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8
votes
2
answers
122
views
2
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Location of intronic SNPs from exons
vep exon introns position written 5 days ago by BAGeno • 80 • updated 4 days ago by Emily_Ensembl ♦ 15k
2
votes
0
answers
118
views
0
answers
Large number of overlapped genes/transcripts reported by VEP
vep rna-seq snp written 8 days ago by newbio17 • 0
1
vote
1
answer
810
views
5 follow
1
answer
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 18 months ago by R.Blues • 80 • updated 5 weeks ago by nicolas.dussex • 30
2
votes
1
answer
164
views
1
answer
Update RefSeq database with Ensembl VEP
ensembl vep refseq written 7 weeks ago by rbagnall • 1.2k • updated 7 weeks ago by Emily_Ensembl ♦ 15k
3
votes
1
answer
138
views
1
answer
VEP transcript CDS lenght
ensembl vep transcript written 11 weeks ago by cristinaluengoagullo • 0 • updated 11 weeks ago by genomax ♦ 52k
9
votes
1
answer
204
views
1
answer
VEP annotation doubt with NM (NM_000000.1_dup19)
vep written 11 weeks ago by Cristian.perez • 40 • updated 11 weeks ago by Emily_Ensembl ♦ 15k
5
votes
1
answer
201
views
1
answer
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling written 11 weeks ago by jsneaththompson • 50 • updated 11 weeks ago by Emily_Ensembl ♦ 15k
1
vote
0
answers
205
views
0
answers
ENSEMBL VEP Inconsistent Results
ensembl vep written 3 months ago by azmanr • 0
1
vote
1
answer
187
views
1
answer
Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF?
human genome annotation wannovar vep vcf written 4 months ago by mathisdead • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 110k
5
votes
2
answers
312
views
2
answers
VEP tools output
ensembl vep output written 4 months ago by Nandini • 640 • updated 4 months ago by Ben_Ensembl • 600
2
votes
1
answer
414
views
1
answer
VEP ENSEMBL unexpected output when considering vcf insertions.
software error ensembl vep snp variants written 7 months ago by cedric.bogaert • 0 • updated 7 months ago by Emily_Ensembl ♦ 15k
4
votes
1
answer
753
views
1
answer
Exac and gnomad MAF value in VCF
vcf annovar vep written 9 months ago by Sharon • 340 • updated 9 months ago by Pierre Lindenbaum ♦ 110k
8
votes
3
answers
993
views
3
answers
Protein coding transcripts with vep
annotation vep variants written 2.4 years ago by onemoreuser • 10 • updated 9 months ago by Biostar ♦♦ 20
4
votes
1
answer
387
views
1
answer
SNP annotation with TFBS and histone marks
annotation tfbs histonemarks vep snp written 10 months ago by LNA • 30 • updated 10 months ago by Emily_Ensembl ♦ 15k
6
votes
1
answer
855
views
8 follow
1
answer
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes ensemble vep vcf2maf written 13 months ago by eurioste • 20 • updated 10 months ago by Cyriac Kandoth ♦ 5.0k
2
votes
1
answer
392
views
1
answer
SNP annotated outside gene location (Variant Effect Predictor)
ensembl vep snp variant effect predictor written 10 months ago by serpalma.v • 10 • updated 10 months ago by Denise - Open Targets • 4.5k
4
votes
1
answer
391
views
1
answer
Ensembl VEP 89 Output Format
ensembl vep written 11 months ago by bruce.moran • 410 • updated 11 months ago by Emily_Ensembl ♦ 15k
0
votes
2
answers
681
views
5 follow
2
answers
VEP and Annovar Annotation
annovar vep written 12 months ago by BAGeno • 80
4
votes
2
answers
691
views
2
answers
How to filter mutant allele frequency in Variant Effect Predictor (VEP)?
perl vcf vep ensembl written 13 months ago by kin182 • 0 • updated 13 months ago by EnsemblWill • 560
1
vote
0
answers
353
views
0
answers
Transcript IDs from VEP Annotation
gene transcript id next-gen vep sequencing written 13 months ago by seq_ngs • 0
3
votes
0
answers
434
views
0
answers
Forum: Survey for VEP users
ensembl survey variation vep forum written 14 months ago by Emily_Ensembl ♦ 15k
2
votes
2
answers
659
views
2
answers
How can I make VEP recognize header lines in my VCF?
vcf annotation vep written 14 months ago by Chris Miller ♦ 20k
2
votes
2
answers
700
views
2
answers
LD calculation using LD plugin for VEP
linkage disequilibrium vep ld written 15 months ago by eXpander • 90 • updated 15 months ago by Ben_Ensembl • 600
2
votes
0
answers
548
views
0
answers
Job: 2x Ensembl Jobs, EMBL-EBI, near Cambridge
genome chip-seq job bioinformatics ensembl vep written 16 months ago by Ensembl Helen • 60
3
votes
2
answers
1.8k
views
2
answers
VEP failed to parse TBX_GENERIC error
ensembl vep snp variant effect predictor written 2.8 years ago by bruce.moran • 410 • updated 19 months ago by Yunling • 0
0
votes
1
answer
1.1k
views
1
answer
Using VEP: Variant Effect Predictor, how do I get the 1000G global Allele Frequency of my alternate alleles specifically?
annovar vep variant effect predictor written 21 months ago by anp375 • 140 • updated 19 months ago by EnsemblWill • 560
1
vote
1
answer
725
views
1
answer
How do I get GO term annotations using VEP?
gene ensembl vep go ontology written 21 months ago by anp375 • 140 • updated 19 months ago by Ben_Ensembl • 600
3
votes
1
answer
686
views
1
answer
How to select predefine transcript when annotate VCF
vcf annotation snpeff vep written 20 months ago by Paul • 1.1k
1
vote
1
answer
1.0k
views
1
answer
Issues with variant effect predictor installation
perl ubuntu vep variant effect predictor written 20 months ago by cookersjs • 10
3
votes
0
answers
658
views
0
answers
Human ancestor for hg38
human_ancestor vep lof hg38 loftee written 21 months ago by matthias.desmet • 30
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