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3
votes
1
answer
177
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1
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WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonferroni?
pearson wgcna network bicor written 7 days ago by jagoor93 • 0 • updated 5 days ago by Kevin Blighe ♦ 26k
3
votes
1
answer
165
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5 follow
1
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Problem for getting P-Value in Module-Trait Relationship in WGCNA
p-value wgcna network analysis written 7 days ago by modarzi • 20
0
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0
answers
781
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0
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How to let WGCNA use multiple cores
wgcna parallel multe-thread written 16 months ago by syrttgump • 30 • updated 18 days ago by yplee614 • 0
0
votes
1
answer
108
views
1
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WGCNA module interpretation question
wgcna co-expression network written 24 days ago by Alexie Li • 20 • updated 23 days ago by EagleEye ♦ 5.6k
0
votes
1
answer
159
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1
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WGCNA::cor namespace issue
wgcna cor written 5 weeks ago by arjunsbaghela • 10
0
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0
answers
80
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0
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Consensus WGCNA: gene only of one data set present in modules
wgcna multiexpr rna-seq written 5 weeks ago by baldauf • 10
9
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1
answer
252
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1
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problem for constructing Topological Overlap Matrix (TOM) in WGCNA Algorithm
wgcna rna-seq topological overlap matrix written 6 weeks ago by modarzi • 20 • updated 6 weeks ago by WouterDeCoster ♦ 31k
2
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0
answers
138
views
0
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Consensus WGCNA: differentially connected genes
wgcna rna-seq written 9 weeks ago by baldauf • 10 • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
113
views
1
answer
WGCNA network with condition and normal samples
wgcna network rna-seq written 8 weeks ago by saptarathideb • 0 • updated 8 weeks ago by Jake Warner • 650
5
votes
1
answer
243
views
1
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Order of operations in RNAseq analysis
wgcna deseq2 rna-seq written 9 weeks ago by crouch.k • 10 • updated 9 weeks ago by Kevin Blighe ♦ 26k
2
votes
1
answer
165
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1
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Problem for understanding the number of modules in construction network based on WGCNA algorithm
wgcna co-expression network written 10 weeks ago by modarzi • 20 • updated 10 weeks ago by Jake Warner • 650
1
vote
1
answer
126
views
1
answer
Could I use OS(overall survival) as the trait data in the WGCNA analysis?
wgcna rna-seq R written 10 weeks ago by joway12 • 10 • updated 10 weeks ago by JP • 0
8
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1
answer
691
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5 follow
1
answer
Error in (function...) thrown by WGCNA tutorial (R)
wgcna rna-seq R written 4 months ago by Kristin Muench • 290 • updated 11 weeks ago by wonderfulzhu1985 • 50
2
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1
answer
300
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1
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Error in (function...) thrown by WGCNA
gene R wgcna written 11 weeks ago by wonderfulzhu1985 • 50
0
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0
answers
155
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0
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WGCNA consensus network issue creating module-trait relationship
R correlation rna-seq wgcna written 12 weeks ago by marcusmgoldberg • 0
0
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0
answers
174
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0
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Study Modules significance (or Modules Preservation) in ONE network
wgcna modulepreservation modules significance written 4 months ago by harelarik • 30 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
142
views
0
answers
how to use WGCNA to predict lncRNA targets?
wgcna lncrna written 3 months ago by fanglujing • 30
4
votes
1
answer
237
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1
answer
data pre-processing for WGCNA Algorithm
wgcna fpkm tcga rna-seq pre-processing written 3 months ago by modarzi • 20 • updated 3 months ago by Kevin Blighe ♦ 26k
0
votes
1
answer
163
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1
answer
WGCNA with "interlinked" experimental conditions as traits
wgcna time series experimental conditions written 3 months ago by DBrauer • 0 • updated 3 months ago by Lluís R. • 690
0
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2
answers
930
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5 follow
2
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GO enrichment analysis using R
gene wgcna R written 9 months ago by daniel.naumovas • 0 • updated 3 months ago by Alexis Norris • 0
0
votes
0
answers
517
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0
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Software for gene co-expression network analysis / clustering enabling integration of paired miRNA-mRNA expression data
mrna wgcna mirna rna-seq gene clustering written 10 months ago by lech.kaczmarczyk • 20 • updated 3 months ago by Biostar ♦♦ 20
1
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0
answers
347
views
0
answers
Modifying Edge Weights in WGCNA
wgcna network igraph R written 4 months ago by shahroze786 • 0 • updated 4 months ago by Biostar ♦♦ 20
7
votes
1
answer
433
views
1
answer
How to find p-value of the modules in WGCNA?
wgcna microarray rna-seq R written 4 months ago by fernardo • 110 • updated 4 months ago by Kevin Blighe ♦ 26k
3
votes
0
answers
300
views
0
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WGCNA TOM calculation time
R rna-seq wgcna written 4 months ago by devarora • 10
3
votes
1
answer
305
views
1
answer
Weighted Gene Expression Network
wgcna network R written 4 months ago by shahroze786 • 0 • updated 4 months ago by Kevin Blighe ♦ 26k
0
votes
1
answer
847
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1
answer
WGNCA RNASeq without time series
wgcna time series rna-seq written 2.3 years ago by debitboro • 80 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
349
views
0
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wgcna modules detection and MEs
wgcna written 5 months ago by archie • 60
7
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1
answer
452
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1
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How to calculate eigengenes on arbitrary expression data, not inside WGCNA
rnaseq wgcna eigengene rna-seq written 6 months ago by tospo • 30 • updated 6 months ago by Jean-Karim Heriche ♦ 16k
1
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1
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1.5k
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1
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WGCNA: Output gene lists from consensus network modules
wgcna written 21 months ago by RossCampbell • 130 • updated 6 months ago by baldauf • 10
0
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0
answers
230
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0
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Cannot build Genetree using WGCNA
wgcna tcga rna-seq written 6 months ago by guanrujun51132 • 0
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