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50 results • Page
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Showing top results for tag:
bowtie
•
reset
4
votes
7
replies
242
views
How are BWA/bowtie/etc indices built for multiple fasta entries?
index
fasta
mapping
BWA
bowtie
3 days ago by
maxrwjones898
• 0
3
votes
7
replies
1.6k
views
Tophat2 Error gzip pipe broken? zipped file empty?
tophat2
RNA-Seq
gzip
bowtie
alignment
updated 9 days ago by
1589537403
• 0 • written 2.8 years ago by
biogirl04
▴ 10
3
votes
3
replies
122
views
bowtie2 --passthrough, what does it do???
bowtie2
bowtie
27 days ago by
mcrepeau
▴ 10
0
votes
2
replies
121
views
Bowtie: "Floating point exception: 8"
bowtie
alignment
ChIP-Seq
updated 5 weeks ago by
swbarnes2
9.7k • written 5 weeks ago by
Marco
▴ 20
2
votes
6
replies
420
views
Samtools view error:
Samtools view
mapping
bowtie
updated 7 weeks ago by
arrmino
▴ 20 • written 6 months ago by
jaqx008
▴ 90
0
votes
3
replies
239
views
Why is the bowtie option (--no-unal) not present in the help?
Bowtie
alignment
mapping
9 weeks ago by
jaqx008
▴ 90
0
votes
4
replies
2.2k
views
Mapping shorts reads using Bowtie
bowtie
mapping
index
samtools
updated 10 weeks ago by
Biostar
20 • written 5.8 years ago by
bioinfo
▴ 790
1
vote
4
replies
205
views
Merging bowtie output
alignment
bowtie
bowtie2
Assembly
fastq
12 weeks ago by
Sbrillo
• 0
12
votes
8
replies
34k
views
6 follow
Bowtie2 Ubuntu Installation
ubuntu
bowtie
updated 3 months ago by
saritamaurya
• 0 • written 8.6 years ago by
Nasrin
▴ 30
1
vote
6
replies
221
views
Hardware requirements for bowtie2/STAR RNA-seq alignment
RNA-Seq
Illumina
bowtie
bowtie2
STAR
3 months ago by
MatStat
▴ 140
4
votes
7
replies
237
views
Small RNA Alignment
RNA-Seq
smallRNA
bowtie
sequencing
hg38
3 months ago by
Katie __
▴ 10
3
votes
6
replies
209
views
Small RNA seq analysis
RNA-Seq
rna-seq
sequencing
alignment
bowtie
updated 3 months ago by
GenoMax
99k • written 3 months ago by
Katie __
▴ 10
0
votes
3
replies
431
views
bowtie2-align died with signal 2 (INT)
bowtie
bowtie2
updated 4 months ago by
Qiongyi
▴ 110 • written 6 months ago by
mailard
• 0
1
vote
2
replies
1.0k
views
TopHat Error: Couldn't build bowtie index with err = -11
RNA-Seq
tophat
bowtie
updated 4 months ago by
Biostar
20 • written 2.7 years ago by
Sun Jiji
• 0
2
votes
2
replies
173
views
Is there a way to map long fasta reads to short reference sequences?
alignment
rna-seq
bowtie
updated 4 months ago by
karl.stamm
3.9k • written 4 months ago by
Apex92
▴ 50
2
votes
7
replies
245
views
How to map longer reads against a local reference using Bowtie
alignment
bowtie
sequence
mismatch
RNA-Seq
4 months ago by
Apex92
▴ 50
0
votes
0
replies
502
views
HiSat2 vs BowTie2 for mapping miRNA-seq reads
miRNA-Seq
Hisat2
Bowtie
updated 4 months ago by
Biostar
20 • written 9 months ago by
Arindam Ghosh
▴ 360
2
votes
4
replies
262
views
How does bowtie treat a masked 'N' nucleotide?
bowtie
alignment
mask
updated 5 months ago by
ATpoint
48k • written 5 months ago by
johnsonn573
• 0
2
votes
4
replies
246
views
Variant calling from FASTA file
bwa
bowtie
fasta
vcf
5 months ago by
User000
▴ 440
0
votes
0
replies
213
views
Bowtie: Mate files mapping error
ChIP-Seq
Bowtie
Mapping
FASTQ
5 months ago by
priya.dalvi
• 0
0
votes
2
replies
322
views
How does featurecounts deal with the output from Bowtie?
RNA-Seq
Bowtie
featureCounts
updated 6 months ago by
swbarnes2
9.7k • written 6 months ago by
wangdp123
▴ 250
0
votes
2
replies
192
views
Bowtie2 or Bowtie
alignment
bowtie
updated 7 months ago by
lieven.sterck
10k • written 7 months ago by
priscilladraj
▴ 10
2
votes
3
replies
288
views
bowtie2 maximum value of MAPQ
bowtie2
bowtie
updated 8 months ago by
Dave Carlson
▴ 610 • written 8 months ago by
sami
▴ 20
3
votes
5
replies
2.6k
views
How to get the statistics of bowtie alignment into a file?
ChIP-Seq
bowtie
updated 8 months ago by
joshua.theisen
▴ 20 • written 3.0 years ago by
Bella_p
▴ 60
2
votes
3
replies
2.6k
views
Reads That Are Used In De Novo Assemblies That Did Not Map To Contigs
bowtie
assembly
updated 8 months ago by
Jeremy Leipzig
20k • written 8.1 years ago by
lwc628
▴ 220
3
votes
9
replies
10k
views
6 follow
Cuffdiff Says Sam Isn'T Sorted, Although It Handled It Cufflinks
cufflinks
transcription
gene
bowtie
tophat
updated 9 months ago by
1152389206
• 0 • written 9.0 years ago by
Rubellus
▴ 10
0
votes
2
replies
236
views
ChIP-seq technical replicates giving very different percentage mapping score. Is it normal?
