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50 results • Page
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Showing top results for tag:
BWA
•
reset
1
vote
3
replies
153
views
BWA mem or samtools have any parameter to filter the mismatch reads?
mapping
samtools
reads
BWA
23 hours ago by
Damon_Wan
• 0
0
votes
0
replies
49
views
The effect of heterozygosity on genome alignment
heterozigosity
alignment
bwa
sequence
3 days ago by
Iseez
• 0
2
votes
8
replies
208
views
BWA mapping quality 0 for all reads
mapping
mapping_quality
bwa
updated 6 days ago by
Istvan Albert
87k • written 6 days ago by
OhHiImNewHere
• 0
4
votes
7
replies
241
views
How are BWA/bowtie/etc indices built for multiple fasta entries?
index
fasta
mapping
BWA
bowtie
3 days ago by
maxrwjones898
• 0
0
votes
0
replies
53
views
Resistome Analyzer Report
bwa
metagenomic
resistome
7 days ago by
ylhyang
• 0
0
votes
2
replies
108
views
Most stringent settings for bwa mem
alignment
bwa
dna
updated 13 days ago by
Istvan Albert
87k • written 13 days ago by
nanana
▴ 90
1
vote
5
replies
267
views
What is the most accurate short (ish) read aligner?
aligner
sequencing
bwa
minimap2
updated 13 days ago by
Istvan Albert
87k • written 15 days ago by
nanana
▴ 90
0
votes
4
replies
182
views
[E::bwa_idx_load_from_disk] fail to locate the index files
bwa
updated 15 days ago by
GenoMax
99k • written 16 days ago by
OhHiImNewHere
• 0
2
votes
1
reply
173
views
BWA-MEM or BWA-ALN + BWA-SAMSE for MGI sequencing
bwa
ali
sequencing
updated 17 days ago by
ATpoint
48k • written 18 days ago by
khanhlpbao
• 0
0
votes
0
replies
113
views
Total number of trimmed reads less than number of mapped reads
alignment
next-gen
sequence
SAMtools
BWA
6 weeks ago by
kspata
▴ 70
1
vote
4
replies
134
views
How to optimized the alignment with bwa mem
genome
bwa
alignment
6 weeks ago by
quentin54520
• 0
0
votes
1
reply
135
views
Alignment Error in BWA: The sequence "lcl|" was not found
bwa
DNA-Seq
alignment
6 weeks ago by
townsendae
• 0
1
vote
8
replies
2.6k
views
[mem_sam_pe] paired reads have different names. Without -p
bwa
alignment
next-gen
updated 8 weeks ago by
dare_devil
★ 1.4k • written 3.1 years ago by
windsur
▴ 20
3
votes
5
replies
153
views
problem to aligning FASTQ through BWA aligner
genome
BWA
alignment
updated 9 weeks ago by
andres.firrincieli
★ 1.2k • written 9 weeks ago by
modarzi
▴ 140
2
votes
6
replies
185
views
reduce speed terminal command submission
terminal
macos
bwa
updated 10 weeks ago by
Ram
32k • written 10 weeks ago by
rank
▴ 10
2
votes
6
replies
174
views
is "sequence Duplication levels" has bad effect on Alignment process?
bwa
FastQC
RNA-seq
updated 10 weeks ago by
ATpoint
48k • written 10 weeks ago by
modarzi
▴ 140
7
votes
6
replies
167
views
what should be view inside of SAM file?
SAM
BWA
updated 10 weeks ago by
Antonio R. Franco
★ 4.6k • written 10 weeks ago by
modarzi
▴ 140
0
votes
7
replies
157
views
Riboseq - pairs unaligned to rRNA get mixed up
riboseq
bwa
11 weeks ago by
blur
▴ 180
2
votes
9
replies
698
views
BWA error: no ID within the read group line
bwa
readgroups
RG
parallel
updated 3 months ago by
chenyangkang24
• 0 • written 4 months ago by
whb
▴ 20
1
vote
2
replies
196
views
BWA aligner error: paired reads have different names
bwa
3 months ago by
MAPK
★ 1.7k
0
votes
0
replies
179
views
CIRI2 not working properly with overlapping paired-end reads
RNA-Seq
overlapping reads
circrna
ciri
BWA
3 months ago by
dario.d
• 0
8
votes
6
replies
2.5k
views
Getting Index Error 12 When Attempting To Index A Genome With Bwa
bwa
next-gen
bioinformatics
updated 3 months ago by
Biostar
20 • written 8.2 years ago by
sindhuri.prakash
▴ 10
1
vote
3
replies
263
views
Is it possible to convert bam files with different parameters?
