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Showing top results for tag: Cancer • reset
1
vote
2
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182
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Variant Allele Frequency
Cancer
updated 11 days ago by ★ 2.4k • written 11 days ago by • 0
0
votes
0
replies
79
views
Weird PCA plot using WGCNA results
cancer PCA expression WGCNA plot
11 days ago by seta ★ 1.5k
0
votes
0
replies
165
views
Job: PhD student for a computational breast cancer research project
Bioinformatics PhD Cancer Omics
12 days ago by s.vosberg • 0
3
votes
3
replies
179
views
Germline Cancer Mutations
Cancer
updated 12 days ago by ★ 2.5k • written 12 days ago by • 0
1
vote
2
replies
225
views
Module preservation analysis using WGCNA
cancer expression WGCNA samples gene
updated 15 days ago by ★ 1.7k • written 17 days ago by ★ 1.5k
0
votes
1
reply
138
views
Approach to building regression models or classifiers with high number of parameters but small sample size
cancer machine-learning R scRNA-seq RNA-seq
updated 25 days ago by ★ 13k • written 26 days ago by ▴ 10
0
votes
1
reply
142
views
Dataset of different timepoints of a cancers progression in the same patient?
cancer RNAseq
updated 27 days ago by ▴ 180 • written 28 days ago by • 0
3
votes
5
replies
280
views
Downloading WGBS sequencing reads for cancer sample and healthy sample
Dataset Cancer WGBS Healthy
8 days ago by Nishat • 0
0
votes
0
replies
135
views
Job: PDRA in Computational Biophysics and Cancer Research, University of Manchester, UK
Bioinformatics StructuralGenomics Cancer pH-dependence
6 weeks ago by jim.warwicker • 0
0
votes
0
replies
148
views
Job: Post-doctoral Fellow in Cancer Biology and Immunology
biology immunology Cancer molecular
7 weeks ago by waihungh ▴ 20
0
votes
0
replies
171
views
Job: Postdoctoral Fellowship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
8 weeks ago by waihungh ▴ 20
0
votes
0
replies
228
views
Job: PhD Scholarship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
8 weeks ago by waihungh ▴ 20
0
votes
3
replies
210
views
Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 10 weeks ago by ▴ 560 • written 10 weeks ago by ▴ 490
3
votes
2
replies
278
views
Suggestions for an undergraduate research project on glioblastoma
glioblastoma Python Cancer R
updated 9 weeks ago by 34k • written 11 weeks ago by ▴ 90
4
votes
3
replies
253
views
which genes causes breast cancer?
Breast Cancer
updated 3 months ago by 49k • written 3 months ago by • 0
0
votes
3
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329
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Identifying samples from COSMIC/cBioportal etc with only a specific driver mutation
cancer genomics
updated 3 months ago by 34k • written 3 months ago by • 0
7
votes
3
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452
views
How to make a summary plot like below?
cancer classes Oncoplots
updated 3 months ago by ▴ 200 • written 3 months ago by • 0
0
votes
0
replies
129
views
How to merge the mutations from multiple samples of one patient
MutSig2CV_NC MutSig2CV cancer mutation merge
3 months ago by Rongxin ▴ 30
22
votes
1
reply
4.1k
views
Tutorial: Methylation Analysis Tutorial in R_part1
Tutorial cancer methylation R
updated 3 months ago by ▴ 30 • written 11 months ago by ★ 1.7k
0
votes
0
replies
228
views
Tool: Help solve the cancer puzzle & benefit your research! SimBioSys PhenoScope for integrative multi-modal and multi-omic data analytics
multi-modal multi-omic breast analytics cancer imaging
3 months ago by johnpfeiffer • 0
0
votes
1
reply
211
views
Important genes beyond PAM50 for breast cancer classification
genes cancer deeplearning classification pam50
3 months ago by udi • 0
0
votes
0
replies
170
views
Tool: SimBioSys PhenoScope - a cloud-based multi-modal multi-omic data analytics platform for oncology researchers
cloud-based analytic cancer multi-modal multi-omic
3 months ago by johnpfeiffer • 0
0
votes
0
replies
176
views
Job: Senior Staff Bioinformatician at the University of Melbourne Centre for Cancer Research
cancer genomics
4 months ago by Oliver • 0
1
vote
0
replies
247
views
Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
cancer wehi australia
4 months ago by Gordon Smyth ★ 3.3k
3
votes
2
replies
353
views
Is anticancer action of HDAC inhibitors - cancer cells specific or it may cause death to other cell types ?
