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427 results • Page
1 of 9
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Filtering for tag:
Methylation
•
reset
0
votes
5
replies
226
views
Limma experiment design and making contrasts
limma
methylation
450k
16 hours ago by
kra277
• 0
0
votes
0
replies
43
views
Copy number Variation frequency plot
CNV
EPIC
450k
methylation
4 days ago by
user911111111
• 0
0
votes
0
replies
47
views
How to calculate power to detect mQTLs?
Illumina
power
mqtl
methylation
9 days ago by
anamaria
▴ 140
0
votes
0
replies
71
views
Minfi Blockfinder - cluster file?
methylation
R
13 days ago by
Bio
▴ 10
0
votes
0
replies
105
views
Job:
Postdoc openings @ NYC: Epigenetics / Long Reads / Microbiome
sequencing
RNAseq
microbiome
methylation
7 days ago by
fanggang
▴ 100
1
vote
0
replies
72
views
Bedmethyl
methylation
bedmethyl
20 days ago by
alorsonmethyle
▴ 40
0
votes
0
replies
78
views
How can I download Methylation data for MethylMix package. (unusual error popped)
R
software error
MethylMix
Methylation
26 days ago by
shlokanegi.phe18
• 0
10
votes
2
replies
760
views
Tutorial:
Methylation Analysis Tutorial in R_part2
methylation
RNA-Seq
R
cancer
Tutorial
4 weeks ago by
Hamid Ghaedi
★ 1.3k
0
votes
0
replies
154
views
Job:
Postdoctoral Research Fellow position in Molecular Biology
RNA
nanopore sequencing
biology
methylation
Job
4 weeks ago by
adnan.niazi
• 0
0
votes
2
replies
138
views
Violation of Independence test for differential methylation (DM)
methylation
differential methylation
4 weeks ago by
CY
▴ 570
13
votes
0
replies
2.8k
views
Tutorial:
Methylation Analysis Tutorial in R_part1
methylation
cancer
R
Tutorial
5 weeks ago by
Hamid Ghaedi
★ 1.3k
0
votes
0
replies
148
views
TCGA methylation data analysis. beta values to differentially regulated CpGs
methylation
beta values
DMP
8 weeks ago by
english.server
▴ 230
1
vote
5
replies
280
views
RnBeads error running rnb.run.dj()
rnbeads
methylation
bioinformatics
ngs
help
updated 8 weeks ago by
fmueller
▴ 30 • written 9 weeks ago by
miky.zo
▴ 60
0
votes
0
replies
317
views
Surrogate variable, celltype composition correction and overfitting in DNA methylation data
array
sva
limma
methylation
11 weeks ago by
Papyrus
▴ 720
0
votes
0
replies
214
views
News:
DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epgenetics
Bisulfite
Methylation
News
12 weeks ago by
David Langenberger
9.6k
0
votes
0
replies
275
views
Is there any method to compare t-SNE plot drawn by same samples and different standard?
EPIC
t-sne
Methylation array
Methylation
3 months ago by
kwanghoon
▴ 20
0
votes
3
replies
155
views
DNA Methylation file read
R
methylation
updated 3 months ago by
rpolicastro
5.1k • written 3 months ago by
navienuk2
• 0
0
votes
1
reply
188
views
Genomic position to genomic feature
genome
DMR
Methylation
3 months ago by
irfanwustl
▴ 20
0
votes
0
replies
151
views
Minfi's combineArrays returns intersect
minfi
methylation
450K
EPIC
ChAMP
3 months ago by
MoltenLight
• 0
0
votes
0
replies
160
views
Illumina HumanMethylation - Exclusion Criteria for Poor Quality Samples
methylation
Infinium arrays
EPIC
450K
minfi
3 months ago by
MoltenLight
• 0
1
vote
2
replies
2.0k
views
ERRBS Methylation data analysis
methylation
ERRBS
Bisulfite
next-gen
homer
updated 3 months ago by
Biostar
20 • written 5.5 years ago by
madkitty
▴ 620
0
votes
0
replies
169
views
Beta values of methylation data: mean or median? how to create an event?
R
TCGA
Methylation
illumina
4 months ago by
deathmagnetic20
▴ 10
0
votes
1
reply
248
views
Error using gometh from missMethyl
methylation
missmethyl
gometh
updated 4 months ago by
sara.pischedda01
• 0 • written 5 months ago by
olivia.grant
• 0
0
votes
2
replies
391
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 4 months ago by
aconga
• 0 • written 6 months ago by
pixie@bioinfo
★ 1.4k
1
vote
1
reply
237
views
Bismark methylation extract result interpretation
WGBS
bismark
methylation
CpG
updated 5 months ago by
Ventrilocus
▴ 80 • written 5 months ago by
devarora
▴ 420
1
vote
1
reply
215
views
how to extract methylation level of certain genomic regions?
