Limit : all time
all time today this week this month this year
486 results • Page 1 of 10
Sort: Rank
Rank Views Votes Replies
Filtering for tag: Cancer • reset
0
votes
1
reply
446
views
Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?
cancer rawcounts(RNAseq) breakpoint downloaddata
updated 6 days ago by 72k • written 15 days ago by ▴ 910
1
vote
2
replies
978
views
Interpretation of functional prediction pathogenicity scores regarding variants with multiple transcripts in ANNOVAR
annovar pathogenicity cancer CADD
5 days ago by svlachavas ▴ 730
0
votes
0
replies
73
views
Job: Postdoc in computational cancer biology at IEO, Milan, Italy
ppi cancer networks genomics
11 days ago by martin.schaefer ▴ 10
0
votes
0
replies
131
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School UK
uk cancer postdoc
16 days ago by dan.brewer ▴ 120
4
votes
2
replies
360
views
Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer Genome Atlas)
ENCODE mutation maf TCGA cancer
18 days ago by peter ▴ 10
13
votes
10
replies
4.5k
views
Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
RNA-Seq cancer variant calling gene fusion Tool
21 days ago by uhrigs ▴ 130
0
votes
0
replies
246
views
Job: PhD student in precision cancer bioinformatics | Charite, Berlin, Germany
cancer ngs berlin clinical precision Job
25 days ago by naveed.ishaque • 0
0
votes
0
replies
87
views
A database of cancer super-enhancers
ChIP-Seq super-enhancers cancer
26 days ago by MoHallal • 0
10
votes
2
replies
758
views
Tutorial: Methylation Analysis Tutorial in R_part2
methylation RNA-Seq R cancer Tutorial
4 weeks ago by Hamid Ghaedi ★ 1.3k
0
votes
0
replies
87
views
Looking for VCF files and clinical data for cancer (prostate or cll or breast)
vcf cancer somatic mutations access to data
4 weeks ago by ansakim20 • 0
0
votes
0
replies
94
views
Finding mutational burden in TCGA dataset
genome python UTR tcga cancer
5 weeks ago by Jamie Watson • 0
13
votes
0
replies
2.8k
views
Tutorial: Methylation Analysis Tutorial in R_part1
methylation cancer R Tutorial
5 weeks ago by Hamid Ghaedi ★ 1.3k
0
votes
0
replies
93
views
METABRIC sample IDs
METABRIC sample cancer mRNA ID
7 weeks ago by Sylvia • 0
2
votes
4
replies
125
views
where to find cancer data
SNP cancer next-gen data fastq
updated 8 weeks ago by 47k • written 8 weeks ago by • 0
2
votes
3
replies
133
views
VEP for cancer annotation using COSMIC
VEP COSMIC Cancer
updated 8 weeks ago by 22k • written 8 weeks ago by ▴ 30
0
votes
5
replies
185
views
development of NGS pipeline for variant calling in lung cancer
cancer NGS pipeline snp next-gen
updated 8 weeks ago by ▴ 30 • written 8 weeks ago by • 0
0
votes
0
replies
115
views
Calling UTRs in TCGA dataset
TCGA cancer UTR ORF
9 weeks ago by Jamie Watson • 0
6
votes
11
replies
5.5k
views
9 follow
RNAseq data and PAM50 method
rna-seq PAM50 Breast Cancer unsupervised
updated 11 weeks ago by 20 • written 6.9 years ago by ▴ 20
25
votes
23
replies
11k
views
14 follow
Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
cancer exome-sequencing copynumber
updated 3 months ago by • 0 • written 7.2 years ago by ★ 3.0k
16
votes
2
replies
5.4k
views
Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
python R cancer genetics sequencing Job
3 months ago by Cyriac Kandoth 5.5k
8
votes
4
replies
238
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis cancer driver genes
updated 3 months ago by 72k • written 3 months ago by ▴ 190
0
votes
0
replies
168
views
Correcting variant allele fraction using tumor purity (experimentally measured)
variant calling sequencing cancer SNP next-gen
3 months ago by Luca Beltrame ▴ 220
0
votes
0
replies
492
