Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 153 results • page 1 of 6 • next >
0
votes
1
answer
47
views
1
answer
GATK Mutect2 Panel-Of-Normals generation
gatk panel-of-normal non-tumor wes mutect2 written 2 days ago by cocchi.e89 • 80 • updated 2 days ago by WouterDeCoster ♦ 44k
0
votes
0
answers
49
views
0
answers
VarAFT Analyze and Filtering Tool problem
varaft wes analyse tool written 12 days ago by qazwsx123 • 0
0
votes
0
answers
79
views
0
answers
CNV callers for WES data
R next-gen cnv wes written 22 days ago by patelk26 • 120
0
votes
0
answers
79
views
0
answers
ACMG assignment tools
wgs wes acmg written 23 days ago by Eugene A • 30
0
votes
0
answers
97
views
0
answers
How should I extract mutated genes from a VCF file?
exome gatk wes written 28 days ago by jrleary • 110
2
votes
1
answer
110
views
1
answer
How much RAM / how many CPUs should I allocate for Mutect2?
wes written 5 weeks ago by jrleary • 110 • updated 4 weeks ago by steve • 2.5k
0
votes
1
answer
92
views
1
answer
Questions regarding whole exome sequencing
wes sequencing written 5 weeks ago by nickhir • 10 • updated 5 weeks ago by Kevin Blighe ♦ 61k
2
votes
1
answer
114
views
1
answer
Picard CollectSequencingArtifactMetrics error
picard wes written 6 weeks ago by jrleary • 110
1
vote
0
answers
115
views
0
answers
mosdepth coverage so slow - fast way to get coverage of restricted regions WES
mosdepth exome wes coverage written 8 weeks ago by cocchi.e89 • 80 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
115
views
0
answers
Machine learning - NGS data
ngs wes ai machinelearning written 6 weeks ago by stanedav • 40
0
votes
0
answers
82
views
0
answers
LOH segment inferring from WES data for germline sample
loh wes written 7 weeks ago by J.F.Jiang • 820
2
votes
1
answer
124
views
1
answer
identify highly mutated regions in WES/WGS samples
wgs wes mutation hotspot written 8 weeks ago by cocchi.e89 • 80 • updated 7 weeks ago by igor ♦ 11k
0
votes
1
answer
179
views
1
answer
Suggested pipeline to perform variant calling for cancer exome sequencing samples of PDX models
variant calling pdx wes liquid biopsy written 5 months ago by svlachavas • 680 • updated 9 weeks ago by akshayb04 • 20
4
votes
1
answer
76
views
1
answer
Find covered regions in a set of BAM files
wes coverage written 11 weeks ago by German.M.Demidov • 1.6k
0
votes
0
answers
106
views
0
answers
Pisces and Octopus on WES
variant calling pisces wes octopus written 11 weeks ago by newbio17 • 110
3
votes
2
answers
144
views
2
answers
Different NGS runs for paired samples
exome ngs wes tumor-blood written 12 weeks ago by gab • 20 • updated 12 weeks ago by bruce.moran • 830
1
vote
1
answer
112
views
1
answer
Reference of Whole exome sequecing analysis
variant calling ngs wes mutation bwa written 3 months ago by Shahzad • 10 • updated 3 months ago by lakhujanivijay ♦ 5.0k
5
votes
1
answer
126
views
1
answer
Whole intron deletion?
sv ngs wes written 3 months ago by German.M.Demidov • 1.6k • updated 3 months ago by Pierre Lindenbaum ♦ 129k
0
votes
0
answers
119
views
0
answers
Retrieving multiple regions (from a list) in a bam file and outputing as a table
data frame wes snp written 3 months ago by dodausp • 140
5
votes
1
answer
136
views
1
answer
Clinics and Mobile Elements in WES data
wes mei written 3 months ago by German.M.Demidov • 1.6k • updated 3 months ago by rciskow • 30
1
vote
1
answer
387
views
1
answer
Somatic variant calling with/without matched normal sample (Mutect2)
variant calling gatk wes mutect2 written 4 months ago by newbio17 • 110 • updated 3 months ago by markus.riester • 490
0
votes
0
answers
91
views
0
answers
Literature for VCF filtering
next-gen wes snp written 4 months ago by Martina • 30
0
votes
0
answers
113
views
0
answers
VCF quality indicators
variant calling next-gen wes snp normal-tumor written 4 months ago by Martina • 30
0
votes
0
answers
140
views
0
answers
News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant calling tutorial wes wgs news software tools written 4 months ago by Basepair • 0 • updated 4 months ago by h.mon ♦ 30k
0
votes
1
answer
149
views
1
answer
WES allelic imbalence
allelic imbalance ngs wes written 4 months ago by SurdanBurasi • 0 • updated 4 months ago by prasundutta87 • 360
3
votes
1
answer
341
views
1
answer
Estimate tumor purity for liquid cancer biopsy samples of whole exome sequencing data
variant calling liquid biopsy wes tumor purity written 6 months ago by svlachavas • 680 • updated 5 months ago by amjad • 80
2
votes
1
answer
227
views
1
answer
BEDTools coverage is giving empty output when computing coverage of bam vs bed
exome bedtools wes coverage written 5 months ago by DrDoom • 10
0
votes
1
answer
172
views
1
answer
which exome pipeline to use post PrecisionFDA challenges ?
ngs wes written 6 months ago by CrazyB • 210 • updated 6 months ago by Charles Warden ♦ 7.8k
0
votes
0
answers
389
views
0
answers
ctDNA WES duplication rates from NovaSeq 6000 and HiSeq 4000
novaseq illumina wes sequencing written 6 months ago by graeme.thorn • 50
3
votes
1
answer
221
views
1
answer
Technical challenges inherent to WES processing - any recommended review sources?
next-gen wes sequencing written 7 months ago by asg • 0 • updated 7 months ago by Nicolas Rosewick ♦ 8.8k
<prev • 153 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • Austria, 1 minute ago
  • Pretoria, South Africa, 1 minute ago
  • France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
  • Russian Federation, 2 minutes ago
  • ETH Zurich, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 692 users visited in the last hour