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<prev • 87 results • page 1 of 3 • next >
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Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing written 15 months ago by jonessara770 • 130 • updated 11 days ago by rmh1995 • 0
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0
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83
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Qs about mutect2
gatk wes mutect2 written 24 days ago by walker • 10
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2
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105
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2
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Enrichment platforms for 1000GP exome data
data wes written 5 weeks ago by kuckunniwid • 20
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3
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173
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5 follow
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CNV calling from exome sequencing data with a low number of samples
exome wes copy-number variant cnv written 5 weeks ago by KumaraFM • 0 • updated 5 weeks ago by toralmanvar • 660
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1.2k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 18 months ago by mar.ark.parr • 30 • updated 6 weeks ago by aliz0611 • 0
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Whole exome sequencing data, rare variants and QQ-plots
qq-plot wes whole exome sequencing written 2.5 years ago by felejohs • 70 • updated 7 weeks ago by zx8754 ♦ 5.6k
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171
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my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
wes written 9 weeks ago by jonessara770 • 130 • updated 9 weeks ago by Pierre Lindenbaum ♦ 114k
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220
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differences in covered regions in exome and whole genome sequencing
genome-sequencing wgs exome-sequencing wes written 4 months ago by miaowzai • 90 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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141
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1
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Database of Mutations and the associated drugs
ngs wes written 3 months ago by Ron • 820 • updated 3 months ago by Kevin Blighe ♦ 32k
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136
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CNV analysis from exome sequencing data
wes cnv written 3 months ago by mkamranazim • 0
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1
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155
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1
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Haplotype sharing of mutation carriers
haplotype ngs wes snp written 3 months ago by Lio04 • 0 • updated 3 months ago by Kevin Blighe ♦ 32k
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182
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interpretation of intronic variant detected by WES
wes written 3 months ago by jonessara770 • 130
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1
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150
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1
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How to remove Variants where the Ref and Alt in the reference genome are switched?
ngs wes refalt variantcalling written 3 months ago by O.ibra • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 114k
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1
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542
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1
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Implementation of the COSMIC database for somatic variant annotation and filtering pipeline for WES cancer data
cosmic wes somatic variants variant annotation written 4 months ago by svlachavas • 500
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1
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267
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1
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How to take in consideration UMI in WES pipeline?
wes written 5 months ago by jonessara770 • 130 • updated 5 months ago by i.sudbery • 2.7k
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217
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0
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Read simulators for Ion Torrent platform specific for WES
torrent simulation wes ion amliseq written 5 months ago by world_genesis • 0
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1
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324
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1
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IBD calculation indicates cryptic relatedness of 1 Individual with all others within a sequencing cohort
relatedness wes plink ibd written 6 months ago by maegsul • 110 • updated 6 months ago by chrchang523 ♦ 4.2k
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1
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398
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1
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sample mixing when demultiplexing
human samples ngs wes demultiplex bam written 8 months ago by lait • 120
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0
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272
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low coverage & BAF plots have three peaks
b-allele frequency low coverage wes human samples written 8 months ago by lait • 120
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1
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271
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1
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CNVkit segmetrics error
wes cnv germline written 8 months ago by SPDouglas • 0 • updated 8 months ago by Eric T. • 2.3k
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1
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345
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1
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Create a custom exome .genome for IGV
exome wes igv sequencing written 8 months ago by jgarces • 0 • updated 8 months ago by h.mon ♦ 21k
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2
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790
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 15 months ago by a01039012387 • 10 • updated 8 months ago by nilesh.gardi2688 • 0
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217
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High CG>CA and CG>TG errors from bait bias WES
wes bias written 8 months ago by maduh17 • 10
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402
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Trouble with best practices
bioinformatics ngs wes samtools gatk written 9 months ago by erarroji • 0
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1
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799
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1
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converting varscan2 output to sequenza
exome wes mutation snp written 14 months ago by a01039012387 • 10 • updated 9 months ago by nilesh.gardi2688 • 0
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2
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674
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2
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how to distinguish mosaicism out of germline de novo mutations
mosaicism allele frequency wes de novo mutations written 9 months ago by lait • 120 • updated 9 months ago by donfreed • 1.3k
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1
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307
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 9 months ago by lait • 120 • updated 9 months ago by morovatunc • 380
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390
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Known Indels and BED sites
wes written 10 months ago by win • 790
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3
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754
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3
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Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq depth wes coverage exome sequencing written 12 months ago by bioinforesearchquestions • 180 • updated 10 months ago by Raony Guimarães • 860
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513
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Picard CollectHsMetrics malfunctioning
picard ngs wes collecthsmetrics written 11 months ago by erarroji • 0 • updated 11 months ago by Pierre Lindenbaum ♦ 114k
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