cancer
updated 5 months ago by 25k • written 5 months ago by ▴ 20
0
votes
0
replies
271
views
Job: Group Leader Computational Cancer Biology - VIB-KU Leuven, Belgium
vib groupleader cancer biology computational
5 months ago by leen.notebaert • 0
3
votes
2
replies
383
views
Contradiction in Harzard ratio and Log fold change
Foldchange Cancer HR HarzardRatio LogFC
5 months ago by Amir.Asgary ▴ 30
0
votes
4
replies
445
views
How to plot a image like this.
Genome R plot Cancer
updated 3 months ago by 34k • written 5 months ago by ▴ 10
0
votes
1
reply
594
views
Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?
cancer rawcounts(RNAseq) breakpoint downloaddata
updated 5 months ago by 77k • written 5 months ago by ★ 1.1k
1
vote
2
replies
1.2k
views
Interpretation of functional prediction pathogenicity scores regarding variants with multiple transcripts in ANNOVAR
annovar pathogenicity cancer CADD
5 months ago by svlachavas ▴ 750
0
votes
0
replies
222
views
Job: Postdoc in computational cancer biology at IEO, Milan, Italy
ppi cancer networks genomics
5 months ago by martin.schaefer ▴ 10
0
votes
0
replies
300
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School UK
uk cancer postdoc
5 months ago by dan.brewer ▴ 120
4
votes
2
replies
626
views
Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer Genome Atlas)
ENCODE mutation maf TCGA cancer
6 months ago by peter ▴ 10
14
votes
10
replies
5.2k
views
Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
RNA-Seq cancer variant calling gene fusion Tool
6 months ago by uhrigs ▴ 140
0
votes
0
replies
549
views
Job: PhD student in precision cancer bioinformatics | Charite, Berlin, Germany
cancer ngs berlin clinical precision Job
6 months ago by naveed.ishaque • 0
0
votes
0
replies
228
views
A database of cancer super-enhancers
ChIP-Seq super-enhancers cancer
6 months ago by MoHallal • 0
14
votes
2
replies
1.2k
views
Tutorial: Methylation Analysis Tutorial in R_part2
methylation RNA-Seq R cancer Tutorial
6 months ago by Hamid Ghaedi ★ 1.7k
0
votes
0
replies
168
views
Looking for VCF files and clinical data for cancer (prostate or cll or breast)
vcf cancer somatic mutations access to data
6 months ago by ansakim20 • 0
0
votes
0
replies
163
views
Finding mutational burden in TCGA dataset
genome python UTR tcga cancer
6 months ago by Jamie Watson • 0
0
votes
1
reply
216
views
METABRIC sample IDs
METABRIC sample cancer mRNA ID
updated 7 weeks ago by ★ 1.4k • written 7 months ago by • 0
2
votes
4
replies
227
views
where to find cancer data
SNP cancer next-gen data fastq
updated 7 months ago by 53k • written 7 months ago by • 0
2
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3
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473
views
VEP for cancer annotation using COSMIC
VEP COSMIC Cancer
updated 7 months ago by 22k • written 7 months ago by ▴ 40
0
votes
5
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336
views
development of NGS pipeline for variant calling in lung cancer
cancer NGS pipeline snp next-gen
updated 7 months ago by ▴ 30 • written 7 months ago by • 0
0
votes
0
replies
222
views
Calling UTRs in TCGA dataset
TCGA cancer UTR ORF
7 months ago by Jamie Watson • 0
6
votes
11
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5.8k
views
9 follow
RNAseq data and PAM50 method
rna-seq PAM50 Breast Cancer unsupervised
updated 8 months ago by 20 • written 7.3 years ago by ▴ 20
25
votes
23
replies
11k
views
14 follow
Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
cancer exome-sequencing copynumber
updated 8 months ago by • 0 • written 7.6 years ago by ★ 3.0k
16
votes
2
replies
5.7k
views
Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
python R cancer genetics sequencing Job
