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606
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156
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69k
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92 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 18 days ago by 170 • written 4.6 years ago by 88k
0
votes
0
replies
109
views
News: Cellosaurus release 38 is available
news cell_line knowledgebase database
9 weeks ago by Amos Bairoch ▴ 110
0
votes
1
reply
379
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
News Workshop RNA-Seq DNA-Seq NGS
11 weeks ago by David Langenberger 9.6k
5
votes
0
replies
321
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia news
12 weeks ago by l_antonova ▴ 50
45
votes
23
replies
4.6k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 3 months ago by 34k • written 3.4 years ago by 99k
0
votes
0
replies
185
views
News: Introduction to Deep Learning
Python DeepLearning MachineLearning News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
202
views
News: Learn how to do modern reproducible data science
Snakemake Nextflow Workflows Bionformatics News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
165
views
News: Noncoding RNA conference (including bioinformatics)
conference bioinformatics RNA noncoding RNA News
4 months ago by rory.johnson ▴ 20
0
votes
0
replies
171
views
News: Spring Bioinformatics Courses @ Edinburgh Genomics
RNA-Seq SNP metagenomics training News
4 months ago by Edinburgh Genomics Training ▴ 40
0
votes
1
reply
411
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome News
updated 4 months ago by ▴ 100 • written 11 months ago by ▴ 150
1
vote
0
replies
225
views
News: Online Training - Analysis of Transposable elements
sequence assembly genome News
4 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
192
views
News: Three x 2day online Python courses
Python News
4 months ago by oliverhooker ▴ 60
0
votes
0
replies
204
views
News: Nine x 2day online R courses
R News
4 months ago by oliverhooker ▴ 60
3
votes
0
replies
202
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl training REST API workshop genome browser News
updated 4 months ago by 104k • written 4 months ago by ▴ 170
5
votes
1
reply
531
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey News
5 months ago by Jeremy Leipzig 20k
0
votes
1
reply
201
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene refseq json News
5 months ago by e.cox ▴ 30
0
votes
0
replies
273
views
News: 3-day ONLINE TRAINING - NEXTFLOW
Nextflow workflow Bioinformatics News
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
227
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
R RNA-Seq SingleCell Bioconductor News
5 months ago by carlopecoraro2 ★ 2.0k
3
votes
0
replies
284
views
News: Online training - Unix and shell scripting for bioinformatics
Unix Bioinformatics scripting Linux News
6 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
231
views
News: Cellosaurus release 37 is available
knowledgebase databases news cell line News
6 months ago by Amos Bairoch ▴ 110
1
vote
1
reply
261
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
assembly genome Nanopore News
6 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
352
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epgenetics Bisulfite Methylation News
6 months ago by David Langenberger 9.6k
1
vote
0
replies
236
views
News: Online training: Advanced Programming in R
R Programming News
6 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
230
views
News: Tutorial on Detecting Structural Variants in ONT data
structural_variants ONT Tutorial News
updated 6 months ago by 52k • written 6 months ago by • 0
0
votes
0
replies
519
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
Nextflow NGS pipeline bioinformatics News
6 months ago by David Langenberger 9.6k
0
votes
0
replies
286
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen SNP genome News
6 months ago by carlopecoraro2 ★ 2.0k
0
votes
1
reply
517
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
RNA-Seq DNA-Seq Workshop News
6 months ago by David Langenberger 9.6k
3
votes
0
replies
342
views
News: ONLINE TRAINING: Environmental Metagenomics
assembly metagenomics nanopore illumina News
6 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
256
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
R Shiny News
7 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
272
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq rna-seq Nanopore News
7 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
290
views
News: Online training - Computational Bayesian methods using brms in R
R Bayesian Statistics News
7 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
271
views
News: ONLINE training - Eukaryotic Metabarcoding
Metabarcoding eDNA News
7 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
296
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
blast ncbi News
7 months ago by GenoMax 104k
2
votes
0
replies
278
views
News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore News
8 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
632
views
News: Online training - Proteomics in R and Bioconductor
Proteomics R Bioconductor News
8 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
264
views
News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq RNA-Seq Workshop News
8 months ago by David Langenberger 9.6k
0
votes
0
replies
276
views
News: Cellosaurus release 36 is available
cell line news knowledgebase database News
9 months ago by Amos Bairoch ▴ 110
8
votes
1
reply
2.1k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
biostar News
written 8.0 years ago by 11k
0
votes
0
replies
335
views
News: Online Training: Epigenomics
RNA-Seq ChIP-Seq next-gen News
9 months ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
388
views
News: UniProt survey: Tell us what protein information is important to you
uniprot proteome genome database News
9 months ago by Elisabeth Gasteiger ★ 1.9k
0
votes
0
replies
245
views
News: dbSNP/ALFA Video and Live Event (October 29, 2020 at 12noon EST)
SNP genome News
9 months ago by lonphan ▴ 50
1
vote
0
replies
430
views
News: NCBI Web BLAST now offers RefSeq Select databases for faster searches and better results
blast News
9 months ago by GenoMax 104k
0
votes
0
replies
392
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS IN HUMANS, PLANTS AND ANIMALS
sequencing genome News
9 months ago by carlopecoraro2 ★ 2.0k
2
votes
0
replies
305
views
News: Get Ensembl training, virtually
ensembl training online News
9 months ago by Emily_Ensembl 22k
0
votes
0
replies
539
views
News: Online Training - Nanopore direct RNA Sequencing
RNA-Seq rna-seq Nanopore News
9 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
214
views
News: rPHG v0.1.11 Updates
rphg News
9 months ago by Brandon M. • 0
1
vote
0
replies
301
views
News: Interested in Genome Assembly using long-reads?
assembly Assembly PacBio Nanopore News
9 months ago by carlopecoraro2 ★ 2.0k
1
vote
0
replies
279
views
News: Making molecular data FAIR for ML
fair molecular data ml News
9 months ago by Elucidata ▴ 240
4
votes
2
replies
3.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
genescf kegg GO annotation GeneSCF News
9 months ago by EagleEye 7.0k
0
votes
0
replies
302
views
News: Training - Genome Assembly with Pacbio and HIC data
assembly Assembly News
9 months ago by carlopecoraro2 ★ 2.0k
50 results • Page 1 of 1
Recent Votes
Answer: Many TLENs in a SAM file seem much too big
C: Is indel realigning necessary for INDEL discovery?
A: Is indel realigning necessary for INDEL discovery?
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
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Recent Replies
Comment: inquiry related to snpsift by Kevin Blighe 75k
As with many things in bioinformatics, the VCF specification has been misused over the years. Take into account, also, that different progr…
Comment: gene expression of specifics gene by Bioinformatics1 • 0
I have log2(Fold Change) for two groups. Is there any instruction/pipelines I can use for gene expression using log2(Fold Change) in R? M…
Answer: use a list of id to extract sequence from different genomics by Pierre Lindenbaum 137k
[linearize][1] and extract the ID at the same time, sort both list, join, restore the fasta: join -t $'\t' -1 1 -2 1 \ <…
Comment: use a list of id to extract sequence from different genomics by LZH289 • 0
thank you!
Comment: What does betaPrior do in DESEQ? by i.sudbery 12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values" by Yiming • 0
Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics by GenoMax 104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…
Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0
The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
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