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Filtering for tag:
batch
•
reset
0
votes
4
replies
91
views
How to Estimate total variance in, and between RNA-seq datasets?
batch
variance
correction
21 hours ago by
Gabriel
▴ 90
1
vote
1
reply
95
views
KEGG Data retrieval
KEGG
batch
enzymeID
download
updated 5 days ago by
5heikki
9.6k • written 5 days ago by
drishtee_barua
• 0
3
votes
2
replies
127
views
batch renaming FASTQ files
fastq
rename
batch
updated 5 weeks ago by
tshtatland
▴ 80 • written 5 weeks ago by
amitpande74
▴ 20
0
votes
0
replies
323
views
Correct for batch effect in miRNA sequencing using reference sample
RNA-Seq
batch
batch effect
updated 4 months ago by
Biostar
20 • written 17 months ago by
ricmelof
• 0
2
votes
7
replies
482
views
DESeq2: "model matrix is not full rank"
RNA-Seq
DESeq2
design
DESeqDataSet
batch
updated 5 months ago by
swbarnes2
9.7k • written 5 months ago by
biogrin
• 0
0
votes
1
reply
170
views
Is the TaqMan Advanced miRNA Human A and B Cards a single and dual color microarray
limma
microRNA
Taqman miR array cards
Batch
5 months ago by
danielle
• 0
3
votes
5
replies
335
views
Shovill batch assemblies
assembly
shovill
batch
updated 7 months ago by
Ram
32k • written 7 months ago by
jellila
• 0
1
vote
3
replies
1.7k
views
How to fix "ValueError: not enough values to unpack (expected 3, got 1)" when excuting batch analysis?
batch
germline cnv
updated 7 months ago by
GenoMax
99k • written 7 months ago by
mychung3265
• 0
0
votes
2
replies
391
views
Batch correction methylation array datasets. any packages?
methylation
array
batch
7 months ago by
Ankit
▴ 170
1
vote
2
replies
297
views
Rename and move Spades assemblies in batch
batch
bash
spades
updated 7 months ago by
Asaf
8.6k • written 7 months ago by
jellila
• 0
5
votes
9
replies
319
views
Batch correction using DESeq2
RNA-Seq
deseq2
batch
vst
9 months ago by
Rahil
▴ 180
6
votes
13
replies
323
views
Comparison different Datasets without having the FASTQ
bulkRNAseq
batch
correction
R
RPKM
updated 10 months ago by
ATpoint
47k • written 10 months ago by
camillab.
▴ 40
0
votes
0
replies
312
views
Batch effect correction for RNAseq visualization
RNA-Seq
batch
TPM
DEseq
R
11 months ago by
fbleao
• 0
30
votes
12
replies
929
views
Trying to understand the maths behind one Limma function
limma
batch effect
RNA-Seq
batch
updated 11 months ago by
Gordon Smyth
★ 2.5k • written 11 months ago by
Mozart
▴ 260
2
votes
2
replies
623
views
Removing batch effect from GEO database
batch
effect
GEO
updated 16 months ago by
Kevin Blighe
72k • written 16 months ago by
eric.palanques
▴ 10
1
vote
1
reply
1.8k
views
Batch query of ancestral and derived alleles from Ensemble
ancestral allele
SNP
Batch
Ensembl
updated 17 months ago by
Biostar
20 • written 5.2 years ago by
Mr Locuace
▴ 100
4
votes
4
replies
946
views
Advice on Handling Batch Effect in ChIP-seq Experiment
ChIP-Seq
batch effect
sequencing
replicates
batch
19 months ago by
dmj6ab
▴ 10
3
votes
6
replies
3.7k
views
Compute a identity matrix from an alignment - command line approach for batch processing
alignment
identity
batch
updated 19 months ago by
gadget
• 0 • written 4.3 years ago by
fhsantanna
▴ 520
0
votes
1
reply
588
views
Can we use previous estimated ComBat model to correct batch effects for new data?
batch effect
RNA-Seq
microarray
batch
updated 24 months ago by
Kevin Blighe
72k • written 24 months ago by
Min Dai
▴ 160
0
votes
7
replies
820
views
Experimental design RNAseq differential expression
limma
edger
RNA-Seq
batch
differential expression
updated 2.0 years ago by
Biostar
20 • written 2.1 years ago by
Pietro
▴ 110
0
votes
2
replies
3.1k
views
svaseq and combat
combat
sva
batch
effect
updated 2.1 years ago by
liull_hust
• 0 • written 3.9 years ago by
Folder40g
▴ 150
1
vote
0
replies
442
views
Filtering Genes / Batch Correction
RNA-Seq
R
gene
Batch
2.1 years ago by
shinobee
▴ 40
0
votes
6
replies
823
views
batch effect Deseq2 Wald test
RNA-Seq
deseq2
batch
wald test
updated 2.2 years ago by
Devon Ryan
98k • written 2.2 years ago by
mariannapauletto
▴ 40
2
votes
2
replies
1.1k
views
Question regarding Batch removal in single cell RNA seq data
rna-seq
batch
scRNAseq
updated 2.4 years ago by
kristoffer.vittingseerup
★ 3.5k • written 2.4 years ago by
xiaominren0118
• 0
5
votes
2
replies
721
views
Perl/Python script for batch download mRNA sequences for multiple genes
mRNA
batch
updated 2.5 years ago by
Carambakaracho
★ 2.4k • written 2.5 years ago by
Shicheng Guo
★ 8.6k
2
votes
1
reply
3.0k
views
Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer
rna-seq
batch
mixed model
updated 2.6 years ago by
Ram
32k • written 5.1 years ago by
Ekarl2
▴ 120
1
vote
2
replies
1.7k
views
Command line blast atlas
blast atlas
command line
batch
updated 2.7 years ago by
ropolocan
▴ 710 • written 6.1 years ago by
Lee Katz
★ 3.1k
3
votes
1
reply
1.2k
views
Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
ATAC-seq
ChIP-Seq
Illumina
batch
combine
updated 2.8 years ago by
Devon Ryan
98k • written 2.8 years ago by
reskejak
▴ 30
0
votes
4
replies
617
views
How to download FASTA file from psRNAtarget
sequence
FASTA
download
batch
script
2.9 years ago by
ebrahimi.re67
• 0
4
votes
4
replies
1.5k
views
How to specify columns in Uniprot batch query from Uniprot IDs?
