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Showing top results for tag: Genomics • reset
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67
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Job: Senior Postdoctoral Research Fellow at Big Data Institute, University of Oxford
postdoc big genomics data
updated 1 day ago by 104k • written 1 day ago by ★ 8.7k
0
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0
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57
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Job: Postdoctoral Fellowship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
1 day ago by waihungh ▴ 20
0
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0
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70
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Job: PhD Scholarship in Bioinformatics and Liver Cancer Genomics
biopsy NGS genomics Liquid Cancer Bioinformatics sequencing Single-cell
1 day ago by waihungh ▴ 20
1
vote
3
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141
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Finding homologs in BLASTN
genomics comparative
updated 6 days ago by 104k • written 6 days ago by • 0
0
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0
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90
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Need help interpreting CoGe SynMap result
bioinformatics tool genomics genome
6 days ago by Lucas Peres ▴ 80
0
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52
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Tool: Manticore: a software to extract the intermixed regions of subgenomes in hybrid species
mapping hybrid subgenome genomics sequencing
7 days ago by Macspider ★ 3.4k
1
vote
2
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144
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snpEff ERROR_CHROMOSOME_NOT_FOUND GRCh37.75 genome
annotaion vcf genomics variant snpEff
8 days ago by makarenko100 ▴ 10
0
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0
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156
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Job: Senior Scientist of Computational Genomics in Johnson & Johnson
analysis genetics genomics
11 days ago by Shicheng Guo ★ 8.7k
0
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1
reply
93
views
P-value calculation for DNA motifs
python Genomics DNA R
updated 12 days ago by ★ 12k • written 12 days ago by ▴ 80
2
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0
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101
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Job: Bioinformatics Positions at the Penn Epigenetics Institute
epigenetics UPENN imaging genomics bioinformatics
13 days ago by vahedilab.jobs ▴ 40
0
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0
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139
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Job: (another) Fully-funded PhD scholarship on functional and evolutionary genomics [Apply by 8/15]
statistical genomics transcriptome bioinformatics evolution
14 days ago by Mari • 0
0
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3
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160
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Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 18 days ago by ▴ 540 • written 19 days ago by ▴ 490
1
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0
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224
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Job: Computational research positions, incl. postdoctoral scholars (recommender systems in genomics)
recommender Seattle visualization genomics
24 days ago by meuleman ▴ 10
7
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7
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5.9k
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Mummer To Viewable Alignment Format (Fasta Or Aln...)
genomics alignment
updated 24 days ago by • 0 • written 9.9 years ago by ★ 2.3k
0
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1
reply
97
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Rarefy metagenomic adatasets for taxonomic profiling using MetaPhlAn3
metagenomics Rarefy MetaPhaln3 Genomics
updated 25 days ago by ★ 1.6k • written 25 days ago by • 0
0
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1
reply
195
views
Job: Bioinformatics Scientist in the department of Research Technology at Tufts University
scRNASeq Python R genomics
updated 26 days ago by ▴ 220 • written 27 days ago by • 0
2
votes
1
reply
88
views
How could I calculate r2 values between a list of SNPs with PLINK?
genomics plink snp r2
updated 27 days ago by 8.2k • written 27 days ago by ▴ 20
0
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0
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68
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Removing paralogs from multiple sequence alignments
sequencing BAM genomics comparative paralog
27 days ago by mglasena ▴ 30
0
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0
replies
64
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Split Y-Axis of a manhattan plot in qqman (using R)
manhattan R genomics
28 days ago by tacrolimus ▴ 80
1
vote
8
replies
418
views
unable to impute with beagle after filtering VCF table using vcftools
genomics bioingormatics vcftools beagle
updated 1 day ago by • 0 • written 3 months ago by • 0
0
votes
0
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266
views
Job: Research assistants or postdoctoral fellows in computational biology/bioinformatics (UMass Medical School, Worcester, Massachusetts)
computational sequencing genetics genomics
updated 4 weeks ago by 34k • written 4 weeks ago by ▴ 10
0
votes
2
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157
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microanalysis of zebrafish genome- Comparison between wild type and mutants
genomics
4 weeks ago by aranyak111 • 0
0
votes
1
reply
123
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import metaphlan3 output to Phyloseq
Phyloseq metagenomics MetaPhaln3 Genomics
updated 4 weeks ago by ★ 2.1k • written 5 weeks ago by • 0
7
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2
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179
views
Forum: Course on genome assembly and annotation
genomics
updated 4 weeks ago by 34k • written 5 weeks ago by ▴ 80
0
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0
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105
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microanalysis of zebrafish genome
genomics
5 weeks ago by aranyak111 • 0
0
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0
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118
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Job: HIRING: Senior Software Developer- UC Santa Cruz Genomics Institute
software-developer bioinformatics-engineer genomics
updated 4 weeks ago by 34k • written 6 weeks ago by ▴ 30
0
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0
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156
views
Job: HIRING: Sr Bioinformatician - UC Santa Cruz Genomics Institute
software-engineer pathogen genomics
updated 4 weeks ago by 34k • written 6 weeks ago by ▴ 30
0
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0
replies
267
views
Job: Bioinformatics Job Opening
genomics RNA
updated 4 weeks ago by 34k • written 6 weeks ago by ▴ 30
4
votes
3
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198
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Convert UCSC isoform ID to Ensembl transcript ID
Rna-seq Ensembl Genomics assembly UCSC
updated 5 weeks ago by ★ 1.4k • written 6 weeks ago by • 0
0
votes
7
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430
views
Counting reads with feature counts.
