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How to compare DGE between different groups and create a volcano plot in R based on a GEO2R dataset?
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Recent Replies
-
C: Chia-pipe cannot find the module pigz by
genomax ♦ 89k
I took a look at the [config file they mention][1]. I think the module commands are for Jackson L...
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C: Chia-pipe cannot find the module pigz by
genomax ♦ 89k
Is that the actual executable? Does it have execute permissions?
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C: Chia-pipe cannot find the module pigz by
bioinfo89 • 40
Right ok. There are no sub dir under /scratch/krc190002/WGS_tools/ChIA-PIPE/samtools
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C: Chia-pipe cannot find the module pigz by
genomax ♦ 89k
Even if you set `$PATH` to point to your local directories it looks like the system installed pro...
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C: Chia-pipe cannot find the module pigz by
bioinfo89 • 40
echo $PATH /opt/ohpc/pub/mpi/openmpi3-gnu8/3.1.4/bin:/opt/ohpc/pub/compiler/gcc/8.3.0/bi...
-
C: Error running cutadapt in multithread mode by
ATpoint ♦ 38k
https://github.com/marcelm/cutadapt/issues/469 and https://github.com/marcelm/cutadapt/blob/mast...
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C: Chia-pipe cannot find the module pigz by
genomax ♦ 89k
Can you check the contents of `echo $PATH` and verify that all program directories appear there? ...
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C: Chia-pipe cannot find the module pigz by
bioinfo89 • 40
Yes, I did set the $PATH to the location of the programs. I mean that the modules are present i...
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C: Looking for raw, unprocessed RNA-seq datasets by
Dunois • 0
Oh wow, didn't know ENA had that. That's just amazing! Thank you!
-
A: Bcftools filter error by
BAGeno • 170
I am using bcftools 1.9. Do I need to install latest version?
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C: Bcftools filter error by
Pierre Lindenbaum ♦ 130k
see https://www.biostars.org/u/3616/ 's answer. Check your version of bcftools.
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A: Plotting large file size of bedtools genomecov output by
Pierre Lindenbaum ♦ 130k
use `bedtools merge `with option `-o` and `-c` to aggregate/reduce the size of the bed file. ht...
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