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Showing top results for tag: Genomics • reset
2
votes
2
replies
184
views
Workshop for population genomics
bioinformatics Genomics
updated 2 days ago by ▴ 10 • written 2 days ago by • 0
2
votes
2
replies
144
views
Interpretting phastConsElements from USCS Table Browser
ucsc conservation genomics phastcons bioinformatics
updated 5 days ago by ▴ 510 • written 5 days ago by ▴ 620
0
votes
0
replies
60
views
Best tools for calling structural variants from 2 assemblies?
genetics variants genomics comparative population evolution
8 days ago by changxu.fan ▴ 50
6
votes
4
replies
367
views
Convert UCSC isoform ID to Ensembl transcript ID
Rna-seq Ensembl Genomics assembly UCSC
updated 10 days ago by • 0 • written 3 months ago by ▴ 20
0
votes
0
replies
187
views
Job: BIOINFORMATICIAN II
RNA-seq Genomics Job Transcriptomics
11 days ago by lianov ▴ 10
1
vote
1
reply
118
views
Refseq annotation for processed/unprocessed Pseudogenes
refseq pseudogene annotation genomics
updated 13 days ago by 107k • written 13 days ago by ▴ 30
0
votes
0
replies
57
views
SURVIVOR merge function usage
bioinformatics genomics NGS genome
13 days ago by dlekrud456 • 0
0
votes
0
replies
77
views
News: Online training - Genomic Prediction
Genomics
18 days ago by carlopecoraro2 ★ 2.0k
1
vote
2
replies
151
views
Edit vcf file 0|0 to 0
linux vcf genomics edit
19 days ago by zoubda • 0
0
votes
0
replies
66
views
What is the difference between GERP S and GERP N?
annotation GERP pathogenic genomics
20 days ago by DN99 • 0
2
votes
2
replies
190
views
How to rename fastqs for cell ranger ?
cell genomics count ranger fastq 10x
26 days ago by Meghamsh • 0
0
votes
0
replies
73
views
Comparing Two Different Groups
genomics
27 days ago by joe_genome ▴ 10
0
votes
6
replies
400
views
Mapping unique GO term description given a specific GO id
genomics
updated 24 days ago by ★ 2.5k • written 4 weeks ago by • 0
1
vote
4
replies
261
views
Extract fastq reads by lists of sequences
NGS genomics genome bioinformatics fastq
27 days ago by dlekrud456 • 0
2
votes
4
replies
303
views
pseudogenes and their parent gene common regions
calling pseudogene genomics variant
29 days ago by asalimih ▴ 30
1
vote
1
reply
165
views
Filter dosage file by list of SNP IDs
dosage snp genomics
4 weeks ago by James ▴ 10
1
vote
0
replies
256
views
Job: Hiring: Computational Biology/Bioinformatics at Chinook Therapeutics (Seattle, Vancouver or Remote)
Bioinformatics RNASeq Genomics Computational_Biology
28 days ago by eolson ▴ 10
3
votes
4
replies
274
views
isolate adapter contamination reads from fastq file using python
regex bioinformatics python genomics
updated 4 weeks ago by 17k • written 4 weeks ago by ▴ 70
0
votes
0
replies
133
views
Job: HIRING: Data Brokers and Data Broker Supervisor at UCSC
genomics bioinformatics UC data DNA
4 weeks ago by genomicshr ▴ 30
0
votes
0
replies
63
views
How to access NCBI .bbs files
genomics ncbi
4 weeks ago by michelle.n • 0
0
votes
0
replies
345
views
Job: 11 funded PhD positions IRTG 2403 "Dissecting and Reengineering the Regulatory Genome", Humboldt-Universität zu Berlin, Germany
Machine_Learning Genomics Computational_Biology Bioinformatics Gene_Regulation
4 weeks ago by martin.kircher • 0
2
votes
2
replies
261
views
Forum: Internship in research
python genomics
5 weeks ago by vaishnavi ▴ 70
1
vote
2
replies
242
views
What is the best software for "phasing" in human population genomics with trio family pedigree?
