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1
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deepSplit=2 vs deepSplit=4
gene wgcna coexpression R written 4 days ago by hannicho • 10 • updated 4 days ago by zx8754 ♦ 9.9k
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35
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
wgcna gene expression coexpression written 5 days ago by O.rka • 230
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85
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How can I use WGCNA for constructing a co-expression network using TCGA project?
R co-expression rna-seq wgcna written 9 days ago by akhoundi.fatemeh68 • 0
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48
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coefficient of variation or median absolute deviation
mad wgcna cv batch effect written 10 days ago by NDA • 0
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77
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Qualitative traits in WGCNA?
wgcna correlation microarray written 11 days ago by mar.costa • 0
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91
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Analysis of a batch-normalized expression dataset
R normalization gsea wgcna written 20 days ago by DaveD • 0
1
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1
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128
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1
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Finding significant genes form the micro array data by using WGCN analysisA
gene wgcna R written 20 days ago by rohithkumar399 • 0 • updated 20 days ago by i.sudbery ♦ 10k
3
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1
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182
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1
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Filtering low variance genes for WGCNA
wgcna iqr variance filtering genefilter written 22 days ago by pennakiza • 60 • updated 22 days ago by Kevin Blighe ♦ 69k
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137
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[WGCNA]: How to extract genes that are connected to a hub gene of interest?
gene wgcna network forum hub written 5 weeks ago by obuhovadarina • 0
1
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1
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160
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1
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WGCNA: Problem with selecting soft threshold?
wgcna soft thresholding rna-seq written 6 weeks ago by shaimaa.m.hassan.18 • 0 • updated 6 weeks ago by andres.firrincieli • 1.1k
2
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1
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3.7k
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1
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WGCNA soft thresholding problem
wgcna data normalization soft thresholding rna-seq written 2.1 years ago by catagui • 30 • updated 6 weeks ago by shaimaa.m.hassan.18 • 0
0
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1
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134
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1
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Variance Stabilizing Transformation on RNAseqs coming from different studies
wgcna rna-seq vst written 7 weeks ago by Andrés Ribone • 0 • updated 7 weeks ago by Kevin Blighe ♦ 69k
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1
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172
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1
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Module sample correlation analysis in WGCNA
module trait relationship wgcna written 9 weeks ago by alim.hcu • 10 • updated 9 weeks ago by Kevin Blighe ♦ 69k
7
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2
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210
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2
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WGCNA - what is it for
wgcna written 10 weeks ago by msigno889 • 10 • updated 10 weeks ago by debitboro • 190
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170
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how to find consensus modules between 2 datasets by different platform through WGCNA
wgcna microarray rna-seq consensus module written 12 weeks ago by modarzi • 140
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289
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how to choose hub genes in wgcna
R wgcna written 3 months ago by parinv • 10
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126
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0
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How to calculate correlations between modules and samples in WGCNA?
wgcna written 3 months ago by Spencer • 20
2
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1
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156
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1
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WGCNA analysis and "survival time" as a trait?
wgcna survival written 3 months ago by catechize.2.learn • 120 • updated 3 months ago by Kevin Blighe ♦ 69k
3
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1
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270
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1
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Grey module trait correlation in WGCNA
wgcna module correlation written 3 months ago by christofffer • 0 • updated 3 months ago by Kevin Blighe ♦ 69k
6
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1
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3.1k
views
1
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binary phenotype or discrete traits in wgcna analysis
R co-expression rna-seq wgcna written 6.6 years ago by l0o0 • 210 • updated 4 months ago by _r_am ♦ 32k
3
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1
answer
258
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1
answer
WGCNA Setting Hard Threshold Error
wgcna error written 5 months ago by Al Murphy • 0 • updated 5 months ago by andres.firrincieli • 1.1k
3
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1
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197
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1
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When is it valid to use differentially expressed genes as input in WGCNA?
wgcna deg written 5 months ago by bren12345 • 0 • updated 5 months ago by Kevin Blighe ♦ 69k
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226
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from WGCNA to cytoscape
wgcna cytoscape export written 5 months ago by vujex • 0
2
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1
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193
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1
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differentially coexpressed genes using wgcna?
differentially coexpressed genes wgcna deg dcgl written 5 months ago by tonmoya.app • 0
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204
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WGCNA - consensus analysis - cutreeStatic - no samples selected
wgcna rna-seq written 6 months ago by mbk0asis • 590 • updated 5 months ago by Biostar ♦♦ 20
1
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207
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WGCNA Intramodular Connectivity
wgcna next-gen rna-seq R written 5 months ago by reara • 20
1
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1
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287
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1
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WGCNA analysis for gene of interest
wgcna rna-seq written 6 months ago by StartR • 20 • updated 6 months ago by geek_y ♦ 11k
1
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3
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332
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5 follow
3
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Extracting Genes that contribute to 1st PC
gene wgcna pca rna-seq written 6 months ago by reara • 20 • updated 6 months ago by andres.firrincieli • 1.1k
0
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225
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How create annotation file for WGCNA for RNA-Seq data?
wgcna rna-seq annotaion file written 6 months ago by mathavanbioinfo • 60 • updated 6 months ago by Kevin Blighe ♦ 69k
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206
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How to bypass WGCNA installation error?
wgcna microarray R written 6 months ago by fernardo • 130
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