workshop Posts

C: Calculate disease risk based on the genoytype of some SNPs by theoharis • 0
Imputing the combined risk from multiple genotypes based on published data on individual genotype...
C: show location of amino acid corresponding to SNP in a PDB model by theoharis • 0
What I've tried is searching on this forum and general search engines. Ive been unable to find an...
C: Differential network analysis for two treatments by lalithabhuvan • 0
Hi Kevin, You may be able to help me! I have the differentially expressed genes from a microarra...
C: Correcting batch effect in unevenly distributed groups by Kevin Blighe ♦ 45k
Hola Jenn, how can you define 'not succeeding' [with limma]? Can you show the PCA bi-plot with pe...
A: Merge DEseq and Cufflinks outputs by Kevin Blighe ♦ 45k
If you just want to use the test statistics (p-values, fold-changes, etc) from Cufflinks and DESe...
C: Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode by igor ♦ 8.0k
Have you tried HaplotypeCaller? That would help to determine if GATK is able to properly parse th...
A: Ncbi-Blast+ Version 2.2.23 'Make' Error by abhijit.synl • 50
Hello, Sorry to be reopening this thread after 7 years! But I am facing issues trying to install...
C: WGBS alignment with BitMapperBS by hcheng • 0
Thank you for your poster. I just worry about how to publish BitMapperBS ...
A: Differential network analysis for two treatments by Kevin Blighe ♦ 45k
Jon, your post is severely lacking in details. As an example, you have not stated whether or not ...
C: WGBS alignment with BitMapperBS by hcheng • 0
Thank you a lot : ). Following your suggestions, I'm trying to make BitMapperBS calculate MAPQ li...
C: Too many fails converting gene SYMBOL to ENTREZID by Kevin Blighe ♦ 45k
Your code is not reproducible because `diff_expr_tenmg` was never instantiated (?). Have you tri...
C: WGBS alignment with BitMapperBS by hcheng • 0
I'm still adding some new features to bitmapperbs, so these chinese comments have not been remove...

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