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
cancer bioinformatics postdoc biomarkers Job
3 months ago by dan.brewer ▴ 120
1
vote
2
replies
1.4k
views
targeted bam file from database for breast cancer
ngs cancer targeted
updated 3 months ago by 20 • written 3.6 years ago by ▴ 180
0
votes
0
replies
392
views
Job: FDA Postdoctoral Research Fellowship To Quantify Hotspot Myeloid Neoplasm Associated Mutations in Blood by EC-NGS
sequencing next-gen gene mutation cancer Job
4 months ago by meagan.myers • 0
70
votes
13
replies
11k
views
12 follow
Tutorial: Exploring cancer mutation data portals
Cancer Data Portal Mutation TCGA ICGC Tutorial
4 months ago by Malachi Griffith 18k
2
votes
0
replies
214
views
Tool: driveR - Prioritizing Cancer Driver Genes Using Genomics Data
driver R cancer driver gene Tool
4 months ago by egeulgen ★ 1.1k
0
votes
0
replies
520
views
Job: Staff Scientist, Ph.D., or Postdoctoral Position in Bioinformatics
RNA-Seq ChIP-Seq Cancer Epigenetics CRISPR Job
5 months ago by Gjain 5.6k
3
votes
0
replies
341
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
cancer postdoc machine learning Job
5 months ago by dan.brewer ▴ 120
0
votes
3
replies
704
views
Job: Master internship in bioinformatics: Inference of single-cell miRNA-seq data in cancer (to be followed by PhD)
miRNA single cell RNA-seq R cancer Job
updated 5 months ago by • 0 • written 6 months ago by ▴ 40
4
votes
1
reply
333
views
Forum: Help with Bioinformatics Course
cancer Forum
written 6 months ago by • 0
0
votes
1
reply
574
views
Log Transformation of Raw data before Robust Z-score analysis
cells Z scores statistics Robust Z-scores cancer
updated 5 months ago by 11k • written 5 months ago by • 0
24
votes
0
replies
1.4k
views
Tutorial: Resources / databases for clinical interpretation of cancer variants
variant interpretation annotation clinical cancer Tutorial
6 months ago by Malachi Griffith 18k
133
votes
21
replies
60k
views
18 follow
Database Of Tumor Suppressors And/Or Oncogenes
cancer gene database oncogene tumor
6 months ago by Malachi Griffith 18k
8
votes
6
replies
2.9k
views
Problem Analyzing Tumor-Normal Pairs With Varscan
varscan cancer samtools next-gen
updated 6 months ago by 20 • written 8.7 years ago by ▴ 250
0
votes
0
replies
199
views
Efficiently obtaining genomic transcript levels of thousands of patient samples by cancer types
cancer RNA-Seq
6 months ago by theodore.killian ▴ 20
0
votes
4
replies
283
views
Which transcriptome assembler is recommended for short-read cancer transcriptome data?
assembly short-read RNA-Seq cancer
7 months ago by Benedek Dankó ▴ 10
5
votes
4
replies
297
views
Getting started in a career in Bioinformatics
Genomics Population data analysis Cancer
7 months ago by Anna Toussaint ▴ 20
1
vote
0
replies
184
views
How to extract list of proteins delectable by immune histochemistry?
Immune Histochemistry IHC detection cancer
8 months ago by svp ▴ 420
0
votes
0
replies
303
views
Gene copy number Alteration Interpretation
purple CNA WGS Cancer
updated 9 months ago by 20 • written 10 months ago by ▴ 130
0
votes
2
replies
222
views
Combining normal+tumor fastq files to make a diluted tumor sample
matchedNormal tumor cancer fastq dilution
9 months ago by noshadho ▴ 10
0
votes
0
replies
595
views
Job: Postdoctoral Researcher in Cancer Biology and Genomics (Boston)
Genomics Cancer Spatial Single-Cell R Job
9 months ago by rubendries ▴ 10
2
votes
0
replies
580
views
Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - NEW DEADLINE
postdoc cancer Job
9 months ago by dan.brewer ▴ 120
1
vote
2
replies
221
views
censoring time for ICGC records with no followup or date of death?
