.3 years ago by nazaninhoseinkhan410 • updated 27 days ago by _r_am32k
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Extract samples with alternative genotype from a multi-sample VCF
vcf bcftools vep written 8 weeks ago by tacrolimus80 • updated 8 weeks ago by abascalfederico1.1k
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VEP repeated region flag
vep variant human repeated-region written 10 weeks ago by cocchi.e89120 • updated 10 weeks ago by Emily_Ensembl21k
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filter_vep not filtering according to my --filter criteria
filter_vep vep written 11 weeks ago by jan140 • updated 11 weeks ago by Ben_Ensembl1.6k
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What is the VEP Impact column?
consequence sequencing vep variant ensembl written 3 months ago by nub620 • updated 3 months ago by werewxcvv0
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How to determine significance of a variant?
next-gen vep written 3 months ago by nub620 • updated 3 months ago by Hamid Ghaedi1.2k
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VEP - gnomAD v3 (hg38) annotation AF
vep hg38 gnomad annotation written 4 months ago by cocchi.e89120 • updated 3 months ago by Biostar ♦♦ 20
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Finding unique variants by sample ID in a multisample vcf
vcf bcftools vep snp written 4 months ago by tacrolimus80 • updated 4 months ago by brunobsouzaa490
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Use VEP (ensembl) with specific database e.g. dbSNP 144
ensembl vep snp mutation annotation written 4 months ago by romain.lannes80 • updated 4 months ago by Ben_Ensembl1.6k
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Geneid between regions of chromosome
ensembl biomart vep geneid written 5 months ago by devarora300 • updated 5 months ago by Ben_Ensembl1.6k
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No results from VEP. What am I doing wrong?
software error vep snp written 6 months ago by rsnewbie0 • updated 6 months ago by zx87549.9k
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VEP output and protein change
vcf vep written 6 months ago by MAPK1.7k • updated 6 months ago by _r_am32k
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How to combining VEP and VCF in one file
vcf vep written 6 months ago by MAPK1.7k • updated 6 months ago by Pierre Lindenbaum133k
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VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 7 months ago by Chadi Saad80 • updated 6 months ago by Michal @Ensembl70
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VEP is returning MOTIF_NAME values not recognised by Ensembl
ensembl vep snp written 7 months ago by jeni30 • updated 7 months ago by Michal @Ensembl70
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VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 8 months ago by cocchi.e89120 • updated 8 months ago by Ben_Ensembl1.6k
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VEP 100 and GRCh37
fasta ensembl grch37 vep written 8 months ago by cocchi.e89120 • updated 8 months ago by Ben_Ensembl1.6k
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