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46 results • Page
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Filtering for tag:
CRISPR
•
reset
0
votes
0
replies
166
views
Job:
Job: CRISPR Microbiome Bioinformatician
CRISPR
microbiome
job
bioinformatician
denmark
Job
4 weeks ago by
evanderhelm
• 0
1
vote
3
replies
187
views
How do you design primers with sequencing adapters to amplify CRISPR-edited regions?
primer-design
crispr
primer3
updated 4 weeks ago by
malikahsanali1998
• 0 • written 5 weeks ago by
genomics0101
▴ 10
1
vote
3
replies
941
views
What tools do you use to find the potential off-target sites when designing Cas9/Cas12 RNA-guided endonucleases?
CRISPR
off-target
alignment
5 weeks ago by
genomics0101
▴ 10
0
votes
0
replies
264
views
Human GeCKO library validation
CRISPR
Library
sgRNA
GeCKO v2
3 months ago by
mansisharma.iisc
• 0
0
votes
0
replies
543
views
Job:
Research assistant for Biotech Project at the Novo Nordisk Foundation Center for Biosustainability (CfB), Technical University of Denmark
CRISPR
molecular biology
DNA
Job
5 months ago by
info
▴ 60
0
votes
0
replies
520
views
Job:
Staff Scientist, Ph.D., or Postdoctoral Position in Bioinformatics
RNA-Seq
ChIP-Seq
Cancer
Epigenetics
CRISPR
Job
5 months ago by
Gjain
5.6k
3
votes
5
replies
320
views
CRISPR/Cas9 screen analysis: reads R1 and R2 mixed
crispr
screen
reads
illumina
sequencing
8 months ago by
Swimming bird
▴ 20
0
votes
2
replies
1.2k
views
How to retrieve all hmm from TIGRFAM for Cas (CRISPR-associated) proteins?
hmm
Cas
CRISPR
updated 12 months ago by
Biostar
20 • written 4.1 years ago by
mschmid
▴ 170
1
vote
5
replies
301
views
RNAseq Design Help
RNA-Seq
DESeq2
R
crispr
cas9
13 months ago by
tropeedward
• 0
1
vote
0
replies
444
views
Job:
PhD studentship in CRISPR bioinformatics and cancer genomics
sequencing
next-gen
CRISPR
Cancer
LncRNA
Job
13 months ago by
rory.johnson
▴ 20
0
votes
0
replies
212
views
about the design of guideRNA for CRISPRko/ CRISPRi/ CRISPRa
CRISPR
14 months ago by
Bogdan
★ 1.1k
2
votes
7
replies
313
views
How to identify 100ish deletion from NGS data
CRISPR
targeted sequencing
14 months ago by
haewon
• 0
1
vote
6
replies
600
views
Extract gRNA sequence using cutadapt
cutadapt
trimming
crispr
sequencing
16 months ago by
Swimming bird
▴ 20
0
votes
0
replies
325
views
News:
Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
single cell
bioinformatics
CRISPR
News
17 months ago by
kgosche
▴ 30
9
votes
7
replies
1.7k
views
7 follow
Fix FoxG1 deletion in my son using CRISPR
FoxG1
CRISPR
cure
updated 18 months ago by
Biostar
20 • written 5.0 years ago by
vivek.foxg1
▴ 10
0
votes
4
replies
443
views
GUIDEseq data links dead in github
GUIDEseq
github
Cas9
CRISPR
guideseq
18 months ago by
joe
▴ 180
1
vote
0
replies
291
views
CRISPR off-target validation with GUIDEseq
Cas9
GUIDEseq
CIRCLEseq
CRISPR
19 months ago by
joe
▴ 180
0
votes
0
replies
339
views
News:
Interested in learning more about CRISPR Genome Editing?
CRISPR
GenomeEditing
News
19 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
350
views
News:
Course: Approaches and Computational tools for CRISPR Genome editing
CRISPR
GenomeEditing
News
21 months ago by
carlopecoraro2
★ 2.0k
2
votes
1
reply
2.5k
views
How to interpret CERES gene scores for genome wide CRISPR-Cas9 knockout screens?
CRISPR
22 months ago by
patelk26
▴ 230
0
votes
0
replies
550
views
News:
CRISPR Genome Editing
genome
CRISPR
News
2.0 years ago by
carlopecoraro2
★ 2.0k
1
vote
0
replies
804
views
Job:
Global Bioinformatics Manager - Horizon Discovery, Lafayette Colorado
RNA-Seq
next-gen
CRISPR
gene editing
siRNA
Job
2.1 years ago by
shawn.mek
▴ 10
0
votes
2
replies
554
views
What is the best way to costract a Crispr library
crispr
library
sgRNA
2.2 years ago by
Assa Yeroslaviz
★ 1.5k
9
votes
3
replies
1.8k
views
Install CRISPRCasFinder under Ubuntu without having administrator rights
install
crispr
linux
updated 2.4 years ago by
WouterDeCoster
45k • written 2.4 years ago by
saadleeshehreen
▴ 70
0
votes
3
replies
2.4k
views
RIGER extension in GENE-E
sequencing
next-gen
crispr
Gene Ranking
updated 2.5 years ago by
natallah
▴ 10 • written 3.6 years ago by
ashwani.vit
• 0
0
votes
1
reply
810
views
Looking CRISPR-Cas9 sequencing Data
sequencing
crispr
ngs
2.8 years ago by
bi_Scholar
• 0
0
votes
1
reply
624
views
Analyzing CRISPR and RNAi genome wide screens
CRISPR
RNAi
meta analysis
2.8 years ago by
spacemorrissey
▴ 240
1
vote
4
replies
933
views
Newbie Question: How to find overlap of multiple cellline datas
ngs
overlap
CRISPR
updated 2.8 years ago by
Biostar
20 • written 3.7 years ago by
skim
▴ 50
4
votes
9
replies
968
views
Genome-wide CRISPR/Cas9 and gene expression?