icgc survival cancer
9 months ago by mk ▴ 190
0
votes
0
replies
211
views
Aggregation and analysis of MAF files
maf cancer genomics R
9 months ago by weisekyle • 0
0
votes
0
replies
297
views
KEGG pathway for esophageal cancer and liver cancer
kegg escc liver cancer
updated 10 months ago by 20 • written 15 months ago by ★ 8.6k
0
votes
1
reply
456
views
Co-expression analysis of single cell RNA seq data to identify pathway associations
RNA-Seq R co-expression cancer
updated 10 months ago by 72k • written 10 months ago by • 0
2
votes
6
replies
536
views
I need help with some explanation
cancer WGS VAF evolution
updated 10 months ago by 20 • written 11 months ago by ★ 3.9k
1
vote
1
reply
1.9k
views
Rna-Seq Cancer Cell Line, Hg19 Or Cancer Cell Line Genome?
rna-seq hg19 cancer
updated 10 months ago by 20 • written 7.0 years ago by ★ 2.4k
1
vote
6
replies
436
views
Conversion of Vep.vcf to MAF format?
cancer vep maf snp genome
10 months ago by Thind amarinder ▴ 130
486 results • Page 1 of 10
Recent Votes
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Answer: Tool to find chromosome specific repeats
Answer: What Is The Total Size Of Hgdownload.Cse.Ucsc.Edu/Gbdb/Mm9
Comment: correct way of analyzing cell proportions in singlecell data
Recent Locations • All
China, just now
Memphis, TN, 15 minutes ago
pune, India, 20 minutes ago
USA, 20 minutes ago
Hyderabad India, 24 minutes ago
United States, 29 minutes ago
Israel, 30 minutes ago
Recent Awards • All
Teacher to Asaf 8.6k
Popular Question to seta ★ 1.5k
Popular Question to Philipp Bayer 6.9k
Popular Question to Kai_Qi ▴ 100
Appreciated to igor 12k
Popular Question to 9606 ▴ 320
Teacher to Lemire ▴ 600
Recent Replies
Answer: Expression of gene of interest across conditions in single-cell data by jared.andrews07 9.1k
Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
Comment: Extracting only tumor samples from Single cell RNASeq by jared.andrews07 9.1k
You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
Comment: Cell composition in each condition of single cell data by paria.alipour ▴ 20
Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens by Quanyou • 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens by Quanyou • 0
This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
Answer: bbmap, mapq and uniquelly mapped reads filtering by GenoMax 99k
Many threads exist that show how to extract uniquely mapped reads. Here are a couple of examples:<br> https://www.biostars.org/p/276216/#27…
Comment: Cell composition in each condition of single cell data by rpolicastro 5.1k
The images seem to be missing from your post
Comment: Limma experiment design and making contrasts by kra277 • 0
Thank you very much for this. Much appreciated.
Comment: Limma experiment design and making contrasts by Kevin Blighe 72k
Hi, these follow the same principles as formulae used in regression modelling, so, you may want to focus on that (when searching). What lim…
Comment: Limma experiment design and making contrasts by kra277 • 0
That is very insightful. Thank you very much for the answer. Also, if I may ask, could you please point me to the articles for understandin…
Comment: Keep values from VCF file into Ensembl VEP annotation by brunobsouzaa ▴ 510
Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
Comment: Raw read processing using trimmomatic by boczniak767 ▴ 740
Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
Comment: should stop codon be counted as part of CDS by sullis02 • 0
Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
Comment: How do I compare degree and betweenness centrality for different PPI networks? by Istvan Albert 87k
I am not all that knowledgeable of Cytoscapes features and scripting capabilities, but if it does not support that operation you can expo…
Comment: Creating reference genome for mapping and then selecting by Istvan Albert 87k
you would get the counts as you would get them in any other case, how do you know something maps to chromosome 1 of human genome? Because i…
Traffic: 1262 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6