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1,188 results • Page
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Filtering for tag:
News
•
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580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 5 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
44
votes
23
replies
4.4k
views
6 follow
Forum:
biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news
chat
forum
Forum
updated 10 days ago by
Ram
32k • written 3.1 years ago by
Devon Ryan
98k
0
votes
0
replies
122
views
News:
Introduction to Deep Learning
Python
DeepLearning
MachineLearning
News
4 weeks ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
106
views
News:
Learn how to do modern reproducible data science
Snakemake
Nextflow
Workflows
Bionformatics
News
4 weeks ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
98
views
News:
Noncoding RNA conference (including bioinformatics)
conference
bioinformatics
RNA
noncoding RNA
News
4 weeks ago by
rory.johnson
▴ 20
0
votes
0
replies
92
views
News:
Spring Bioinformatics Courses @ Edinburgh Genomics
RNA-Seq
SNP
metagenomics
training
News
5 weeks ago by
Edinburgh Genomics Training
▴ 40
0
votes
1
reply
297
views
News:
Results are now Available for the precisionFDA Truth Challenge V2
genome
News
updated 5 weeks ago by
oneillkza
▴ 100 • written 8 months ago by
stephens_sarah
▴ 150
1
vote
0
replies
115
views
News:
Online Training - Analysis of Transposable elements
sequence
assembly
genome
News
6 weeks ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
117
views
News:
Three x 2day online Python courses
Python
News
6 weeks ago by
oliverhooker
▴ 60
0
votes
0
replies
119
views
News:
Nine x 2day online R courses
R
News
6 weeks ago by
oliverhooker
▴ 60
2
votes
0
replies
116
views
News:
Free Ensembl Browser and REST API virtual workshops in March
Ensembl
training
REST API
workshop
genome browser
News
updated 6 weeks ago by
GenoMax
99k • written 6 weeks ago by
Michal @Ensembl
▴ 90
5
votes
1
reply
447
views
News:
Paid opportunity: need microbiome experts for a survey and test of robustness
survey
News
6 weeks ago by
Jeremy Leipzig
20k
0
votes
1
reply
97
views
News:
The NCBI Datasets command-line tool now provides ortholog data
ncbi
gene
refseq
json
News
6 weeks ago by
e.cox
• 0
0
votes
0
replies
144
views
News:
5th Berlin Summer School in NGS Data Analysis 2021 (June 7-11)
RNA-Seq
DNA-Seq
NGS
Workshop
News
7 weeks ago by
David Langenberger
9.6k
0
votes
0
replies
132
views
News:
3-day ONLINE TRAINING - NEXTFLOW
Nextflow
workflow
Bioinformatics
News
8 weeks ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
132
views
News:
ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
R
RNA-Seq
SingleCell
Bioconductor
News
9 weeks ago by
carlopecoraro2
★ 2.0k
3
votes
0
replies
195
views
News:
Online training - Unix and shell scripting for bioinformatics
Unix
Bioinformatics
scripting
Linux
News
11 weeks ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
144
views
News:
Cellosaurus release 37 is available
knowledgebase
databases
news
cell line
News
11 weeks ago by
Amos Bairoch
▴ 110
1
vote
1
reply
156
views
News:
ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
assembly
genome
Nanopore
News
3 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
225
views
News:
DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epgenetics
Bisulfite
Methylation
News
3 months ago by
David Langenberger
9.6k
1
vote
0
replies
162
views
News:
Online training: Advanced Programming in R
R
Programming
News
3 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
151
views
News:
Tutorial on Detecting Structural Variants in ONT data
structural_variants
ONT
Tutorial
News
updated 3 months ago by
ATpoint
48k • written 3 months ago by
stephanie
• 0
0
votes
0
replies
335
views
News:
Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
Nextflow
NGS
pipeline
bioinformatics
News
3 months ago by
David Langenberger
9.6k
0
votes
0
replies
215
views
News:
Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen
SNP
genome
News
3 months ago by
carlopecoraro2
★ 2.0k
0
votes
1
reply
390
views
News:
:: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
RNA-Seq
DNA-Seq
Workshop
News
3 months ago by
David Langenberger
9.6k
3
votes
0
replies
225
views
News:
ONLINE TRAINING: Environmental Metagenomics
assembly
metagenomics
nanopore
illumina
News
3 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
181
views
News:
ONLINE TRAINING - Web Applications Development with R Shiny
R
Shiny
News
3 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
186
views
News:
Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq
rna-seq
Nanopore
News
3 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
214
views
News:
Online training - Computational Bayesian methods using brms in R
R
Bayesian
Statistics
News
4 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
196
views
News:
ONLINE training - Eukaryotic Metabarcoding
Metabarcoding
eDNA
News
4 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
219
views
News:
New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
blast
ncbi
News
4 months ago by
GenoMax
99k
2
votes
0
replies
198
views
News:
Nanopore direct RNA Sequencing course
RNA-Seq
Nanopore
News
4 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
366
views
News:
Online training - Proteomics in R and Bioconductor
Proteomics
R
Bioconductor
News
5 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
197
views
News:
Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq
RNA-Seq
Workshop
News
5 months ago by
David Langenberger
9.6k
0
votes
0
replies
204
views
News:
Cellosaurus release 36 is available
cell line
news
knowledgebase
database
News
5 months ago by
Amos Bairoch
▴ 110
8
votes
1
reply
2.1k
views
News:
An Interesting Article On Bioinformatics Education With Some Press For Biostar
biostar
News
written 7.7 years ago by
Mary
11k
0
votes
0
replies
267
views
News:
Online Training: Epigenomics
RNA-Seq
ChIP-Seq
next-gen
News
5 months ago by
carlopecoraro2
★ 2.0k
1
vote
0
replies
322
views
News:
UniProt survey: Tell us what protein information is important to you
uniprot
proteome
genome
database
News
5 months ago by
Elisabeth Gasteiger
★ 1.9k
0
votes
0
replies
174
views
News:
dbSNP/ALFA Video and Live Event (October 29, 2020 at 12noon EST)
SNP
genome
News
5 months ago by
lonphan
▴ 50
1
vote
0
replies
278
views
News:
NCBI Web BLAST now offers RefSeq Select databases for faster searches and better results
blast
News
5 months ago by
GenoMax
99k
0
votes
0
replies
279
views
News:
Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS IN HUMANS, PLANTS AND ANIMALS
sequencing
genome
News
5 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
226
views
News:
Get Ensembl training, virtually
ensembl
training
online
News
5 months ago by
Emily_Ensembl
22k
0
votes
0
replies
408
views
News:
Online Training - Nanopore direct RNA Sequencing
RNA-Seq
rna-seq
Nanopore
News
6 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
150
views
News:
rPHG v0.1.11 Updates
rphg
News
6 months ago by
Brandon M.
