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<prev • 113 results • page 1 of 4 • next >
2
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1
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61
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1
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Using Varscan without a matched normal
varscan wes written 3 days ago by sugus • 30 • updated 3 days ago by Chris Miller ♦ 21k
0
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0
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617
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0
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NA values in q-end of chromosomes (segments.p)
dnacopy R wes cnv segment.p written 2.5 years ago by rmateos.1 • 10 • updated 5 days ago by Biostar ♦♦ 20
0
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0
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171
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0
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Job: London LIDo PhD studentship
dna-array wes job rna-seq genomic biomarkers written 5 weeks ago by dxia • 0
0
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1
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390
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1
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TCGA TMB: What exome size to use?
wes written 4 months ago by ngs_engineer • 0 • updated 5 weeks ago by bastien.nguyen • 0
3
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0
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219
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0
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VarScan warning and exit after Invalid format for pileup at line 1
software error variant calling wes written 12 weeks ago by n.tear • 0 • updated 6 weeks ago by Biostar ♦♦ 20
0
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1
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1.1k
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1
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converting varscan2 output to sequenza
exome wes mutation snp written 23 months ago by a01039012387 • 10 • updated 7 weeks ago by brunobsouzaa • 10
0
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0
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131
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0
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GATK4 VariantRecalibrator resource error
gatk4 ngs wes written 9 weeks ago by samreen.jasvi • 0
2
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0
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161
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0
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EXCAVATOR shows 1 deletion which is not TRUE in IGV
exome excavator wes cnv igv written 9 weeks ago by lait • 130
2
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1
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184
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1
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bionano hybrid scaffold
optical mapping wes bionano illumina written 11 weeks ago by lait • 130 • updated 11 weeks ago by WouterDeCoster ♦ 40k
2
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0
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210
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0
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Mutect2 "somatic" variants with resistant tissue culture lines
gatk wes mutect2 variants genotyping written 3 months ago by shawn.w.foley • 780 • updated 11 weeks ago by Biostar ♦♦ 20
2
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2
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327
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2
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CNVkit for somatic copy number detection
exome cnvkit wes cnv written 3 months ago by stephaniem • 0
0
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0
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88
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0
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Tools to access variation of ploidy at certain genomic loci using WES
endomitosis wes ploidy written 12 weeks ago by Rahul Sharma • 600
0
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1
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166
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1
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Can CVNkit call CNV correctly at HLA genes region?
cnvkit wes hla written 12 weeks ago by MatthewP • 180 • updated 12 weeks ago by linouhao • 0
3
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1
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175
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1
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Post-filtering WES for mutation calling
wxs wes mutect2 written 3 months ago by graeme.thorn • 40
0
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0
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136
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0
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How can I check my title of reads added by BWA mem -R?
wes bwa written 3 months ago by Laven9 • 0
3
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2
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602
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6 follow
2
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Downstream analysis of VCF files obtained from VarScan2
vcf wes snpeff varscan2 somatic variations written 7 months ago by Raheleh • 70 • updated 3 months ago by bari.ballew • 110
8
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2
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276
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2
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tool to detect large deletions
deletions wes igv written 3 months ago by lait • 130 • updated 3 months ago by bari.ballew • 110
0
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1
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1.4k
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1
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Annovar - Mouse Exome Sequencing
annovar wes whole-exome sequencing mouse written 2.1 years ago by cbatist • 0 • updated 3 months ago by Kevin Blighe ♦ 45k
6
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1
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1.6k
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1
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 2.7 years ago by Jerome Lin • 20 • updated 3 months ago by Biostar ♦♦ 20
7
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1
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183
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7 follow
1
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Can you use germline variation calling on a normal embryonic stem cell line?
germline variation gatk wes snp embryonic cell written 3 months ago by maria2019 • 30 • updated 3 months ago by Emily_Ensembl ♦ 18k
0
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1
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216
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1
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why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
bwamem bowtie2 wes qualimap written 3 months ago by maria2019 • 30 • updated 3 months ago by h.mon ♦ 26k
0
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1
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139
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1
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Should I use the same reference indexing command of bwa for WGS and WES analysis?
indexing wes bwa mem wgs written 3 months ago by maria2019 • 30 • updated 3 months ago by finswimmer ♦ 11k
0
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0
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163
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How many SNPs I should expect to see in a normal human embryonic stem cell (hESC) with WES analysis?
wes samtools snp hesc written 3 months ago by maria2019 • 30
1
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1
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932
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1
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What is the right illumina universal adapter sequence for trimming paired-end reads?
trimadaptor wes fastqc written 3 months ago by maria2019 • 30 • updated 3 months ago by lakhujanivijay ♦ 4.2k
3
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1
answer
205
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1
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Does strange fastQC GC content report cause a problem for WES analysis?
gc content wes fastqc written 3 months ago by maria2019 • 30 • updated 3 months ago by JC ♦ 8.0k
2
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1
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170
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1
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Should I specify exome region to do the QC with qualimap2 for WES analysis?
wes qc qualimap2 written 3 months ago by maria2019 • 30 • updated 3 months ago by h.mon ♦ 26k
3
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1
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357
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1
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How can I split WES FASTQ file into sub-files for each chromosome ?
fastq wes split chromosome written 4 months ago by Laven9 • 0
1
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0
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173
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0
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putative mosaic mutations
mosaic de novo wes sequencing written 4 months ago by lait • 130
1
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0
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237
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0
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Incorrect number of AD fields (2) at 1:878906 cannot merge
vcf wes bcftools written 4 months ago by jaybee • 10
1
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1.3k
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0
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What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
sv wgs snp array wes cnv written 2.1 years ago by Irina Astrovskaya • 20 • updated 7 months ago by h.mon ♦ 26k
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