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50 results • Page
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Showing top results for tag:
CNV
•
reset
2
votes
4
replies
370
views
Help with CNV calling using ExomeDepth
exomedepth
R
CNV
gCNV
exome
updated 2 days ago by
Joakim
▴ 20 • written 4 months ago by
luffy
▴ 20
0
votes
0
replies
71
views
CNV-calling single sample
copynumbervariation
cnv
GATK
na12878
4 days ago by
Boberoni
• 0
0
votes
2
replies
187
views
ExomeDepth negative BF (bayesian factor) values meaning
WES
DNA-seq
CNV
updated 5 days ago by
German.M.Demidov
★ 2.0k • written 10 weeks ago by
John
▴ 160
0
votes
0
replies
47
views
CNVkit flat reference file creation
CNV
ces
Flatreference
CNVkit
wes
6 days ago by
enes
• 0
0
votes
0
replies
61
views
Copy number Variation frequency plot
CNV
EPIC
450k
methylation
8 days ago by
user911111111
• 0
0
votes
2
replies
462
views
Structural variations (SV calling using Parliament2)
SV
CNV
software error
updated 10 days ago by
GenoMax
99k • written 7 months ago by
Nitha
▴ 10
0
votes
0
replies
129
views
germline vs somatic CNV GATK calling
CNV
germline
somatic
GATK
WGS
28 days ago by
cocchi.e89
▴ 140
2
votes
1
reply
115
views
Mapping after WGS show a parabel form
WGS
mapping
SNP
CNV
updated 1 day ago by
Boberoni
• 0 • written 28 days ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
147
views
gender determination and chrX CN calls
cnvkit
sequencing
next-gen
cnv
6 weeks ago by
erikt
• 0
7
votes
18
replies
2.6k
views
problem in matching the names between file names and patients Id in TCGA
TCGA
CNV
problem in matching
updated 7 weeks ago by
HB
• 0 • written 2.9 years ago by
nazaninhoseinkhan
▴ 410
0
votes
1
reply
144
views
List of good CNV detection methods?
CNV
algorithm
7 weeks ago by
860101959
▴ 10
3
votes
3
replies
147
views
Copy number variations from WES data
CNV
WES
updated 7 weeks ago by
Rongxin
▴ 30 • written 7 weeks ago by
shivangi.agarwal800
▴ 70
0
votes
1
reply
102
views
Problem using CNVkit with RNA-Seq Data to call CNV with Ensembl GRCh37 v75 annotation file
RNA-Seq
CNV
CNVkit
8 weeks ago by
lumal29
▴ 80
0
votes
0
replies
95
views
how to convert ped files to cnv
convertit
cnv
ped
8 weeks ago by
iag.14800108
• 0
0
votes
1
reply
146
views
Using ExomeDepth for GRCH38 processed samples to call CNVs
Exome
GrCh38
ExomeDepth
CNV
10 weeks ago by
nkausthu
▴ 30
0
votes
0
replies
158
views
genomewide CNV analysis and plot from low pass WGS data
CNV
CNVSEQ
WGS
11 weeks ago by
J.F.Jiang
▴ 860
55
votes
92
replies
8.8k
views
6 follow
How to extract the list of genes from TCGA CNV data
TCGA
CNV
genes
updated 3 months ago by
ycding
• 0 • written 3.0 years ago by
Chaimaa
▴ 250
24
votes
26
replies
1.3k
views
Tool:
ClinCNV: CNV detection from short reads
cnv
cna
variant calling
Tool
3 months ago by
German.M.Demidov
★ 2.0k
0
votes
0
replies
169
views
Determining breakpoint size in cnvnator-lumpy pipeline
lumpy
cnvnator
cnv
sv
4 months ago by
nitinra
▴ 10
0
votes
0
replies
267
views
Pipeline for merging vcf files from lumpy and cnvnator and sv filtering
cnv
sv
wgs
4 months ago by
nitinra
▴ 10
0
votes
0
replies
296
views
Interpretting cnvkit p-value results
cnvkit
cnv
updated 4 months ago by
Biostar
20 • written 6 months ago by
tjbencomo
▴ 10
1
vote
3
replies
256
views
Does anyone have a list of Copy Number Variation (CNV) Databases? If so please share.