BWA
NGS
WGS
updated 4 months ago by
ATpoint
48k • written 4 months ago by
a661881
• 0
1
vote
3
replies
299
views
Using paired-end date as single-end for mapping with bwa mem. Good, bad or ugly?
alignment
bwa
paired-end
polishing
Racon
updated 4 months ago by
GenoMax
99k • written 4 months ago by
resug
▴ 10
0
votes
10
replies
221
views
Open files created with bwa
BWA
4 months ago by
mostafarafiepour
▴ 110
0
votes
1
reply
236
views
bwa aln writing speed became very slow after being very fast. What is the pattern of output size?
alignment
next-gen
bwa
updated 4 months ago by
d-cameron
★ 2.3k • written 5 months ago by
Jerry
• 0
0
votes
1
reply
1.4k
views
Trying to get consensus sequence from paired end alignment
paired-end
alignment
bwa
samtools
updated 5 months ago by
Biostar
20 • written 2.9 years ago by
Sus
▴ 20
16
votes
13
replies
7.0k
views
bwa mem and multiply mapped reads
bwa
repetitive genome
alignment
updated 5 months ago by
Biostar
20 • written 3.1 years ago by
lfreeborn
▴ 20
2
votes
4
replies
246
views
Variant calling from FASTA file
bwa
bowtie
fasta
vcf
5 months ago by
User000
▴ 440
1
vote
4
replies
202
views
BWA cigar not corresponding to reality
alignment
bwa
bowtie2
cigar
mapping
updated 5 months ago by
ATpoint
48k • written 5 months ago by
ADDNOTHIING
▴ 10
1
vote
9
replies
313
views
Two bams with similar flagstat output have very different file size
alignment
flagstat
bam
bwa
updated 5 months ago by
a.alnawfal.1992
▴ 150 • written 5 months ago by
freeheart.steven
▴ 10
0
votes
11
replies
6.0k
views
6 follow
Truncated sam file - Parse error
sam
bam
BWA
updated 5 months ago by
dB
• 0 • written 3.6 years ago by
fiona.newberry
▴ 80
1
vote
6
replies
247
views
bcftools mpileup create an empty output file
bcftools
mpileup
samtools
bwa
bam
5 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
18
replies
5.5k
views
Alignment with BWA and SAMtools
BWA
SAM-file
SAMtools
updated 5 months ago by
Biostar
20 • written 2.7 years ago by
Shelle
▴ 10
0
votes
0
replies
143
views
How to know if it is missing a gene or assembly error?
BWA
Bioinformatics
Assembly
5 months ago by
DNAngel
▴ 120
5
votes
8
replies
258
views
repeating bwa alignment
bwa
whole-genome sequencing
updated 5 months ago by
Biostar
20 • written 7 months ago by
gubrins
▴ 70
4
votes
2
replies
201
views
BWA alignment generating errors
BWA
alignment
5 months ago by
MAPK
★ 1.7k
1
vote
2
replies
265
views
Different reference human genome
bwa
human
reference
5 months ago by
v.shapovalova1
▴ 10
1
vote
1
reply
233
views
Trimmomatic trims most of the reverse strand
fastq
trim
trimmomatic
bwa
updated 6 months ago by
GenoMax
99k • written 6 months ago by
hkarakurt
▴ 110
2
votes
3
replies
221
views
Where to check out the alignment results for BWA
BWA
alignment
6 months ago by
field654
▴ 10
0
votes
2
replies
211
views
number of heterozygous and homozygous SNPs across lineages
SNP
bwa
samtools
bcftools
6 months ago by
romain.derelle
• 0
0
votes
9
replies
541
views
BWA-MEM - Improperly Paired Reads
bwa
next-gen
genome
alignment
gatk
updated 6 months ago by
GenoMax
99k • written 6 months ago by
mglasena
• 0
0
votes
3
replies
521
views
How get read group information from fastq files in SRA
read group
fastq
SRA
Bwa
updated 6 months ago by
ATpoint
48k • written 6 months ago by
zamani_2012
• 0
3
votes
7
replies
1.5k
views
bwa mem -R (RGline) format for DNBseq fastq
DNBseq
bwa
bwa mem
WGS
fastq
updated 7 months ago by
xxa
• 0 • written 20 months ago by
joe
▴ 180
0
votes
12
replies
533
views
6 follow
BWA mem and Samtools sort in Bash script
alignment
bwa
samtools
bash
updated 7 months ago by
Biostar
20 • written 8 months ago by
Vladislav
▴ 10
1
vote
2
replies
358
views
How BWA determine a paired-end read is proper or improperly paired?
alignment
BWA
7 months ago by
godth13teen
▴ 50
0
votes
0
replies
189
views
Are bwa alt contigs controlled purely by idxbase.alt?
bwa
7 months ago by
d-cameron
★ 2.3k
3
votes
4
replies
570
views
bwa index not generating, taking long time
alignment
bwa
assembly
index
updated 7 months ago by
Mensur Dlakic
★ 10k • written 7 months ago by
ccha97
▴ 20
1
vote
8
replies
237
views
Error: failed to locate the BWA index.
R
bwa
updated 8 months ago by
JC
12k • written 8 months ago by
L_LANKA
• 0
3
votes
4
replies
871
views
Big differences between two alignment tools outputs: BWA vs NanoPipe
bwa
nanopipe
alignment
bam
nanopore
updated 8 months ago by
Biostar
20 • written 11 months ago by
alexandru.bologa.marian
• 0
50 results • Page
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