Showing: wesreset
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detecting LoH in non-cancer samples
loh next-gen wes written 13 days ago by clementine0 • updated 12 days ago by bernatgel2.2k
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 2.3 years ago by a0103901238710 • updated 4 weeks ago by firatuyulur290
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Call fusion genes from WES data
wes gene fusion written 5 weeks ago by Paso10
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Common variants discovery
gwas wes snp written 6 weeks ago by yehchan5710
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Compare results of test pipelines with the ones from GIAB
giab wes compare written 3 months ago by noff.polina0 • updated 3 months ago by finswimmer12k
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Using Varscan without a matched normal
varscan wes written 3 months ago by sugus40 • updated 3 months ago by Chris Miller21k
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NA values in q-end of chromosomes (segments.p)
dnacopy R wes cnv segment.p written 2.8 years ago by rmateos.110 • updated 4 months ago by Biostar ♦♦ 20
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TCGA TMB: What exome size to use?
wes written 8 months ago by ngs_engineer0 • updated 5 months ago by bastien.nguyen0
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VarScan warning and exit after Invalid format for pileup at line 1
software error variant calling wes written 6 months ago by n.tear10 • updated 5 months ago by Biostar ♦♦ 20
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converting varscan2 output to sequenza
exome wes mutation snp written 2.2 years ago by a0103901238710 • updated 5 months ago by brunobsouzaa50
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bionano hybrid scaffold
optical mapping wes bionano illumina written 6 months ago by lait140 • updated 6 months ago by WouterDeCoster42k
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Mutect2 "somatic" variants with resistant tissue culture lines
gatk wes mutect2 variants genotyping written 7 months ago by shawn.w.foley1.1k • updated 6 months ago by Biostar ♦♦ 20
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Can CVNkit call CNV correctly at HLA genes region?
cnvkit wes hla written 6 months ago by MatthewP290 • updated 6 months ago by linouhao0
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Downstream analysis of VCF files obtained from VarScan2
vcf wes snpeff varscan2 somatic variations written 11 months ago by Raheleh90 • updated 7 months ago by bari.ballew190
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tool to detect large deletions
deletions wes igv written 7 months ago by lait140 • updated 7 months ago by bari.ballew190
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Annovar - Mouse Exome Sequencing
annovar wes whole-exome sequencing mouse written 2.4 years ago by cbatist0 • updated 7 months ago by Kevin Blighe51k
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3.0 years ago by Jerome Lin20 • updated 7 months ago by Biostar ♦♦ 20
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