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Phylogenetic Tree construction

R phylogenetics y-dna written 3.5 years ago by ammarsabir15 • 60 • updated 3.4 years ago by grant.hovhannisyan • 2.0k

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How to find if a y-chromosome has the M242 marker in IGV

haplotype marker sequence y-dna igv written 4.0 years ago by beneficii • 60

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Recent Replies

C: Duplicate reads versus unmapped reads by pkallurkar • 0
Thank you, really appreciate the prompt replies.
C: Duplicate reads versus unmapped reads by GenoMax ♦ 95k
Yes.
C: Duplicate reads versus unmapped reads by pkallurkar • 0
So, can some unmapped reads also be duplicate reads?
C: Duplicate reads versus unmapped reads by GenoMax ♦ 95k
> Are the unmapped reads the same as duplicate reads? Some undoubtedly are but they are not a...
A: Duplicate reads versus unmapped reads by Pierre Lindenbaum ♦ 133k
> . Are the unmapped reads the same as duplicate reads? Or do they include duplicate reads? u...
C: How Can I Count Snps In My Final Vcf Files by Pierre Lindenbaum ♦ 133k
why do you output %POS ? bcftools query -f 'x' input.vcf | wc -c
C: Selection Of Background Gene Set In Enrichment Analysis by i.sudbery ♦ 10k
This is an intersting topic, but I think it should really be a new question, especially given the...
A: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3 by kvshamsudheen • 60
There is a nice documentation now available in the [seurat wrapper github page][1] [1]: http...
C: GO enrichment analysis in R on Solanum lycopersicum proteomics dataset by Dunois • 490
Take a look at [goseq][1]. [1]: https://bioconductor.org/packages/release/bioc/html/goseq.html
A: How Can I Count Snps In My Final Vcf Files by ghada.alqubati101 • 0
try this > bcftools query -f '%POS\n' file.vcf.gz | wc -l
C: Ratio of Log2FC by Paul G • 0
Different amounts is because of biological constraints which we have no control over. Think of it...
C: How Can I Count Snps In My Final Vcf Files by ghada.alqubati101 • 0
try this bcftools query -f '%POS\n' file.vcf.gz | wc -l

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