• 0
1
vote
0
replies
233
views
News:
Interested in Genome Assembly using long-reads?
assembly
Assembly
PacBio
Nanopore
News
6 months ago by
carlopecoraro2
★ 2.0k
1
vote
0
replies
217
views
News:
Making molecular data FAIR for ML
fair
molecular data
ml
News
6 months ago by
Elucidata
▴ 240
4
votes
2
replies
3.0k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
genescf
kegg
GO
annotation
GeneSCF
News
6 months ago by
EagleEye
6.8k
0
votes
0
replies
225
views
News:
Training - Genome Assembly with Pacbio and HIC data
assembly
Assembly
News
6 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
646
views
News:
Primer-BLAST can now design primers for a group of related target sequences!
primer-blast
blast
News
6 months ago by
GenoMax
99k
3
votes
1
reply
210
views
News:
Ensembl Pre! site retirement - 31st January 2021
Ensembl
News
6 months ago by
Ben_Ensembl
★ 1.7k
1,188 results • Page
1 of 24
Recent Votes
convert fasta/gb to vcf
Parallel haplotyping
Comment: Meaning letters in TCGA sample barcode field
Comment: Meaning letters in TCGA sample barcode field
Answer: MASURCA error for multiple entries
Comment: Finding how many times a nucleotide appear in the same position
Normalization of ATAC SEQ data for the proper deeptools heatmap
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Comment: big loss after markduplication
by
reza
▴ 250
Now, after deletion of duplicated reads, What is the problem if I want to use this data for the analyzes I mentioned earlier (SNP calling, …
Comment: Download all Bacteria accession list from NCBI
by
GenoMax
99k
AFAIK `datasets` is only meant to work with genome level data. Doing ./datasets download genome taxon 2 will get you information abou…
Comment: Download all Bacteria accession list from NCBI
by
GenoMax
99k
If you have access to `nr` blast database then use `blastdbcmd` which is part of `blast+` package. blastdbcmd -db nr -taxids 2 -outfmt…
Comment: Download all Bacteria accession list from NCBI
by
GenoMax
99k
A lot of records are going to be `WP*` accessions which point to multiple organisms. Something to keep in mind.
Comment: Download all Bacteria accession list from NCBI
by
Kevin Blighe
72k
A related Python script that you could use (search by FASTA title): https://www.biostars.org/p/279584/#279811
Comment: short length amino acids
by
GenoMax
99k
> Can anybody help me how to blast them locally ? You can install `blast` program locally and use that. BLAST Handbook from NCBI: https://…
Comment: Meaning letters in TCGA sample barcode field
by
Kevin Blighe
72k
You are welcome, Sumit.
Comment: Precision of variant calling (INDELs)
by
desouzareis.r
▴ 220
Hi, yes it could. You can compare coverage between them, especially in regions where there are false positive and false negative variants r…
Comment: hello ever one
by
GenoMax
99k
Biostars does not have an `Introductions` tradition. I don't want to delete this post because it may ban your account. Please do not post t…
Comment: Meaning letters in TCGA sample barcode field
by
sumitguptabt
• 0
Thank you so much @kevin I will look into it and update you ASAP. BW Sumit
Comment: MASURCA error for multiple entries
by
Kevin Blighe
72k
Great to hear - thank you.
Comment: Meaning letters in TCGA sample barcode field
by
Kevin Blighe
72k
Hi, you can search for these here: https://portal.gdc.cancer.gov/ They seem to be from Clinical Proteomic Tumor Analysis Consortium (CPTAC)
Comment: GATK 4 and Spark multithreading
by
Victoria
• 0
I am sorry, I didn't realise that wasn't allowed, I have deleted the other post.
Comment: Meaning letters in TCGA sample barcode field
by
sumitguptabt
• 0
@krushnach80 Thank you, dear, These samples are from: cancer types: bronchus and lung, subtype: adenomas and adenocarcinomas. The data is H…
Comment: Meaning letters in TCGA sample barcode field
by
krushnach80
▴ 910
what samples are these which tissue type?
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