CNV
Database
genome
gene
updated 4 months ago by
Pierre Lindenbaum
135k • written 4 months ago by
screadore
▴ 20
0
votes
0
replies
224
views
How do I get a vcf file containing germline information paired with tumor and normal
CNV
cnvkit
updated 4 months ago by
Pierre Lindenbaum
135k • written 4 months ago by
244349324
• 0
3
votes
2
replies
198
views
A question in terms of definition
CNV
WGS
Genome
updated 4 months ago by
Qiongyi
▴ 110 • written 4 months ago by
A
★ 3.9k
2
votes
3
replies
176
views
Explore CNV data from illumina Array
SNP
CNV
Illumina
updated 4 months ago by
bernatgel
★ 2.9k • written 4 months ago by
melania 2282
▴ 100
0
votes
0
replies
193
views
Download all CNV deletions at specified chromosomal locus
ClinVar
Variation Viewer
CNV
ncbi
4 months ago by
madison.elsaadi
• 0
3
votes
9
replies
558
views
Coverage plot of a complete genome
coverage
plot
CNV
written 4 months ago by
frymor2
▴ 10
0
votes
0
replies
149
views
Question about Penncnv software
penncnv
cnv
4 months ago by
zkafi1370
• 0
3
votes
4
replies
175
views
CNV data from Illumina OncoArray Cheap analysis
SNPchip
gwas
CNV
4 months ago by
melania 2282
▴ 100
1
vote
2
replies
243
views
How to call CNV without normal samples
sequencing
CNV
updated 4 months ago by
abedkurdi10
▴ 30 • written 4 months ago by
leovam173
▴ 10
0
votes
0
replies
186
views
Copy number variation analysis
CNV
TCGA
firebrowse
5 months ago by
anjuraas
▴ 10
0
votes
2
replies
190
views
PennCNV Software ; Not reporting CNVs in some samples
SNP
snp
CNV
5 months ago by
zkafi1370
• 0
1
vote
2
replies
242
views
How to merge CNVs of 400 samples?
CNV
updated 5 months ago by
Pierre Lindenbaum
135k • written 5 months ago by
oghzzang
▴ 40
1
vote
2
replies
177
views
Copy numbers zygosity
copynumbers
CNV
zygosity
next-gen
5 months ago by
jelisavetailic4
▴ 10
0
votes
1
reply
709
views
How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermlineContigPloidy --contig-ploidy-priors option ?
variant-calling
cnv
gatk
gCNV
updated 5 months ago by
xoaib
• 0 • written 8 months ago by
mikizu
• 0
0
votes
0
replies
216
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV
WGS
5 months ago by
J.F.Jiang
▴ 860
1
vote
0
replies
207
views
Copy Number Variations
cnv
gene
control-freec
ngs
vcf
5 months ago by
Nyksubuz
▴ 10
0
votes
0
replies
287
views
GATK somatic CNV results
gatk
cnv
somatic
6 months ago by
cocchi.e89
▴ 140
0
votes
0
replies
304
views
CNVkit 0.9.7: problems with incorrectly filtered bins, batch command outputs
cnvkit
cnv
targeted amplicon panel
6 months ago by
erikt
• 0
0
votes
1
reply
234
views
HRD score LST?
cnv
updated 6 months ago by
Ram
32k • written 6 months ago by
vctrm67
▴ 20
0
votes
0
replies
208
views
Using GRIN on WES data and general driver analysis preprocessing
sequencing
CNV
LOH
6 months ago by
andrei.rajkovic
• 0
1
vote
4
replies
236
views
Is it possible to compute the Loss of heterocigosity from the Copy number variation (CNV) data file ?
WGS
CNV
updated 6 months ago by
d-cameron
★ 2.3k • written 6 months ago by
aliciapm94
• 0
0
votes
0
replies
167
views
Calling copynumbers from Single-end GBS (genome by sequencing) data
CNV
GBS
single-end
Control-FREEC
6 months ago by
mikeruigrok
• 0
2
votes
4
replies
764
views
How are the log2 values in CNVkit .cnr files calculated?
cnvkit
.cnr
wgs
cnv
updated 7 months ago by
Kevin Blighe
72k • written 12 months ago by
Jordan
★ 1.2k
0
votes
1
reply
198
views
Copy number variation data for population structure analysis
CNV
updated 7 months ago by
khalid.belkhir
▴ 30 • written 7 months ago by
rthapa
▴ 40
1
vote
1
reply
202
views
CNV .vcf retrieve involved genes
cnv
vcf
gatk
genes
7 months ago by
cocchi.e89
▴ 140
1
vote
1
reply
278
views
convert GATK germline CNV .vcf output to .seg/.cns format to plot
gatk
cnv
vcf
seg
cns
updated 7 months ago by
newbio17
▴ 340 • written 7 months ago by
cocchi.e89
▴ 140
3
votes
9
replies
316
views
Somatic SNVs vs. Germline SNPs for allele-specific copy number analysis
CNV
7 months ago by
vctrm67
▴ 20
0
votes
0
replies
233
views
Why is a CNV of -1.8, 0.7 (...) more important than saying 2-fold, 3-fold (...) ?
CNV
7 months ago by
Penkster
• 0
0
votes
7
replies
726
views
GISTIC 2.0 for sequencing data
gistic
sequencing
wgs
cnv
cna
7 months ago by
vctrm67
▴ 20
50 results • Page
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