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Recent Votes
- A: how to analyze synteny between 4 genomes. please suggest suitable tool
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- A: Gallery: Computational tools for DNA methylation
- C: how to analyze synteny between 4 genomes. please suggest suitable tool
- how to analyze synteny between 4 genomes. please suggest suitable tool
- C: Is it practical to trap miRNA using PCR?
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Recent Replies
-
C: Merge multiple overlapping consensus sequences by
genomax ♦ 49k
Do a multiple sequence alignment (MSA) with all 10 and then export a consensus. Most MSA programs...
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A: how to analyze synteny between 4 genomes. please suggest suitable tool by
Kevin Blighe ♦ 21k
You may find utility in these: - Synteny Portal: a web-based application portal for synteny...
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C: Why different tSNE plot with Seurat and Monocle if they'r using the same R packa by
jgarces • 0
Thanks both, guys! Nothing simpler that set.seed()...
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C: The errors reported when running snakemake file with log function by
genomax ♦ 49k
Going to high-jack this thread for some time. @Medhat you are now a moderator see: https://www.bi...
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A: Gallery: Computational tools for DNA methylation by
Antonio R. Franco • 3.7k
[cgmaptools][1], a collection of programs to handle methylation data [1]: https://cgmaptools....
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C: Does FDR value change based Fold change cutoff? by
genomax ♦ 49k
Going to high-jack this thread for some time. @b.nota and @cpad both of you are now moderators. P...
-
C: how to find metabolites by
ivanarg2 • 20
You can then run regular gene set enrichment analysis, as below: fgsea(metabolites.gs, ranks...
-
A: RPKM to TPM conversion? by
brieannsobieski • 0
hi! Thank you, I just want to know if there is a way to validate these conversion equations / hav...
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C: Does FDR value change based Fold change cutoff? by
cpad0112 ♦ 6.3k
@OP: I think your question is answered here: https://support.bioconductor.org/p/110243/
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C: Inviting Biostars moderators to join Biostars slack channel by
genomax ♦ 49k
Welcome new mods: https://www.biostars.org/u/9571/ , https://www.biostars.org/u/21540/ and https...
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C: What is the normal N50 range when assembly the virus genome. by
h.mon ♦ 15k
Don't use `literal=`, use the virus genome as reference, with `ref=virus.fa`.
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A: RPKM to TPM conversion? by
Kevin Blighe ♦ 21k
Also, Harold Pimmental's blog posting: What the FPKM? A review of RNA-Seq expression units So...
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