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<prev • 177 results • page 1 of 6 • next >
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bbsplit running slow or out of memory?
next-gen wes atac-seq rna-seq sequencing written 16 hours ago by rrdavis • 20
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answers
58
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0
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VCF filtering settings for WES
vcf next-gen wes vcf filtering filtering written 9 days ago by luca t • 0
5
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1
answer
1.3k
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7 follow
1
answer
GATK4 VariantRecalibrator resource error
gatk4 ngs wes written 20 months ago by samreen.jasvi • 0 • updated 12 days ago by dare_devil • 1.3k
1
vote
1
answer
125
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1
answer
Distinguish tumor or normal type from WES data
wes written 16 days ago by Nich • 10 • updated 13 days ago by Kevin Blighe ♦ 69k
2
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1
answer
100
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1
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GATK BaseRecalibrator error.. how do I solve this?
gatk ngs wes written 17 days ago by kwanghoon • 20 • updated 16 days ago by Pierre Lindenbaum ♦ 133k
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2
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2.2k
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2
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WES samples failing ABSOLUTE
absolute wes ploidy purity written 3.4 years ago by mkaushal • 110 • updated 21 days ago by jingnany0 • 0
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190
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0
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Alignment in WES
trimmomatic exome wes alignment sequencing written 10 weeks ago by kanika.151 • 90 • updated 5 weeks ago by Biostar ♦♦ 20
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134
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0
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Optimal Number of SNPs in NA12878 WES Data
gatk wes snp written 6 weeks ago by hkarakurt • 100
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1
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137
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1
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Considerations when merging a gVCF with a VCF?
vcf gatk wes bcftools gvcf written 6 weeks ago by jon.klonowski • 70 • updated 6 weeks ago by kreenaijuriya • 0
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2
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530
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6 follow
2
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ACMG assignment tools
wgs wes acmg written 7 months ago by Eugene A • 90 • updated 6 weeks ago by akoussounadis • 10
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1
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178
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1
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plink2: no file/directory libgfortran, search has found libgfortran
vcf wes genetics plink sequencing written 7 weeks ago by jon.klonowski • 70 • updated 7 weeks ago by Mensur Dlakic • 8.4k
2
votes
2
answers
144
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2
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Calculating GC content around a specific genomic location
genome wgs gc wes snp written 7 weeks ago by hkarakurt • 100 • updated 7 weeks ago by benformatics • 2.0k
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0
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108
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0
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Freebayes best practice
genome wes freebayes variant detection written 7 weeks ago by luca t • 0 • updated 7 weeks ago by ATpoint ♦ 44k
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1
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145
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1
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Wes analysis - Quality control on sequenced data
exome workflow wes quality control written 9 weeks ago by AndreaSibi • 0 • updated 9 weeks ago by JC ♦ 12k
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0
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178
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0
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False positives in manta structural variant calling
sv structural variants wes manta written 9 weeks ago by Angel • 10
7
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1
answer
261
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1
answer
Why is gnomAD AF vs gnomAD exome AF so different?
wes next-gen gnomad written 11 weeks ago by nub6 • 20 • updated 11 weeks ago by Jorge Amigo ♦ 12k
0
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0
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166
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0
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What does they mean by exome size here
wgs wes written 4 months ago by A • 3.9k
2
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1
answer
224
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1
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Visual summary from a collection of .vcf files (WES)
vcf wes summary visual variants written 5 months ago by Angel • 10
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0
answers
196
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0
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How to analyze multiple MAF files
wes maftools written 5 months ago by a.basitkhan1990 • 0
2
votes
1
answer
198
views
1
answer
SNPs on a single transcript of a gene with multiple transcripts
gene wgs wes snp written 5 months ago by hkarakurt • 100 • updated 5 months ago by caggtaagtat • 1.4k
0
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1
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221
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1
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Is a compositional bias in Sequence Content of initial bases in WES reads normal?
wes sequence whole-exome-sequencing sequencing written 5 months ago by gerrit.bostelmann • 0
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192
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RoH for nonmodel species aligned to closely related reference (exomes)
exome wes nonmodel species roh written 5 months ago by eeheberlein • 0
0
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246
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0
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GermlineCNVCaller- Interval scattering for WES data
gatk wes germlinecnvcaller cnv written 5 months ago by Z-F • 20
0
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0
answers
217
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0
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Getting huge size of CNV region from CNV-kit with hybrid data.
cnvkit wes cnv written 5 months ago by Makplus T • 70
2
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0
answers
180
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Exome data analysis
wes written 6 months ago by pg_canada • 0
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205
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Simulating whole gene deletions for tuning a WES based CNV calling approach?
wes written 6 months ago by curious • 470
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2
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248
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2
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Quality check of NGS data
wgs ngs wes qc written 6 months ago by stanedav • 50 • updated 6 months ago by iraun • 3.8k
1
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1
answer
634
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1
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GATK Mutect2 Panel-Of-Normals generation
gatk panel-of-normal non-tumor wes mutect2 written 7 months ago by cocchi.e89 • 120 • updated 7 months ago by WouterDeCoster ♦ 45k
0
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195
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0
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VarAFT Analyze and Filtering Tool problem
varaft wes analyse tool written 7 months ago by qazwsx123 • 0
1
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0
answers
266
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0
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CNV callers for WES data
R next-gen cnv wes written 7 months ago by patelk26 • 140
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