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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 7 weeks ago by a01039012387 • 0 • updated 10 hours ago by Biostar ♦♦ 20
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3
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Calculating coverage for WGS, WES and RNASeq
wgs sequence coverage wes rna-seq written 7 days ago by hihi.joshi • 0 • updated 7 days ago by Philipp Bayer ♦ 4.6k
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Which tool is recommended for detecting CNVs in whole exome sequencing?
wes cnvs whole exome sequencing written 14 days ago by bioinforesearchquestions • 90
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detection of somatic mutations using RNA seq data for tumor samples paired with WES data for normal samples
wes rna-seq snp somatic mutations written 23 days ago by sara.younes • 0
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converting varscan2 output to sequenza
exome wes mutation snp written 27 days ago by a01039012387 • 0
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241
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WES samples failing ABSOLUTE
absolute wes ploidy purity written 4 weeks ago by mkaushal • 70 • updated 4 weeks ago by markus.riester • 210
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sample order of the freebayes vcf output
vcf wes freebayes written 6 weeks ago by tangming2005 • 2.1k
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Human and Mouse Benchmarking datasets for WGS, WES (variant callling) and RNASeq+differential analysis pipeline.
dnaseq wes rna-seq wgs written 5 weeks ago by unique379 • 50
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Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing written 7 weeks ago by jonessara770 • 30 • updated 7 weeks ago by Pierre Lindenbaum ♦ 98k
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WES or WGS analysis of cancer samples with no matched germline
wgs wes snv cnv written 9 weeks ago by Bogdan • 260 • updated 9 weeks ago by markus.riester • 210
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1
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203
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CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 10 weeks ago by plink_9857 • 40 • updated 9 weeks ago by Eric T. • 1.8k
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Job: EARLY STAGE RESEARCHER at Ospedale San Raffaele, Laboratory of Human Genetics of Neurological Diseases, Neuroscience Division, Milan, Italy
next-gen pipeline neuropathic pain job sequencing wes written 12 weeks ago by silviasantoro17 • 20
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What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
sv wgs snp array wes cnv written 3 months ago by Irina Astrovskaya • 20
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 4 months ago by mar.ark.parr • 30 • updated 3 months ago by Chris Miller ♦ 18k
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Annovar - Mouse Exome Sequencing
annovar wes whole-exome sequencing mouse written 3 months ago by cbatist • 0
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Job: Bioinformatics Scientist I, Childrens Hospital of Philadelphia, Philadelphia, PA, USA
next-gen job hpc wes rna-seq wgs written 3 months ago by komal.rathi • 2.9k
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172
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Tumor Progress Study
wes written 3 months ago by haiying.kong • 170 • updated 3 months ago by Dan Gaston ♦ 6.8k
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Job: Senior Bioinformatician at Partners Personalized Medicine, Cambridge MA
python job wes machinelearning rna-seq wgs written 4 months ago by hns • 130
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Intersection of a BED genes with multiple VCFs: report only if at least N intersection.
bedtools vcf wes bed intersection written 4 months ago by badredda • 10 • updated 4 months ago by Alex Reynolds ♦ 20k
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The meaning of VAF and LOH in sciclone
sciclone wes vaf loh written 4 months ago by shiyang93 • 10 • updated 4 months ago by Chris Miller ♦ 18k
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How to find number of genes in Agilent Protocol
wes written 4 months ago by haiying.kong • 170 • updated 4 months ago by genomax ♦ 33k
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varScan2: can I use pooled normal when doing CNV calling?
cna wes varscan2 cnv written 5 months ago by pel67 • 0
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247
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1
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Where can I find a sample analysis pipeline for DNA?
wgs next-gen wes snp sequencing written 5 months ago by andrea • 0 • updated 5 months ago by geocarvalho • 20
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How to exclude noisy CNV from study?
dnacopy varscan copy number variation cnv wes written 6 months ago by rmateos.1 • 10 • updated 5 months ago by vchris_ngs • 4.0k
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Threshold for WES low coverage proportion
wes written 6 months ago by haiying.kong • 170
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301
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1
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analysis piplines for wes and wgs
wgs ngs wes pipeline assembly written 6 months ago by l.eit • 0 • updated 6 months ago by WouterDeCoster ♦ 21k
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WES reads mapping: RNASeq or DNASeq aligner?
alignment wes mapping written 6 months ago by user230613 • 240 • updated 6 months ago by cschu181 • 630
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NA values in q-end of chromosomes (segments.p)
dnacopy R wes cnv segment.p written 7 months ago by rmateos.1 • 10
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Full intronic deletions on a Whole-Exome Sequencing experiment
wes whole-exome sequencing cnv deletion written 7 months ago by bdelolmo • 10 • updated 7 months ago by trausch • 730
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QC for Whole Exome Sequence Data
wes written 8 months ago by haiying.kong • 170
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