Genomics
6 weeks ago by aranyak111 • 0
0
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3
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284
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Identifying samples from COSMIC/cBioportal etc with only a specific driver mutation
cancer genomics
updated 5 weeks ago by 34k • written 7 weeks ago by • 0
0
votes
2
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159
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Extraction of specific sequences from a FASTA file
Genomics
7 weeks ago by aranyak111 • 0
0
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3
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243
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Very low number of micro RNA reads
Genomics
updated 7 weeks ago by 20k • written 7 weeks ago by • 0
3
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5
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236
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Developing algorithms
Microbial genomics
updated 7 weeks ago by 19k • written 7 weeks ago by • 0
4
votes
5
replies
389
views
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
updated 6 weeks ago by ▴ 20 • written 8 weeks ago by ▴ 200
1
vote
4
replies
178
views
How to generate single sequence from assembled contigs?
assembly contigs genomics
updated 8 weeks ago by ★ 1.3k • written 8 weeks ago by ▴ 10
2
votes
3
replies
218
views
How to Align multiple short reads (NGS data) to a short (~200bp) reference?
genomics NGS CRISPR genotyping
updated 5 weeks ago by 34k • written 8 weeks ago by ▴ 10
0
votes
1
reply
240
views
Job: Bioinformatician, Stem Cell Translational Lab, Div. of Preclinical Innovation, NCATS/NIH, Rockville, MD
transcriptomics scRNASeq genomics
updated 4 weeks ago by 34k • written 8 weeks ago by • 0
4
votes
6
replies
300
views
Cons of Smith-Waterman Alignment
Smith-Waterman Genomics Alignment DNA Sequences
updated 9 weeks ago by ★ 2.3k • written 9 weeks ago by ▴ 30
0
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0
replies
135
views
SYS_ERROR when generating CGVIEW image in BRIG
genbank comparative error BRIG genomics
9 weeks ago by kira kira • 0
5
votes
4
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288
views
Forum: Detailed Textbooks for bioinformatics and computational biology
biomedical Computational genomics
updated 4 weeks ago by 34k • written 9 weeks ago by • 0
0
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0
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139
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Job: Now Hiring - Nanopore Production Specialist
DNA sequencing genomics
updated 28 days ago by 34k • written 9 weeks ago by ▴ 30
0
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2
replies
133
views
Looking for a user-friendly comparative genomics program
comparative genomics
updated 9 weeks ago by 104k • written 9 weeks ago by • 0
2
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3
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233
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Deleterious or Protective? --> CADD score >20 but Odds ratio <1
variant deleteriousness genomics
updated 9 weeks ago by 75k • written 9 weeks ago by ▴ 280
1
vote
2
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173
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Remove sites with heterozygote excess with VCFtools
SNPs genomics VCFTools hetexcess
9 weeks ago by Konstantinos • 0
0
votes
0
replies
89
views
Tool/server for metal ion amino acid binding site prediction ?
proteomics database python genomics
updated 4 weeks ago by 34k • written 9 weeks ago by ▴ 50
0
votes
1
reply
113
views
Microbial Genome Comparison with human genome
Microbiome Genomics Comparison Genes DNA
10 weeks ago by adarshpp1997 • 0
1
vote
1
reply
504
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Job: Research assistant/postdoc in computational biology/bioinformatics (UMass Medical, Worcester, Massachusetts, USA)
computational genetics genomics
updated 28 days ago by 34k • written 11 weeks ago by ▴ 10
0
votes
1
reply
141
views
How to do a pairwise alignment and convert the result to a VCF file?
VCF Genomics mutations
updated 11 weeks ago by 45k • written 11 weeks ago by ▴ 10
0
votes
1
reply
169
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gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
annontation rare genomics variant gnomad
11 weeks ago by jon.klonowski ▴ 80
50 results • Page 1 of 1
Recent Votes
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
Answer: Which method is the best for using in "dba.count" in Diffbind R package
Answer: Which method is the best for using in "dba.count" in Diffbind R package
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Recent Replies
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`? …
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by Woa ★ 2.8k
haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
Comment: inquiry related to snpsift by Kevin Blighe 75k
Interesting, can you confirm the exact version 1.9 build, basically, please show the output of `bcftools --version`? Also, which operating …
Comment: How to filter VEP results of "missing values" by Yiming • 0
The VEP dose not seem to recognize " ". It returned "MSG: ERROR: Error parsing filter string - incomplete parentheses sets?"
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by jgreener ▴ 350
There are efficient and flexible distance calculators available in [BioStructures.jl][1] if you are okay with using Julia. [1]: http…
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Have you tried with a space between the `" "`?
Comment: inquiry related to snpsift by rheab1230 • 0
In my case its not mentioned. -a, --annotations <file> VCF file or tabix-indexed file with annotations: CHR\tPOS[\tVALUE]+ …
Comment: miRAnno—network-based functional microRNA annotation by Shicheng Guo ★ 8.7k
Interesting. It will be great to have a zoom meeting to share your tool.
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