uniprot
perl
batch
proteinID
updated 3.1 years ago by
Elisabeth Gasteiger
★ 1.9k • written 3.1 years ago by
Solowars
▴ 60
0
votes
0
replies
849
views
Batch Annotation of Bacterial Gene Clusters
annotation
gene cluster
batch
3.2 years ago by
kayrouz.1
• 0
0
votes
1
reply
1.7k
views
Doubt about batch effect and gene expression analysis
gene expression
batch
limma
updated 3.2 years ago by
Kevin Blighe
72k • written 3.2 years ago by
Picasa
▴ 590
1
vote
2
replies
1.2k
views
Remove batch effect from exome data
batch effect
exome sequencing
batch
exome
NGS
3.5 years ago by
Alternative
▴ 240
7
votes
3
replies
2.7k
views
HHpred batch submission
HHpred
batch
fasta sequence
updated 3.8 years ago by
Joe
19k • written 3.8 years ago by
dhalaa1
▴ 20
0
votes
0
replies
1.3k
views
Workflow for removing batch effect between different studies: meta-analysis
Batch
filtering
microarray
meta-analysis
4.1 years ago by
ali.hassan.nehme
▴ 10
2
votes
3
replies
1.0k
views
Batch conservation analysis
conservation
batch
fasta
genome
4.1 years ago by
chrys
▴ 40
0
votes
2
replies
1.3k
views
Batch correction without changing the data in the first batch
R
microarray
chip
batch
4.2 years ago by
erfan741
▴ 50
0
votes
0
replies
2.8k
views
SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
DESEQ2
SVA
RNA-Seq
Batch
4.4 years ago by
ZheFrench
▴ 320
0
votes
7
replies
8.0k
views
Help creating .sqn file using tbl2asn to submit multiple sequences to Genbank
genbank
tbl2asn
submit
sequence
batch
updated 4.4 years ago by
lizardburns
• 0 • written 7.0 years ago by
jolespin
▴ 130
0
votes
0
replies
2.2k
views
edgeR User Guide batch effect question
edgeR
batch
correlation
4.5 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
3
replies
1.0k
views
Return the Title and URL of ~100 pubmed queries to a flat file
pubmed
batch
query
4.6 years ago by
Vincent Laufer
★ 1.1k
1
vote
3
replies
1.2k
views
Help with preparing sequences for structure prediction
php
itasser
structure prediction
bash
batch
updated 5.1 years ago by
Ram
32k • written 5.1 years ago by
Ali HEBRA
• 0
0
votes
2
replies
2.5k
views
Downloading multiple PDB sequences
PDB
download
batch
updated 5.4 years ago by
Nestor Wendt
▴ 100 • written 5.4 years ago by
Bioaln
▴ 340
6
votes
4
replies
3.1k
views
Correcting batch effects between RPKM datasets?
RPKM
batch
RNA-Seq
DGE
updated 5.7 years ago by
Ying W
★ 4.0k • written 5.7 years ago by
JacobS
▴ 940
6
votes
4
replies
8.7k
views
How to remove batch effect from RNA-seq data?
RNA-Seq
batch
DEseq2
combat
SVA
updated 5.7 years ago by
Michael Love
★ 2.2k • written 5.7 years ago by
alesssia
▴ 570
0
votes
5
replies
1.5k
views
Downloading multiple queries from dbSNP?
SNP
batch
gene
updated 5.8 years ago by
Steven Lakin
★ 1.5k • written 5.8 years ago by
Bioaln
▴ 340
0
votes
0
replies
1.0k
views
YuGene for batch effect normalization. Thoughts?
R
microarray
YuGene
batch
6.1 years ago by
brendan.innes
▴ 10
0
votes
4
replies
2.8k
views
How to estimate batch effect in microarray gene expression data?
gene
data
effect
batch
expression
updated 8 days ago by
Ram
32k • written 6.5 years ago by
chengzhao41
▴ 100
0
votes
0
replies
1.2k
views
Get output for a list of Tracks & List of regions from UCSC table broswer
UCSC
TableBrowser
Batch
Multiple
6.8 years ago by
vlaufer
▴ 280
3
votes
4
replies
2.1k
views
Finding Proteins that have NO known Domains
domain
pfam
batch
protein
sequence
updated 6.8 years ago by
Elisabeth Gasteiger
★ 1.9k • written 6.9 years ago by
ddofer
▴ 30
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