crispr
cas9
microarray
gene expression
updated 2.9 years ago by
GouthamAtla
11k • written 3.0 years ago by
fr
▴ 150
1
vote
1
reply
846
views
Job:
DIRECTOR of COMPUTATIONAL BIOLOGY, Cedilla Therapeutics, Cambridge, MA, USA
CRISPR
Oncology
High Throughput Sequencing
Job
updated 2.9 years ago by
GenoMax
99k • written 2.9 years ago by
tnicholson
▴ 10
0
votes
0
replies
883
views
Job:
Post-doc positions on non-coding RNAs in neurological diseases at RIKEN Yokohama Japan
single cell
CRISPR
lncRNA
GWAS
Job
2.9 years ago by
chungchau.hon
▴ 10
0
votes
0
replies
550
views
How to analyse data from genetic screening followed by NGS ?
screening
gene-trapping
gRNA
crispr
DE-analysis
3.1 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
780
views
crispr mageck analysis ,Sam library
genome
Crispr
library
Sam
updated 3.3 years ago by
Pierre Lindenbaum
135k • written 3.3 years ago by
11yj3312
• 0
2
votes
0
replies
1.3k
views
CRISPR screening analysis using mageck
mageck
crispr
screening
reads
3.6 years ago by
Folder40g
▴ 140
12
votes
4
replies
1.1k
views
Forum:
Update: CRISPR off-target effects causing unexpected mutations - good science or media hype?
CRISPR
off target
Forum
3.8 years ago by
YaGalbi
★ 1.5k
1
vote
5
replies
935
views
How to find which residues in a protein which are targetable by CRISPR
genome
gene
crispr
cas9
updated 3.9 years ago by
genecats.ucsc
▴ 570 • written 3.9 years ago by
abel.tan13
▴ 10
0
votes
0
replies
1.9k
views
Job:
Computational Postdoc positions available Harvard Medical School/Massachusetts General Hospital
MACHINE LEARNING
SINGLE CELL
EPIGENOMICS
CRISPR
Job
4.0 years ago by
lucapinello
• 0
0
votes
3
replies
833
views
CRISPR repeat identification tool comparison
alignment
blast
crispr
updated 4.1 years ago by
Alex Reynolds
32k • written 4.1 years ago by
kspata
▴ 70
1
vote
0
replies
1.6k
views
Job:
Postdoc HighDimensional Statistical Modelling in Multi-Omics and Drug Development at EMBL Germany
CRISPR
RNA-Seq
ChIP-Seq
Job
4.5 years ago by
EMBL Recruitment
▴ 20
0
votes
1
reply
2.3k
views
CRISPR screen Trimming with mageck low mappability
crispr
screen
trimming
mapping
updated 4.6 years ago by
Biostar
20 • written 4.7 years ago by
morovatunc
▴ 470
0
votes
0
replies
1.0k
views
How to favor consistently occurring rare event in CRISPR screen analysis
CRISPR
4.6 years ago by
morovatunc
▴ 470
0
votes
0
replies
2.1k
views
How to confirm correct integration of a reporter using the CRISPR/Cas9 mediated homology-repair DNA pathway?
CRISPR
sequencing
4.7 years ago by
Andrea
▴ 10
1
vote
0
replies
1.8k
views
Job:
Postdoctoral Fellow - Statistical Computing in Multi-Omics and Personalized Medicine, Heidelberg, Germany
CRISPR
R
phenotype
genotype
Job
4.7 years ago by
EMBL Recruitment
▴ 20
3
votes
0
replies
1.4k
views
Job:
Computational Biologist at Intellia Therapeutics in Cambridge MA
CRISPR
genomics
genome editing
Job
4.7 years ago by
reynald.lescarbeau
▴ 50
0
votes
0
replies
1.5k
views
Job:
Postdoc - Statistical Computing in Multi-Omics and Drug Development , Heidelberg, Germany
proetomics
CRISPR
C
R
Job
updated 4.7 years ago by
GenoMax
99k • written 4.7 years ago by
EMBL Recruitment
▴ 20
0
votes
0
replies
1.5k
views
Job:
Postdoctoral position studying the systems biology of cancer progression at Cold Spring Harbor Laboratory
cancer
TCGA
systems biology
CRISPR
postdoc
Job
5.0 years ago by
sheltzer
• 0
46 results • Page
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Recent Votes
Answer: How to visualize Multiple Sequence Alignment with python ?
Answer: How to visualize Multiple Sequence Alignment with python ?
Comment: RNA-SEQ count data as input for Machine Learning
Answer: RNA-SEQ count data as input for Machine Learning
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
Answer: What Do You Waste Your Time On
C: What Do You Waste Your Time On
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Recent Replies
Answer: How to visualize Multiple Sequence Alignment with python ?
by
Mensur Dlakic
★ 10k
Can't think of a particularly good alignment viewer in python. If you are more interested in result rather than doing it in python, ther…
Comment: Using outgroup in gene family dendograms
by
Mensur Dlakic
★ 10k
> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here? Most definitely no…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Istvan Albert
87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA
by
biobiu
▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position
by
cpad0112
15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Anand Rao
▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position
by
Dunois
▴ 610
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms
by
Rogerio Ribeiro
▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA
by
Zhilong Jia
★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position
by
hugo.avila
▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On
by
ponganta
▴ 160
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On
by
ponganta
▴ 160
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data
by
ponganta
▴ 160
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data
by
Dunois
▴ 610
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data
by
grant.hovhannisyan
★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
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