8 months ago by Cyriac Kandoth 5.7k
8
votes
4
replies
370
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis cancer driver genes
updated 8 months ago by 77k • written 8 months ago by ▴ 210
0
votes
0
replies
290
views
Correcting variant allele fraction using tumor purity (experimentally measured)
variant calling sequencing cancer SNP next-gen
9 months ago by Luca Beltrame ▴ 220
0
votes
0
replies
577
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
cancer bioinformatics postdoc biomarkers Job
9 months ago by dan.brewer ▴ 120
50 results • Page 1 of 1
Recent Votes
Kozak sequence strength calculation
How to download raw sequence data from GEO/SRA
How to download raw sequence data from GEO/SRA
Answer: Bedtools: Merging Many Bed Files
Comment: A guide to modern genome assembly
Answer: Bedtools: Merging Many Bed Files
Comment: A guide to modern genome assembly
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Recent Replies
Comment: Kozak sequence strength calculation by Alec • 0
Hello, A little late, but this website may be what you are looking for: [https://www.tispredictor.com/tis][1] It calculates Kozak sequen…
Comment: limma+voom flips the sign of the effect from CPM? by Gordon Smyth ★ 3.3k
When you ask a questions on Biostars it is essential to show the code you used, otherwise it's impossible to us to figure out what the prob…
Comment: limma+voom flips the sign of the effect from CPM? by Gordon Smyth ★ 3.3k
Cross-posted to Bioconductor https://support.bioconductor.org/p/9139613/
Answer: How to execute one command on all files within a directory by asalimih ▴ 30
Here is a bash solution. I assume the `Assembly` in your example is actually the output file so I replaced it according to your explanation…
Comment: How to execute one command on all files within a directory by swbarnes2 11k
What have you tried?
Comment: How To Download .Gbk Files From Ncbi Website by Istvan Albert 89k
when the GB file contains more data the format has to be `gbwithparts` otherwise just a skeleton file with top level annotation will be ret…
Comment: A guide to modern genome assembly by lieven.sterck 12k
absolutely. let's call it a draw then ;)
Comment: A guide to modern genome assembly by Michael Dondrup 49k
True, but some plants have other "problems", like hybrid polyploidy (like wheat, where this was itself an interesting feature to analyze). …
Answer: Bedtools: Merging Many Bed Files by Alex Reynolds 33k
Here's another option to merge `N` files at once: $ bedops --merge fileA.bed fileB.bed ... fileN.bed > answer.bed If you have uns…
Answer: Bedtools: Merging Many Bed Files by dariober 12k
> I got that output after a pipeline where I used cat to combine the sorted bed files The input to mergeBed shoud be sorted so I think …
Comment: A guide to modern genome assembly by lieven.sterck 12k
all very true. Been, sideways, part of an insect genome project and a very very similar strategy was applied in that one as well indeed. …
Comment: Is there a way to find the GWAS traits to a gene programmatically? by eyb ▴ 220
I have the same problem. Did you manage to solve it?
Comment: A guide to modern genome assembly by Michael Dondrup 49k
Like eggs? That would make it way too easy :) But even eggs are not all equal, especially when we need more than one to get enough DNA. Al…
Comment: Bedtools: Merging Many Bed Files by J • 0
As an addendum, I got that output after a pipeline where I used cat to combine the sorted bed files, then attempted mergeBed
Comment: A guide to modern genome assembly by lieven.sterck 12k
> What helps against highly heterozygous genome, btw? High levels of > inbreeding over many, many generations Could also consider sequenci…
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