Tutorial:
Mapping Reads With Bwa And Bowtie
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Recent Replies
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i.sudbery
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Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values"
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Yiming
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Thank you so much!
I found an error with my code. And this works:
filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics
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Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br />
<img src="…
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The point that genomes are much larger and more computationally intensive to work with is well-taken.
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Do you understand what the problem is? Have you figured out which step introduced it?
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I have one question related to earlier step where you are formating the .vcf file.
You are removing white space and removing format tags ex…
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Hey Kevin,
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Thank you very much for the great explanation! Really appreciate it!
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Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping
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**Before**
```
$ tree .
.
├── 123_S1_R1_001
│ └── 123_S1_R1_001.fastq.gz
├── 123_S1_R2_001
│ └── 123_S1_R2_001.fastq.gz
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There is no figure to look at that!
Comment: How to filter VEP results of "missing values"
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GenoMax
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Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`?
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Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
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Woa
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haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
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