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Forum:
Nextseq for analysts
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Recent Replies
Comment: What does betaPrior do in DESEQ?
by
i.sudbery
12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values"
by
Yiming
•
0
Thank you so much!
I found an error with my code. And this works:
filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics
by
GenoMax
104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br />
<img src="…
Comment: gnomaAD exome and genome AF differences
by
humzakhan340
•
0
The point that genomes are much larger and more computationally intensive to work with is well-taken.
However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW
by
swbarnes2
10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: inquiry related to snpsift
by
rheab1230
•
0
I have one question related to earlier step where you are formating the .vcf file.
You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift
by
rheab1230
•
0
Hey Kevin,
its working now.
Earlier I use conda to install the software. But that is not working.
So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis?
by
m.sadman.sakib
▴
100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package
by
m.sadman.sakib
▴
100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping
by
cpad0112
16k
**Before**
```
$ tree .
.
├── 123_S1_R1_001
│ └── 123_S1_R1_001.fastq.gz
├── 123_S1_R2_001
│ └── 123_S1_R2_001.fastq.gz
├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file
by
Hamid Ghaedi
★
1.7k
There is no figure to look at that!
Comment: How to filter VEP results of "missing values"
by
GenoMax
104k
Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`?
…
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
by
Woa
★
2.8k
haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
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