methylation
bsmap
CpG
wgbs
5 months ago by
hksk2
▴ 10
0
votes
5
replies
187
views
Missing chromosomal Information after sorting and deduplication step
next-gen
assembly
sequence
methylation
5 months ago by
devarora
▴ 420
0
votes
0
replies
206
views
Illumina HumanMethylation 450k dataset normalization
R
methylation
data normalization
5 months ago by
aggelos529
• 0
0
votes
2
replies
1.2k
views
RnBeads- GenomicFeatures is not available for R3.2.3
R
450k
methylation
RnBeads
R3.2.3
updated 5 months ago by
Biostar
20 • written 4.9 years ago by
mackin-sj1
• 0
0
votes
0
replies
198
views
Infer phylogeny from continuous, segmented CNV data from methylation array
methylation
R
conumee
copy number
phylogeny
5 months ago by
Fynn
• 0
0
votes
1
reply
169
views
Replicates in Bisulfite data
Bisulfite-Seq
Methylation
updated 6 months ago by
dariober
12k • written 6 months ago by
chaudharyc61
▴ 50
0
votes
0
replies
166
views
Epigenome characterization with PacBio. Any experience ?
PacBio
epigenome
methylation
6 months ago by
Antonio R. Franco
★ 4.6k
0
votes
0
replies
206
views
RnBeads Greedycut command ???
greedycut
rnbeads
array
methylation
6 months ago by
Ankit
▴ 170
1
vote
0
replies
221
views
Which read should be considered to calculate methylation value?
Methylation
BISCUIT
bam
updated 6 months ago by
Biostar
20 • written 6 months ago by
irfanwustl
▴ 20
0
votes
0
replies
213
views
Is it right to use a low amount of bumphunter permutations?
methylation
microarray
DMR
6 months ago by
jeni
▴ 50
0
votes
0
replies
201
views
"C strand" and "G strand" from bisulfite converted bam files
Methylation
bam
Bisulfite
6 months ago by
irfanwustl
▴ 20
3
votes
3
replies
308
views
Treat methylation as binary or continuous signal when detecting DMR?
methylation
6 months ago by
CY
▴ 570
0
votes
1
reply
242
views
Resource for hands on experience
RNA-Seq
Methylation
updated 7 months ago by
ATpoint
47k • written 7 months ago by
irfanwustl
▴ 20
3
votes
1
reply
321
views
Is definition of differentially methylated region (DMR) biologically meaningful?
methylation
DMR
updated 7 months ago by
Hamid Ghaedi
★ 1.3k • written 7 months ago by
CY
▴ 570
0
votes
2
replies
273
views
Defining methylation level of CpG island
methylation
CpG island
7 months ago by
CY
▴ 570
0
votes
2
replies
389
views
Batch correction methylation array datasets. any packages?
methylation
array
batch
7 months ago by
Ankit
▴ 170
7
votes
3
replies
3.9k
views
6 follow
Illumina 450K array manifest for hg38?
illumina
450k
methylation
hg38
updated 7 months ago by
Kevin Blighe
72k • written 6.2 years ago by
rmccloskey
▴ 220
0
votes
9
replies
3.8k
views
how to combine methylation information from different platform?
methylation
RRBS
450K
updated 8 months ago by
SimH
• 0 • written 6.9 years ago by
liu4gre
▴ 210
0
votes
0
replies
222
views
Annotating RRBS methylation data with Illumina cg number
sequencing
Methylation
Annotation
RRBS
8 months ago by
SimH
• 0
1
vote
1
reply
528
views
Surrogate variable analysis: do I need to adjust all SVs?
Surrogate variable analysis
SVA
Methylation
8 months ago by
wwyue127
▴ 10
0
votes
1
reply
353
views
450k CpG strands in hg38
450k
methylation
strand
CpG
hg38
8 months ago by
sophie.m2p
• 0
1
vote
2
replies
1.3k
views
Software suggestion for RRBS DMR (methylation) analysis?
methylation
RRBS
next-gen
updated 8 months ago by
Shalu Jhanwar
▴ 490 • written 3.7 years ago by
Whoknows
▴ 860
4
votes
4
replies
226
views
Variation in proportion of methylated CpGs between human cell types
methylation
cpgs
genome
epigenetics
cell
updated 8 months ago by
Ventrilocus
▴ 80 • written 8 months ago by
Rubal
▴ 340
1
vote
0
replies
268
views
Question: Best Practices/Softwares to filter methylation result of bismark?
methylation
bismark
binomial test
DSS
9 months ago by
weishang
▴ 10
2
votes
3
replies
245
views
Does anyone have experience of methylation alignment tool "Bismark"?
bismark
methylation
ngs
updated 9 months ago by
MatthewP
▴ 910 • written 9 months ago by
kwanghoon
▴ 20
427 results • Page
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I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
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