Trio Phasing genomics pedigree SNP
updated 5 weeks ago by ▴ 600 • written 5 weeks ago by • 0
40
votes
7
replies
443
views
9 follow
linux for genomics
linux genomics
updated 5 weeks ago by ▴ 310 • written 5 weeks ago by ▴ 70
1
vote
4
replies
332
views
Error when Phasing with Beagle 5.2
genotypes vcf genomics Beagle phase
4 weeks ago by mglasena ▴ 30
9
votes
7
replies
1.2k
views
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
4 weeks ago by joe ▴ 230
0
votes
0
replies
129
views
What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression size genomics effect genetics beta
6 weeks ago by jon.klonowski ▴ 80
0
votes
1
reply
210
views
News: Databricks Runtime for Genomics (Deprecated)
Runtime Databricks Genomics
updated 6 weeks ago by 107k • written 6 weeks ago by ★ 8.8k
1
vote
0
replies
310
views
Job: Genomics Data Scientist
Data Genomics Scientist
6 weeks ago by BerkeleyLab ▴ 40
0
votes
0
replies
173
views
Job: Scientific Officer: Human genomics and translational data (ELIXIR/EMBL-EBI, Cambridge, UK)
bioinformatics human genomics
6 weeks ago by Erin Haskell | ELIXIR ▴ 460
0
votes
0
replies
175
views
Job: Programme Manager: Human genomics and translational data (ELIXIR/EMBL-EBI, Cambridge, UK)
Cambridge human EBI genomics
6 weeks ago by Erin Haskell | ELIXIR ▴ 460
0
votes
0
replies
164
views
Job: Postdoc position in phylogenomics and evolution of beetles
evolution bioinformatics genomics beetles
6 weeks ago by zyladagmara • 0
0
votes
0
replies
123
views
Is there any way to customise the colour codes for multiple-sequence alignment (MSA)?
alignment Python genomics R phylogeny
4 weeks ago by Kumar ▴ 50
3
votes
5
replies
346
views
Where do I get a WES dataset of size <1GB
WGS WES genomics
updated 6 weeks ago by ★ 2.5k • written 6 weeks ago by • 0
1
vote
2
replies
188
views
Differential gene expression: remove effect of latent variables from log fold change
Seurat scRNA-seq genomics
7 weeks ago by danielcgingerich • 0
0
votes
2
replies
147
views
Map Entire Directory of Paired-End Reads at Once
bwa bowtie genomics assembly reads
updated 7 weeks ago by 33k • written 7 weeks ago by • 0
0
votes
3
replies
295
views
fastq-dump: command not found, what is wrong?
assembly toolkit genomics SRA
updated 7 weeks ago by ▴ 10 • written 7 weeks ago by • 0
0
votes
0
replies
183
views
Job: Job Opening: Bioinformatician and Sr. Bioinformatician at UCSC's Genomics Institute
bioinformatics genomics
8 weeks ago by genomicshr ▴ 30
0
votes
2
replies
268
views
How can I find matches between two csv files according to multiple columns using awk/bash?
awk genomics bash
updated 8 weeks ago by 17k • written 8 weeks ago by • 0
0
votes
0
replies
269
views
Job: Bioinformatician (f/m/d)
Hamburg genomics Germany
8 weeks ago by gasta88 ▴ 40
0
votes
0
replies
329
views
Job: Software Engineer / Software Developer (f / m / d) for software in the context of DNA sequencing-based cancer diagnostics
Hamburg genomics Germany
8 weeks ago by gasta88 ▴ 40
0
votes
0
replies
189
views
Job: Senior Postdoctoral Research Fellow at Big Data Institute, University of Oxford
big postdoc genomics data
8 weeks ago by Shicheng Guo ★ 8.8k
0
votes
0
replies
182
views
Job: Postdoctoral Fellowship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
9 weeks ago by waihungh ▴ 20
0
votes
0
replies
238
views
Job: PhD Scholarship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
9 weeks ago by waihungh ▴ 20
1
vote
3
replies
225
views
Finding homologs in BLASTN
genomics comparative
updated 9 weeks ago by 107k • written 9 weeks ago by • 0
0
votes
0
replies
139
views
Need help interpreting CoGe SynMap result
bioinformatics tool genomics genome
9 weeks ago by Lucas Peres ▴ 80
0
votes
0
replies
105
views
Tool: Manticore: a software to extract the intermixed regions of subgenomes in hybrid species
mapping hybrid subgenome genomics sequencing
9 weeks ago by Macspider ★ 3.4k
1
vote
2
replies
216
views
snpEff ERROR_CHROMOSOME_NOT_FOUND GRCh37.75 genome
annotaion vcf genomics variant snpEff
10 weeks ago by rosmakar ▴ 10
0
votes
0
replies
282
views
Job: Senior Scientist of Computational Genomics in Johnson & Johnson
analysis genetics genomics
10 weeks ago by Shicheng Guo ★ 8.8k
0
votes
1
reply
142
views
P-value calculation for DNA motifs
python Genomics DNA R
updated 10 weeks ago by ★ 13k • written 10 weeks ago by ▴ 80
50 results • Page 1 of 1
Recent Votes
Chip seq remove the genes which has very low enrichment
Functional enrichment analysis, visual representation with barplot: error: argument 2 matches multiple formal arguments
Merging two files based on matched column and print only the matched lines
What to do with genes that appear as NA but have statistics
Comment: How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to
Should ENSEMBL up- and downstream variants be classified as genic or non genic?
