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How to compare DGE between different groups and create a volcano plot in R based on a GEO2R dataset?
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Recent Replies
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C: How to count frequency of kmers for different values of k from fasta file by
GenoMax ♦ 95k
No I did not make any changes. In the `sweep=` option use the order `start,stop,step` (in my exam...
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C: How to count frequency of kmers for different values of k from fasta file by
Ashi • 10
Unfortunately I am having the same error. Did you do any modifications to the calcmem.sh as it is...
-
C: How to count frequency of kmers for different values of k from fasta file by
GenoMax ♦ 95k
Just tried with E. coli genome. $ kmercountmulti.sh in=GCF_000005845.2_ASM584v2_genomic.fna ...
-
C: How to count frequency of kmers for different values of k from fasta file by
Ashi • 10
@Genomax I know this is not the proper post to ask this so I can delete it if needed but I am hav...
-
A: change name of scaffold to chromosome in .bam file by
seidel ♦ 7.2k
Giving the -c option to samtools reheader seems to work: samtools reheader -c 'sed -e "s/SN:...
-
C: How to count frequency of kmers for different values of k from fasta file by
GenoMax ♦ 95k
Yes. There is no installation needed. Just download the software and unzip the file. You are read...
-
C: How to count frequency of kmers for different values of k from fasta file by
Ashi • 10
@ATpoint Thank you for these. I had seen these. For some reason I am failing to install Jellyfish...
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C: How to count frequency of kmers for different values of k from fasta file by
Ashi • 10
@GenoMax Is this from BBmaptool? Do I need to install BBmap for this?
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C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju by
Gordon Smyth • 2.1k
The default settings for filterByExpr are specifically designed to keep as many genes in the anal...
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C: Extracting cells only from one condition (Seurat) by
Rosana.babu • 0
Try: seurat.subset <- subset(x = epithelial, subset = (stim == "Healthy" & stim == "Others...
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C: How to interpret a single cell RNA-seq experiment with 10 times less cells but c by
rpolicastro ♦ 3.2k
Assuming Cell Ranger worked correctly, it likely means few cells were actually captured by the Ch...
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> I want to compare the results of both aligners. In terms of what (accuracy/reproducibility)...
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