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2
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1
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91
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How to take in consideration UMI in WES pipeline?
wes written 24 days ago by jonessara770 • 90 • updated 24 days ago by i.sudbery • 2.3k
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0
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79
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0
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Read simulators for Ion Torrent platform specific for WES
torrent simulation wes ion amliseq written 4 weeks ago by world_genesis • 0
6
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1
answer
162
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1
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IBD calculation indicates cryptic relatedness of 1 Individual with all others within a sequencing cohort
relatedness wes plink ibd written 6 weeks ago by maegsul • 100 • updated 6 weeks ago by chrchang523 ♦ 3.5k
4
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1
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225
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1
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sample mixing when demultiplexing
human samples ngs wes demultiplex bam written 3 months ago by lait • 80
0
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0
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141
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0
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low coverage & BAF plots have three peaks
b-allele frequency low coverage wes human samples written 3 months ago by lait • 80
0
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1
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155
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1
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CNVkit segmetrics error
wes cnv germline written 3 months ago by SPDouglas • 0 • updated 3 months ago by Eric T. • 2.2k
0
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1
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211
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1
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Create a custom exome .genome for IGV
exome wes igv sequencing written 3 months ago by jgarces • 0 • updated 3 months ago by h.mon ♦ 15k
1
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2
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557
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2
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 10 months ago by a01039012387 • 0 • updated 4 months ago by nilesh.gardi2688 • 0
0
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0
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124
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0
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High CG>CA and CG>TG errors from bait bias WES
wes bias written 4 months ago by maduh17 • 10
3
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290
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0
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Trouble with best practices
bioinformatics ngs wes samtools gatk written 4 months ago by erarroji • 0
0
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1
answer
580
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1
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converting varscan2 output to sequenza
exome wes mutation snp written 10 months ago by a01039012387 • 0 • updated 4 months ago by nilesh.gardi2688 • 0
2
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2
answers
311
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2
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how to distinguish mosaicism out of germline de novo mutations
mosaicism allele frequency wes de novo mutations written 4 months ago by lait • 80 • updated 4 months ago by donfreed • 1.2k
0
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1
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204
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1
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 5 months ago by lait • 80 • updated 5 months ago by morovatunc • 360
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220
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0
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Known Indels and BED sites
wes written 5 months ago by win • 760
2
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3
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539
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3
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Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq depth wes coverage exome sequencing written 8 months ago by bioinforesearchquestions • 140 • updated 5 months ago by Raony Guimarães • 820
1
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0
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300
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0
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Picard CollectHsMetrics malfunctioning
picard ngs wes collecthsmetrics written 6 months ago by erarroji • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 108k
1
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2
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522
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2
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WES germline CNV caller for trio analysis
wes cnv written 7 months ago by Nelson • 0 • updated 6 months ago by andrew.j.skelton73 ♦ 5.0k
6
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1
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424
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5 follow
1
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Inconsistent Coverage on X chromosome between genders
wes coverage written 7 months ago by kuckunniwid • 20
1
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1
answer
391
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1
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Difference between SNParray genotype dataset and WES genotype dataset
rnaarray wes genotype gwas written 7 months ago by boymin2020 • 10 • updated 7 months ago by Kevin Blighe ♦ 21k
18
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1
answer
546
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1
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can someone read this result to me
gene next-gen ngs wes sequencing written 7 months ago by dr.spear • 0
4
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1
answer
368
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1
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Problems with exome coverage at HRNR gene
sequence wes alignment hybrid capture written 8 months ago by ognjen011 • 150 • updated 8 months ago by Kevin Blighe ♦ 21k
0
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3
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776
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3
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Calculating coverage for WGS, WES and RNASeq
wgs sequence coverage wes rna-seq written 9 months ago by Joshi • 0 • updated 9 months ago by Philipp Bayer ♦ 5.5k
4
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0
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466
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Which tool is recommended for detecting CNVs in whole exome sequencing?
wes cnvs whole exome sequencing written 9 months ago by bioinforesearchquestions • 140
0
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0
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517
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detection of somatic mutations using RNA seq data for tumor samples paired with WES data for normal samples
wes rna-seq snp somatic mutations written 9 months ago by sara.younes • 10
0
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1
answer
739
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1
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WES samples failing ABSOLUTE
absolute wes ploidy purity written 10 months ago by mkaushal • 70 • updated 10 months ago by markus.riester • 260
1
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1
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740
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1
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sample order of the freebayes vcf output
vcf wes freebayes written 10 months ago by Ming Tang • 2.3k
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0
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592
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0
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Human and Mouse Benchmarking datasets for WGS, WES (variant callling) and RNASeq+differential analysis pipeline.
dnaseq wes rna-seq wgs written 10 months ago by unique379 • 50
1
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0
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480
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0
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Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing written 10 months ago by jonessara770 • 90 • updated 10 months ago by Pierre Lindenbaum ♦ 108k
7
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1
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681
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6 follow
1
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WES or WGS analysis of cancer samples with no matched germline
wgs wes snv cnv written 11 months ago by Bogdan • 510 • updated 11 months ago by markus.riester • 260
2
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1
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534
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1
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CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 11 months ago by plink_9857 • 40 • updated 11 months ago by Eric T. • 2.2k
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