A: Should ENSEMBL up- and downstream variants be classified as genic or non genic?
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Teacher to Gordon Smyth ★ 3.4k
Recent Replies
Comment: Microarray analysis in R - target.txt,file,Sample info by bioinformatics • 0
I just have another question, is Microarray.MSCs equivalent to the data file mydataRAW in the workflow?
Comment: Microarray analysis in R - target.txt,file,Sample info by bioinformatics • 0
Also it removed the V1,V2,V3,V4 etc. but it still comes up with Error in Math.data.frame(Microarray.MSCs) : non-numeric-alike variable(s) i…
Comment: Microarray analysis in R - target.txt,file,Sample info by bioinformatics • 0
Thankyou for your help. I'm not sure what you mean. Do I create a seperate table (text file) using ProbeName and GeneSymbol columns?
Comment: genBlastA output file .gblast error by washion215 • 0
Hey! you can download it with `wget http://genome.sfu.ca/genblast/latest/genblasta_v1.0.4_linux_x86_64`. Then `chmod 755 genblasta_v1.0.4_l…
Comment: genBlastA output file .gblast error by washion215 • 0
Hey, I also met the same problem, but I found it is not the empty file, I filter the output file with `grep '^MY_FASTA_ID' output_file | le…
Comment: How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to by mrj ▴ 50
Thank you so much!
Answer: Repeated measures design matrix controlling for covariates age and sex by Gordon Smyth ★ 3.4k
> I want to account for sex and age effect Paired analyses already completely control for all subject-specific characteristics including a…
Comment: orient flipped reads - adapter ligation by GenoMax 107k
If you had noticed I had said `selected.fq` to only choose reads you want to RC. You can get those reads by using another tool `bbduk.sh` i…
Comment: Weird error from BWA and BOWTIE2 by SkyL ▴ 10
thanks, we run `fastQValidator` on the simulator data and found that there are a lot `repeated sequenced identifier`: ``` ERROR on Line 19…
Comment: orient flipped reads - adapter ligation by PhilippFW • 0
Thanks for your quick reply, GenoMax. Your solution would flip all reads, correct? How can I only select those that are in the wrong ori…
Comment: orient flipped reads - adapter ligation by GenoMax 107k
> How do I flip/reverse complement reads which have the 'wrong' > orientation Using `reformat.sh` from [BBMap suite][1]: reformat.sh …
Comment: Beginner problem: install python3.7.12 but py_available() still return FALSE by Sashu • 0
I see! Thanks for your reminder!
Comment: Beginner problem: install python3.7.12 but py_available() still return FALSE by Sashu • 0
I finally understand what you mean! I paid too much attention on the second sentence but ignored the error information. Thanks a lot!
Comment: Low mapping rate of 10X scATAC-seq reads by GenoMax 107k
Which aligner are you using? I suggest that you take a few data reads and try doing a blast at NCBI to verify that something untoward has n…
Comment: Splice aware vs splice unaware aligners? by lieven.sterck 12k
might be indeed, though I think that is rather a side-effect/consequence of the former rather than a 'goal' . Most of the times (and this …
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