ChIP
ChIPseq
bowtie
next-gen
sequencing
10 months ago by
s.singh
▴ 30
0
votes
1
reply
217
views
Can I analyse single-ended WGS data with average readlength 35 bp by MetPhlAn?
metaphlan
wgs
bowtie
readlength
metagenomics
10 months ago by
dpc
▴ 170
3
votes
4
replies
4.9k
views
How to align DNA reads against a database of protein references
bowtie
BWA
alignment
updated 10 months ago by
Biostar
20 • written 5.8 years ago by
bioinfo
▴ 790
0
votes
1
reply
288
views
CUFFLINKS FROM TOPHAT2 STUFF...
cufflinks
tophap
bowtie
updated 10 months ago by
dsull
★ 1.8k • written 10 months ago by
revenge.com
• 0
0
votes
6
replies
344
views
Using Bowtie and SRA mode
bowtie
mapping
10 months ago by
Chvatil
▴ 60
1
vote
3
replies
1.8k
views
Bowtie Accuracy
bowtie
alignment
next-gen
read
updated 10 months ago by
Biostar
20 • written 8.7 years ago by
Arpssss
▴ 40
1
vote
1
reply
237
views
Results generated by Bowtie Aligner
alignment
bowtie
genome
updated 11 months ago by
GenoMax
99k • written 11 months ago by
sindhujamohan92
• 0
0
votes
1
reply
237
views
miRDeep2 Mapper "Bowtie mapping tool not installed"
RNA-Seq
miRNA
bowtie
updated 12 months ago by
Barry Digby
▴ 710 • written 12 months ago by
jammydodger123456
▴ 40
0
votes
0
replies
259
views
Mapping reads to repetitive positions in reference within edit distance and with 1 indel
bbmap
mapping
bowtie
12 months ago by
pawlowac
▴ 70
0
votes
2
replies
268
views
samtools manipulation of bowtie output with suppressed fields
bowtie
samtools
riboseqr
RNA-Seq
riboseq
14 months ago by
Sjannie Lefevre
▴ 30
0
votes
3
replies
287
views
anomalous alignment with bowtie2
bowtie
bowtie2
blast
score
alignment
updated 14 months ago by
GenoMax
99k • written 14 months ago by
mark.rose
▴ 40
3
votes
5
replies
420
views
Issue aligning FASTQ reads to reference genome using bowtie (version 1.2.3)
RNA-Seq
alignment
bowtie
16 months ago by
rnnh
▴ 30
1
vote
3
replies
1.8k
views
Bowtie mapping to genome
genome
mapping
bowtie
updated 16 months ago by
ATpoint
48k • written 3.4 years ago by
Biocode_user
▴ 20
5
votes
7
replies
1.1k
views
Bowtie2 and BWA-MEM giving very different results in metagenomic data
metagenomics
bwa
bowtie
genomics
alignment
16 months ago by
elsoja
▴ 130
6
votes
8
replies
670
views
RPKM with bowtie output
bowtie
rpkm
rna
count
updated 17 months ago by
anoo
• 0 • written 17 months ago by
flogin
▴ 250
0
votes
2
replies
432
views
Can FASTQ header tags be added to SAM file output from bowtie2 ?
bwa
bowtie
alignment
sequencing
next-gen
17 months ago by
manojkumar_bhosale
▴ 70
1
vote
5
replies
352
views
How to view read mapping from Bowtie2, Samtools, etc
samtools
bowtie2
readmapping
bowtie
updated 17 months ago by
Asaf
8.6k • written 17 months ago by
ksipes
• 0
1
vote
2
replies
392
views
Why alignment is invalid if a start/end coordinate is contained within the other read?
methylation
trim galore
bowtie
alignment
18 months ago by
weishang
▴ 10
0
votes
0
replies
318
views
Mapsplice Error: convert sam file to junctions failed
mapsplice
RNA-Seq
alignment
bowtie
18 months ago by
praasu
▴ 40
42
votes
1
reply
31k
views
Tutorial:
Mapping Reads With Bwa And Bowtie
bowtie
bwa
tutorial
Tutorial
updated 18 months ago by
ATpoint
48k • written 9.0 years ago by
MSU course 2011
▴ 510
0
votes
1
reply
3.1k
views
Tophat Error: It Tries To Execute Lines In Fastq Files
tophat
bowtie
error
updated 19 months ago by
Biostar
20 • written 7.7 years ago by
newDNASeqer
▴ 710
4
votes
10
replies
11k
views
Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
tophat
tophat2
bowtie
bowtie2
RNA-seq
updated 19 months ago by
Arnaud Ceol
▴ 850 • written 4.4 years ago by
ashMC
▴ 10
2
votes
2
replies
435
views
Bowtie-build - reference genome issue
RNA-Seq
bowtie
mirbase
updated 20 months ago by
Buffo
★ 1.8k • written 20 months ago by
chupalav
• 0
2
votes
6
replies
733
views
How to index a large fasta file (>100GB) by using bowtie2-build
alignment
genome
bowtie
index
updated 20 months ago by
WouterDeCoster
45k • written 20 months ago by
taylor
• 0
50 results • Page
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Recent Votes
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