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<prev • 133 results • page 1 of 5 • next >
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Literature for VCF filtering
next-gen wes snp written 5 days ago by Martina • 20
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56
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VCF quality indicators
variant calling next-gen wes snp normal-tumor written 5 days ago by Martina • 20
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News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant calling tutorial wes wgs news software tools written 13 days ago by Basepair • 0 • updated 13 days ago by h.mon ♦ 29k
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71
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WES allelic imbalence
allelic imbalance ngs wes written 14 days ago by ertan.yilmaz • 0 • updated 14 days ago by prasundutta87 • 360
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Suggested pipeline to perform variant calling for cancer exome sequencing samples of PDX models
variant calling pdx wes liquid biopsy written 5 weeks ago by svlachavas • 640
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225
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1
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Estimate tumor purity for liquid cancer biopsy samples of whole exome sequencing data
variant calling liquid biopsy wes tumor purity written 9 weeks ago by svlachavas • 640 • updated 5 weeks ago by amjad • 80
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136
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BEDTools coverage is giving empty output when computing coverage of bam vs bed
exome bedtools wes coverage written 5 weeks ago by DrDoom • 10
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1
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127
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1
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which exome pipeline to use post PrecisionFDA challenges ?
ngs wes written 11 weeks ago by CrazyB • 210 • updated 10 weeks ago by Charles Warden ♦ 7.6k
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165
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ctDNA WES duplication rates from NovaSeq 6000 and HiSeq 4000
novaseq illumina wes sequencing written 10 weeks ago by graeme.thorn • 50
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Technical challenges inherent to WES processing - any recommended review sources?
next-gen wes sequencing written 11 weeks ago by asg • 0 • updated 11 weeks ago by Nicolas Rosewick ♦ 8.7k
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126
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Error in converting bed file to interval using Picard
agilent exome picard wes bedtointervallist written 12 weeks ago by Assa Yeroslaviz • 1.3k
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2
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188
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2
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Analyzing Whole exome Seq for mouse
exome mouse wes capture written 12 weeks ago by Assa Yeroslaviz • 1.3k
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159
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1
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Mapping whole exome sequencing
exome gatk wes bwa written 3 months ago by Assa Yeroslaviz • 1.3k • updated 3 months ago by WouterDeCoster ♦ 43k
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125
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Does MarkDuplicates remove duplicate sequence in library?
gatk wes sequencing written 3 months ago by Shixiang • 50
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117
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detecting LoH in non-cancer samples
loh next-gen wes written 3 months ago by clementine • 0 • updated 3 months ago by bernatgel • 2.5k
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111
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CONTRA for CNV: lack of output images from CONTRA
normal exome wes contra cnv written 3 months ago by ogcmail • 0
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127
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Normal sample variant calling method without PON ?
gatk wes mutect2 sequencing written 4 months ago by Igor Islanov • 0
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5 follow
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 2.6 years ago by a01039012387 • 10 • updated 4 months ago by firatuyulur • 300
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174
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Call fusion genes from WES data
wes gene fusion written 4 months ago by Paso • 10
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173
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Common variants discovery
gwas wes snp written 4 months ago by yehchan57 • 10
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328
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Methods for Doing Consensus Variant Calling between multiple callers
consensus wes calling variant dna written 6 months ago by djevanclark • 40
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156
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Compare results of test pipelines with the ones from GIAB
giab wes compare written 6 months ago by noff.polina • 0 • updated 6 months ago by finswimmer ♦ 13k
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270
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Using Varscan without a matched normal
varscan wes written 7 months ago by sugus • 40 • updated 7 months ago by Chris Miller ♦ 21k
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NA values in q-end of chromosomes (segments.p)
dnacopy R wes cnv segment.p written 3.1 years ago by rmateos.1 • 10 • updated 7 months ago by Biostar ♦♦ 20
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272
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Job: London LIDo PhD studentship
dna-array wes job rna-seq genomic biomarkers written 8 months ago by dxia • 0
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761
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1
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TCGA TMB: What exome size to use?
wes written 12 months ago by ngs_engineer • 0 • updated 8 months ago by bastien.nguyen • 0
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VarScan warning and exit after Invalid format for pileup at line 1
software error variant calling wes written 10 months ago by n.tear • 10 • updated 8 months ago by Biostar ♦♦ 20
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converting varscan2 output to sequenza
exome wes mutation snp written 2.5 years ago by a01039012387 • 10 • updated 9 months ago by brunobsouzaa • 60
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501
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GATK4 VariantRecalibrator resource error
gatk4 ngs wes written 9 months ago by samreen.jasvi • 0
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EXCAVATOR shows 1 deletion which is not TRUE in IGV
exome excavator wes cnv igv written 9 months ago by lait • 140
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