Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
14 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
Showing top results for tag:
Basespace
•
reset
0
votes
0
replies
49
views
Manta SV caller: Why is the ${MANTA_INSTALL_PATH}/bin/configManta.py.ini file missing?
Basespace
Manta
7 days ago by
ilante
• 0
1
vote
3
replies
476
views
Copying BCL files from BaseSpace directly into tar.gz
basespace
BCL
14 months ago by
GBC_Zonatos
▴ 10
0
votes
0
replies
614
views
error in basespace qiime preprocessing
qiime
basespace
emp
illumina
qiime preprocessing
updated 3.0 years ago by
Kevin Blighe
72k • written 3.1 years ago by
nagpal511
• 0
11
votes
9
replies
1.3k
views
Getting files from BaseMount (Using find command to loop through the symlinks)
basemount
basespace
updated 3.2 years ago by
steve
★ 2.9k • written 3.2 years ago by
SaltedPork
▴ 110
0
votes
7
replies
1.8k
views
FASTQ Generation Difference between BaseSpace and BCL2FASTQ-v2
illumina
basespace
bcl2fastq2
fastq
updated 3.2 years ago by
swbarnes2
9.7k • written 3.2 years ago by
huseyinkoseoglu13
• 0
0
votes
0
replies
899
views
Unable to use shared data in Cufflinks analysis on Basespace
cufflinks
basespace
RNA-Seq
alignment
4.4 years ago by
jtickle94
• 0
1
vote
2
replies
2.1k
views
Illumina does not equal reads PF with real number of reads
illumina
fastq
basespace
4.6 years ago by
Paul
★ 1.4k
0
votes
7
replies
2.9k
views
Installation of Bcl2Fastq Fails
bcl2fastq
basespace
software error
illumina
4.8 years ago by
dec986
▴ 260
0
votes
7
replies
1.6k
views
base space upload
FAstq
basespace
5.0 years ago by
kanwarjag
★ 1.1k
3
votes
4
replies
3.4k
views
BaseSpace says NextSeq run finished, can't download FastQ
DNA-Seq
illumina
basespace
updated 5.0 years ago by
igor
12k • written 5.0 years ago by
Adrian Pelin
★ 2.4k
4
votes
8
replies
1.2k
views
Prediction of deletion of a base in repeat region
InDels
Deletion
Basespace
Variants
updated 5.3 years ago by
Devon Ryan
98k • written 5.3 years ago by
Amk
▴ 120
10
votes
7
replies
8.6k
views
how to get data from basespace
basespace
aws
updated 5.5 years ago by
IV
★ 1.3k • written 6.5 years ago by
polangxin
▴ 80
21
votes
10
replies
4.6k
views
As an illumina customer, do you use basespace, alternative cloud solution or pipelines built in-house?
illumina
basespace
updated 6.2 years ago by
Cliff Beall
▴ 450 • written 6.2 years ago by
mani824
▴ 70
20
votes
22
replies
10k
views
11 follow
Forum:
Nextseq for analysts
nextseq
basespace
casava
bcl2fastq
Forum
updated 6.5 years ago by
Joe Brown
▴ 70 • written 6.8 years ago by
Madelaine Gogol
5.2k
14 results • Page
1 of 1
Recent Votes
Answer: Hunting invisible characters?
Comment: Genotype Data in PLINK
Comment: Hunting invisible characters?
Comment: Hunting invisible characters?
Comment: A simple tutorial for a complex ComplexHeatmap
Comment: A simple tutorial for a complex ComplexHeatmap
Comment: A simple tutorial for a complex ComplexHeatmap
Recent Locations •
All
Chicago,
1 minute ago
San Diego, CA,
1 minute ago
Osaka,
2 minutes ago
China,
4 minutes ago
Chennai,
6 minutes ago
India,
10 minutes ago
United States,
11 minutes ago
Recent Awards •
All
Teacher
to
igor
12k
Popular Question
to
pandey.gaurav
▴ 130
Teacher
to
Philipp Bayer
6.9k
Popular Question
to
TriS
★ 4.3k
Scholar
to
Sam
★ 3.5k
Teacher
to
Alex Reynolds
32k
Scholar
to
ivivek_ngs
★ 5.1k
Recent Replies
Answer: GSEA for RNA_seq dataset
by
Zhilong Jia
★ 1.7k
Using all genes with signed P-value to rank genes, where the sign is from LogFC. and `GSEAPreranked` module in GSEA. ref: [Gene Ranki…
Comment: How can I Extract Transposable element from a new genome assembly?
by
Philipp Bayer
6.9k
if you can transform the bed to gff (galaxy has tools for that), you could also use liftoff which wraps all of this in a pipeline https://g…
Comment: A simple tutorial for a complex ComplexHeatmap
by
Rob
▴ 40
Great! Thank you ATpoint
Comment: Hunting invisible characters?
by
seidel
7.6k
Another way to see hidden characters is to pipe them through octal dump: `cat infile | od -c` this will print out hidden characters, newlin…
Comment: How can I Extract Transposable element from a new genome assembly?
by
GenoMax
99k
Align your assemblies to each other using an aligner like `lastz` ([**LINK**][1]). You could also use `blat` if you are sure the assemblies…
Comment: Trimmomatic-0.36 not finding adapter directory
by
GenoMax
99k
It is going to take as long as it takes. You need to be patient and wait until the prompt returns. Based on speed of your CPU/disk things c…
Comment: Hunting invisible characters?
by
GenoMax
99k
You could have looked at the file using `cat -vet` which would have shown all characters in the file. Printable and non.
Comment: Can't count features with featurecount
by
avelarbio46
▴ 10
I'm not sure about three things: What does -M and -O do exactly that could benefit in my case? Why should I specify -t if I don't necessa…
Comment: Hunting invisible characters?
by
geneticatt
▴ 120
Thank you, using `dos2unix` worked perfectly!
Answer: Hunting invisible characters?
by
Mensur Dlakic
★ 10k
You may want to read [**this**][1]. I think you may be able to fix your adaper file by typing: dos2unix i5R.txt If an error pops …
Comment: RNA seq analysis; two samples
by
Ram
32k
Please do not delete posts that have comments/answers.
Comment: ICE normalization using JuicerTools
by
sckinta
▴ 610
Is there a way to extract ICE bias from balanced .cool file? I know that you can find weight associated with each bin by `cooler dump --bal…
Comment: How to verify putative miRNA
by
boczniak767
▴ 740
Yeah, miRNA could be only verified in wet-lab. Take a look at [stem-loop PCR][1]. I've used it and it works really well. [1]: https://j…
Comment: R - A bioinformatic analysis programming language for NGS
by
Ram
32k
Because this is a plain copy-paste from the novogene page, it has numbers (pointers to specific references that the source has), but not th…
Comment: X amino acid in ensembl
by
Mensur Dlakic
★ 10k
This is correct. `X` means any amino acid. Most substitution matrices apply identical penalty (`-1`) when any amino-acid is aligned with X …
Traffic: 1838 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6