xena browser Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

1.4k

views

answers

TCGA PRAD Biochemical Recurrence Data Problem

prad data error xena browser tcga written 3.2 years ago by Andy Lee • 10 • updated 2.1 years ago by Yijun Tian • 20

Recent Votes

Recent Locations • All »

Netherlands, just now
United Kingdom, 1 minute ago

Recent Awards • All »

Teacher to Nicolas Rosewick ♦ 9.3k
Teacher to Joe ♦ 18k
Scholar to Joe ♦ 18k
Teacher to Pierre Lindenbaum ♦ 133k
Good Answer to dare_devil • 860
Appreciated to dare_devil • 860

Recent Replies

C: Count matrices correction before integrating single-cell RNA-seq datasets by rpolicastro ♦ 3.2k
Their fastq files are likely uploaded to SRA or ENA. If they are, I would recommend rerunning the...
C: K-mer sequencing vs sequence-alignment by GoldenRetriever • 10
The most difficult thing for me is to actually phrase my questions due to my very little knowledg...
C: how is obtained the BED score values (the 5th column of the bed files) in BED fi by Devon Ryan ♦ 98k
There's no possible answer to this, it can be anything.
C: K-mer sequencing vs sequence-alignment by GoldenRetriever • 10
This is probably the best answer I have seen so far, not to mention the funniest :P Thanks. I thi...
C: K-mer sequencing vs sequence-alignment by GenoMax ♦ 94k
Introduction sections for the papers have cross-references that you will likely find useful. `has...
C: K-mer sequencing vs sequence-alignment by Joe ♦ 18k
>What would happen if we did match many k-mers but they were all scattered, i.e. one k-mer seq...
C: K-mer sequencing vs sequence-alignment by Joe ♦ 18k
No idea about a definitive resource, but a cursory google turns up things like: https://datascie...
A: only one biological read present in fastq NCBI database for paired-end sequencin by ATpoint ♦ 44k
The output of `--split-files` is correct, see https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1...
A: Calculate Allele balance by sample by ashotmarg2004 • 10
After I wrote my "manual" bcftools version, I've actually found this: https://gatk.broadinstitute...
C: K-mer sequencing vs sequence-alignment by GoldenRetriever • 10
I have skimmed it. Thanks. But they are trying to improve technologies I have no clue about. I am...
C: ColSideColors' must be a character vector of length ncol(x) by anthonyimhez • 20
Hi Kelvin, I saw the error. It was from sample_dist I tranposed the matrix like this: samp...
C: K-mer sequencing vs sequence-alignment by GenoMax ♦ 94k
Guess you have not looked at links for the two papers I posted in my comment above.

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 2072 users visited in the last hour