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my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
wes written 15 days ago by jonessara770 • 120 • updated 15 days ago by Pierre Lindenbaum ♦ 112k
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181
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differences in covered regions in exome and whole genome sequencing
genome-sequencing wgs exome-sequencing wes written 9 weeks ago by miaowzai • 70 • updated 23 days ago by Biostar ♦♦ 20
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1
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101
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1
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Database of Mutations and the associated drugs
ngs wes written 5 weeks ago by Ron • 810 • updated 5 weeks ago by Kevin Blighe ♦ 28k
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0
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97
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0
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CNV analysis from exome sequencing data
wes cnv written 7 weeks ago by mkamranazim • 0
1
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1
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110
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1
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Haplotype sharing of mutation carriers
haplotype ngs wes snp written 7 weeks ago by Lio04 • 0 • updated 7 weeks ago by Kevin Blighe ♦ 28k
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141
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interpretation of intronic variant detected by WES
wes written 8 weeks ago by jonessara770 • 120
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1
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119
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1
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How to remove Variants where the Ref and Alt in the reference genome are switched?
ngs wes refalt variantcalling written 9 weeks ago by O.ibra • 0 • updated 9 weeks ago by Pierre Lindenbaum ♦ 112k
2
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1
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394
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1
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Implementation of the COSMIC database for somatic variant annotation and filtering pipeline for WES cancer data
cosmic wes somatic variants variant annotation written 12 weeks ago by svlachavas • 480
2
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1
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195
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1
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How to take in consideration UMI in WES pipeline?
wes written 3 months ago by jonessara770 • 120 • updated 3 months ago by i.sudbery • 2.5k
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151
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Read simulators for Ion Torrent platform specific for WES
torrent simulation wes ion amliseq written 4 months ago by world_genesis • 0
6
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1
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250
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1
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IBD calculation indicates cryptic relatedness of 1 Individual with all others within a sequencing cohort
relatedness wes plink ibd written 4 months ago by maegsul • 110 • updated 4 months ago by chrchang523 ♦ 3.9k
4
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1
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348
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1
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sample mixing when demultiplexing
human samples ngs wes demultiplex bam written 6 months ago by lait • 120
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233
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low coverage & BAF plots have three peaks
b-allele frequency low coverage wes human samples written 6 months ago by lait • 120
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1
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233
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1
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CNVkit segmetrics error
wes cnv germline written 6 months ago by SPDouglas • 0 • updated 6 months ago by Eric T. • 2.3k
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1
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286
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1
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Create a custom exome .genome for IGV
exome wes igv sequencing written 6 months ago by jgarces • 0 • updated 6 months ago by h.mon ♦ 19k
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2
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714
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2
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 14 months ago by a01039012387 • 10 • updated 7 months ago by nilesh.gardi2688 • 0
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0
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178
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0
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High CG>CA and CG>TG errors from bait bias WES
wes bias written 7 months ago by maduh17 • 10
3
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366
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Trouble with best practices
bioinformatics ngs wes samtools gatk written 7 months ago by erarroji • 0
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1
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727
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1
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converting varscan2 output to sequenza
exome wes mutation snp written 13 months ago by a01039012387 • 10 • updated 7 months ago by nilesh.gardi2688 • 0
3
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2
answers
544
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2
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how to distinguish mosaicism out of germline de novo mutations
mosaicism allele frequency wes de novo mutations written 7 months ago by lait • 120 • updated 7 months ago by donfreed • 1.3k
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1
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263
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1
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 8 months ago by lait • 120 • updated 8 months ago by morovatunc • 380
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315
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Known Indels and BED sites
wes written 8 months ago by win • 790
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3
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677
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3
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Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq depth wes coverage exome sequencing written 11 months ago by bioinforesearchquestions • 160 • updated 8 months ago by Raony Guimarães • 850
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438
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Picard CollectHsMetrics malfunctioning
picard ngs wes collecthsmetrics written 9 months ago by erarroji • 0 • updated 9 months ago by Pierre Lindenbaum ♦ 112k
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2
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WES germline CNV caller for trio analysis
wes cnv written 10 months ago by Nelson • 0 • updated 9 months ago by andrew.j.skelton73 ♦ 5.3k
6
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1
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522
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5 follow
1
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Inconsistent Coverage on X chromosome between genders
wes coverage written 10 months ago by kuckunniwid • 20
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1
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511
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1
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Difference between SNParray genotype dataset and WES genotype dataset
rnaarray wes genotype gwas written 10 months ago by boymin2020 • 10 • updated 10 months ago by Kevin Blighe ♦ 28k
18
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1
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678
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1
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can someone read this result to me
gene next-gen ngs wes sequencing written 10 months ago by dr.spear • 0
4
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1
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429
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1
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Problems with exome coverage at HRNR gene
sequence wes alignment hybrid capture written 11 months ago by ognjen011 • 150 • updated 11 months ago by Kevin Blighe ♦ 28k
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3
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1.0k
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3
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Calculating coverage for WGS, WES and RNASeq
wgs sequence coverage wes rna-seq written 12 months ago by Joshi • 0 • updated 12 months ago by Philipp Bayer ♦ 5.6k
<prev • 84 results • page 1 of 3 • next >
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