Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: wes • reset
or   Classic search
<prev • 89 results • page 1 of 3 • next >
1
vote
0
answers
973
views
0
answers
What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
sv wgs snp array wes cnv written 19 months ago by Irina Astrovskaya • 20 • updated 29 days ago by h.mon ♦ 22k
3
votes
1
answer
190
views
1
answer
Appropriate bed files from library capture kit for computing on target coverage of WES bam files with Picard and CollectHsMetrics
picard on target coverage ngs wes bam files written 5 weeks ago by svlachavas • 530 • updated 4 weeks ago by finswimmer ♦ 8.9k
0
votes
0
answers
179
views
0
answers
Downstream analysis of VCF files obtained from VarScan2
vcf wes snpeff varscan2 somatic variations written 7 weeks ago by R.A. • 50
1
vote
1
answer
701
views
1
answer
Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing written 17 months ago by jonessara770 • 130 • updated 10 weeks ago by rmh1995 • 0
0
votes
0
answers
140
views
0
answers
Qs about mutect2
gatk wes mutect2 written 12 weeks ago by walker • 10
0
votes
2
answers
144
views
2
answers
Enrichment platforms for 1000GP exome data
data wes written 3 months ago by kuckunniwid • 20
3
votes
3
answers
345
views
5 follow
3
answers
CNV calling from exome sequencing data with a low number of samples
exome wes copy-number variant cnv written 3 months ago by KumaraFM • 0 • updated 3 months ago by toralmanvar • 730
1
vote
2
answers
1.3k
views
2
answers
SciClone on WES data
dnacopy varscan clonality wes sciclone written 20 months ago by mar.ark.parr • 30 • updated 3 months ago by aliz0611 • 0
15
votes
3
answers
1.5k
views
3
answers
Whole exome sequencing data, rare variants and QQ-plots
qq-plot wes whole exome sequencing written 2.6 years ago by felejohs • 70 • updated 3 months ago by zx8754 ♦ 6.2k
1
vote
1
answer
213
views
1
answer
my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
wes written 4 months ago by jonessara770 • 130 • updated 4 months ago by Pierre Lindenbaum ♦ 116k
0
votes
0
answers
259
views
0
answers
differences in covered regions in exome and whole genome sequencing
genome-sequencing wgs exome-sequencing wes written 6 months ago by miaowzai • 110 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
191
views
1
answer
Database of Mutations and the associated drugs
ngs wes written 5 months ago by Ron • 840 • updated 5 months ago by Kevin Blighe ♦ 35k
0
votes
0
answers
230
views
0
answers
CNV analysis from exome sequencing data
wes cnv written 5 months ago by mkamranazim • 0
1
vote
1
answer
195
views
1
answer
Haplotype sharing of mutation carriers
haplotype ngs wes snp written 5 months ago by Lio04 • 0 • updated 5 months ago by Kevin Blighe ♦ 35k
1
vote
0
answers
225
views
0
answers
interpretation of intronic variant detected by WES
wes written 5 months ago by jonessara770 • 130
0
votes
1
answer
176
views
1
answer
How to remove Variants where the Ref and Alt in the reference genome are switched?
ngs wes refalt variantcalling written 6 months ago by O.ibra • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 116k
2
votes
1
answer
676
views
1
answer
Implementation of the COSMIC database for somatic variant annotation and filtering pipeline for WES cancer data
cosmic wes somatic variants variant annotation written 6 months ago by svlachavas • 530
2
votes
1
answer
341
views
1
answer
How to take in consideration UMI in WES pipeline?
wes written 7 months ago by jonessara770 • 130 • updated 7 months ago by i.sudbery ♦ 3.1k
0
votes
0
answers
284
views
0
answers
Read simulators for Ion Torrent platform specific for WES
torrent simulation wes ion amliseq written 7 months ago by world_genesis • 0
6
votes
1
answer
390
views
1
answer
IBD calculation indicates cryptic relatedness of 1 Individual with all others within a sequencing cohort
relatedness wes plink ibd written 8 months ago by maegsul • 110 • updated 8 months ago by chrchang523 ♦ 4.3k
4
votes
1
answer
473
views
1
answer
sample mixing when demultiplexing
human samples ngs wes demultiplex bam written 10 months ago by lait • 120
0
votes
0
answers
323
views
0
answers
low coverage & BAF plots have three peaks
b-allele frequency low coverage wes human samples written 10 months ago by lait • 120
0
votes
1
answer
322
views
1
answer
CNVkit segmetrics error
wes cnv germline written 10 months ago by SPDouglas • 0 • updated 10 months ago by Eric T. • 2.3k
0
votes
1
answer
394
views
1
answer
Create a custom exome .genome for IGV
exome wes igv sequencing written 10 months ago by jgarces • 0 • updated 10 months ago by h.mon ♦ 22k
1
vote
2
answers
885
views
2
answers
I need allele copy number information for running PyClone
wes whole-exome allele copy number written 17 months ago by a01039012387 • 10 • updated 11 months ago by nilesh.gardi2688 • 0
0
votes
0
answers
252
views
0
answers
High CG>CA and CG>TG errors from bait bias WES
wes bias written 11 months ago by maduh17 • 10
3
votes
0
answers
440
views
0
answers
Trouble with best practices
bioinformatics ngs wes samtools gatk written 11 months ago by erarroji • 0
0
votes
1
answer
869
views
1
answer
converting varscan2 output to sequenza
exome wes mutation snp written 17 months ago by a01039012387 • 10 • updated 11 months ago by nilesh.gardi2688 • 0
3
votes
2
answers
818
views
2
answers
how to distinguish mosaicism out of germline de novo mutations
mosaicism allele frequency wes de novo mutations written 11 months ago by lait • 120 • updated 11 months ago by donfreed • 1.4k
0
votes
1
answer
343
views
1
answer
detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 11 months ago by lait • 120 • updated 11 months ago by morovatunc • 390
<prev • 89 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • Germany, 1 minute ago
  • Berlin, 1 minute ago
  • Belgium, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2052 users visited in the last hour