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<prev • 155 results • page 1 of 6 • next >
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Differential Expression and Co-expression analysis from Cell type-specific datasets
ribotag wgcna deseq2 trap written 3 days ago by volvicpellegrino • 0 • updated 3 days ago by benformatics • 490
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WGCNA soft thresholding problem
wgcna data normalization soft thresholding rna-seq written 10 weeks ago by catagui • 30 • updated 7 days ago by leaodel • 60
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WGCNA and corAndPvalue
wgcna written 7 days ago by Sam • 100
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68
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WGCNA - focusing on one single gene
wgcna co-expression rna-seq R written 8 days ago by iriswt • 0 • updated 8 days ago by Kevin Blighe ♦ 37k
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How to get correlation coefficient value between the genes in the WGCNA module network?
wgcna R rna-seq coexpressionnetwork lncrna written 9 days ago by Vasu • 300
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How to calculate the shortest path between each pairs of genes in WGCNA
wgcna gene co-expression analysis R written 11 days ago by abc • 30 • updated 11 days ago by b.nota ♦ 6.0k
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Wgcna blockwisemodules: lower power results in modules with positive and negative kme values.
wgcna written 4 months ago by ductylerlv • 10 • updated 13 days ago by edammer • 10
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Collapsing probesets to genes on WGCNA
R gene expression wgcna collapserows() written 15 days ago by Davide Chicco • 70 • updated 14 days ago by aln • 260
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How to export a network of a specific module to Cytoscape
wgcna gene expression written 16 days ago by Apprentice • 10
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WGCNA analysis - use only linkage coefficients for results analysis
wgcna coexpression analysis written 5 weeks ago by hennet.lauriane • 0 • updated 19 days ago by Biostar ♦♦ 20
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Is it okay to remove uncharacterised transcripts from downstream analysis in RNA-seq?
wgcna rna-seq dge written 4 months ago by antoinefelden • 20 • updated 25 days ago by h.mon ♦ 23k
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Pick soft threshold for co-expression analysis and filtering step
wgcna network coexpression rna-seq R written 28 days ago by Biologist • 130 • updated 28 days ago by Kevin Blighe ♦ 37k
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Tips for network prediction: WGCNA vs ARACNE (or MINET)
wgcna network inference aracne written 4 months ago by piyushjo • 110 • updated 5 weeks ago by fuyingxue • 10
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In WGCNA, how to perform block-wise network construction but show the results using only 1 graph (1 dendrogram)?
wgcna blockwise network construction written 8 weeks ago by english.server • 130
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WGCNA categorical trait with more than 2 levels.
wgcna categorical trait written 8 weeks ago by english.server • 130 • updated 8 weeks ago by Renesh • 1.5k
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2
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WGCNA Network Analysis
R wgcna written 9 weeks ago by skjobs0123 • 0 • updated 9 weeks ago by Renesh • 1.5k
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What is the meaning of "weight" in the WGCNA Cytoscape edge output file?
wgcna edge weight weight written 14 months ago by elenajmichel • 50 • updated 9 weeks ago by Renesh • 1.5k
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WGCNA threshold values
rnaseq wgcna threshold clustering written 9 weeks ago by priyankaraina10 • 10 • updated 9 weeks ago by Kevin Blighe ♦ 37k
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How to deal with the NAs in WGCNA trait file?
wgcna trait file nas written 10 weeks ago by BioLite • 20 • updated 10 weeks ago by Kevin Blighe ♦ 37k
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140
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How to prepare input data for DiffCoEx
wgcna transcriptome R written 10 weeks ago by Reza • 0
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WGCNA for different comparisons
wgcna rna-seq written 3 months ago by user56 • 10
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Problem with ModuleSignificance - how to filter genes?
wgcna modulesignificance written 3 months ago by user56 • 10 • updated 3 months ago by h.mon ♦ 23k
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8 follow
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Eigen genes using WGCNA
wgcna eigengenes written 5 months ago by shivangi.agarwal800 • 40 • updated 3 months ago by Biostar ♦♦ 20
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R WGCNA - error in modulePreservation(): duplicated row.names not allowed
wgcna R written 4 months ago by feltrin88 • 0 • updated 3 months ago by jjt3f2188 • 0
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How to define and use samples of WGCNA
wgcna written 4 months ago by afli • 160
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WGCNA Co-expression network analysis on cuffdiff output
wgcna forum cuffdiff written 5 months ago by sbb • 10
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WGCNA error: "Error in cutreeDynamic"
software error wgcna next-gen rna-seq R written 4 months ago by giuseppe0525 • 20 • updated 4 months ago by WouterDeCoster ♦ 36k
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WGCNA analysis in normal and tumor case
wgcna modules written 4 months ago by shivangi.agarwal800 • 40 • updated 4 months ago by Kevin Blighe ♦ 37k
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Applying WGCNA in multiple data types
wgcna correlation multiomics written 5 months ago by rin • 30 • updated 4 months ago by Kevin Blighe ♦ 37k
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QUESTION: define RNA expression level of some genes as traits for WGCNA?
wgcna rna-seq written 4 months ago by giuseppe0525 • 20
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