Limit : all time
all time today this week this month this year
50 results • Page 1 of 1
Sort: Rank
Rank Views Votes Replies
Showing top results for tag: cancer • reset
0
votes
3
replies
156
views
Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 15 days ago by ▴ 540 • written 16 days ago by ▴ 490
3
votes
2
replies
234
views
Suggestions for an undergraduate research project on glioblastoma
glioblastoma Python Cancer R
updated 11 days ago by 34k • written 21 days ago by ▴ 90
4
votes
4
replies
185
views
What is RAS pathway in cancer cells?
molecule Cancer cell offtopic
updated 5 weeks ago by ★ 2.1k • written 5 weeks ago by • 0
4
votes
3
replies
207
views
which genes causes breast cancer?
Breast Cancer
updated 5 weeks ago by 49k • written 5 weeks ago by • 0
0
votes
3
replies
283
views
Identifying samples from COSMIC/cBioportal etc with only a specific driver mutation
cancer genomics
updated 4 weeks ago by 34k • written 6 weeks ago by • 0
7
votes
3
replies
300
views
How to make a summary plot like below?
cancer classes Oncoplots
updated 7 weeks ago by ▴ 130 • written 7 weeks ago by • 0
0
votes
0
replies
83
views
How to merge the mutations from multiple samples of one patient
MutSig2CV_NC MutSig2CV cancer mutation merge
7 weeks ago by Rongxin ▴ 30
20
votes
1
reply
3.6k
views
Tutorial: Methylation Analysis Tutorial in R_part1
Tutorial cancer methylation R
updated 7 weeks ago by ▴ 30 • written 9 months ago by ★ 1.6k
0
votes
0
replies
197
views
Tool: Help solve the cancer puzzle & benefit your research! SimBioSys PhenoScope for integrative multi-modal and multi-omic data analytics
multi-modal multi-omic breast analytics cancer imaging
8 weeks ago by johnpfeiffer • 0
0
votes
1
reply
168
views
Important genes beyond PAM50 for breast cancer classification
genes cancer deeplearning classification pam50
8 weeks ago by udi • 0
0
votes
0
replies
136
views
Tool: SimBioSys PhenoScope - a cloud-based multi-modal multi-omic data analytics platform for oncology researchers
cloud-based analytic cancer multi-modal multi-omic
8 weeks ago by johnpfeiffer • 0
0
votes
0
replies
147
views
Job: Senior Staff Bioinformatician at the University of Melbourne Centre for Cancer Research
cancer genomics
11 weeks ago by Oliver • 0
1
vote
0
replies
179
views
Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
cancer wehi australia
11 weeks ago by Gordon Smyth ★ 2.8k
3
votes
2
replies
306
views
Is anticancer action of HDAC inhibitors - cancer cells specific or it may cause death to other cell types ?
cancer
updated 3 months ago by 24k • written 3 months ago by ▴ 20
0
votes
0
replies
200
views
Job: Group Leader Computational Cancer Biology - VIB-KU Leuven, Belgium
vib groupleader cancer biology computational
3 months ago by leen.notebaert • 0
3
votes
2
replies
330
views
Contradiction in Harzard ratio and Log fold change
Foldchange Cancer HR HarzardRatio LogFC
3 months ago by Mran ▴ 30
0
votes
4
replies
387
views
How to plot a image like this.
Genome R plot Cancer
updated 4 weeks ago by 34k • written 3 months ago by • 0
0
votes
1
reply
552
views
Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?
cancer rawcounts(RNAseq) breakpoint downloaddata
updated 3 months ago by 75k • written 4 months ago by ★ 1.1k
1
vote
2
replies
1.1k
views
Interpretation of functional prediction pathogenicity scores regarding variants with multiple transcripts in ANNOVAR
annovar pathogenicity cancer CADD
3 months ago by svlachavas ▴ 740
0
votes
0
replies
178
views
Job: Postdoc in computational cancer biology at IEO, Milan, Italy
ppi cancer networks genomics
3 months ago by martin.schaefer ▴ 10
0
votes
0
replies
261
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School UK
uk cancer postdoc
4 months ago by dan.brewer ▴ 120
4
votes
2
replies
532
views
Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer Genome Atlas)
ENCODE mutation maf TCGA cancer
4 months ago by peter ▴ 10
14
votes
10
replies
4.9k
views
Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
RNA-Seq cancer variant calling gene fusion Tool
4 months ago by uhrigs ▴ 140
0
votes
0
replies
461
views
Job: PhD student in precision cancer bioinformatics | Charite, Berlin, Germany
cancer ngs berlin clinical precision Job
4 months ago by naveed.ishaque • 0
0
votes
0
replies
174
views
A database of cancer super-enhancers
ChIP-Seq super-enhancers cancer
4 months ago by MoHallal • 0
14
votes
2
replies
1.1k
views
Tutorial: Methylation Analysis Tutorial in R_part2
methylation RNA-Seq R cancer Tutorial
4 months ago by Hamid Ghaedi ★ 1.6k
0
votes
0
replies
138
views
Looking for VCF files and clinical data for cancer (prostate or cll or breast)
vcf cancer somatic mutations access to data
4 months ago by ansakim20 • 0
0
votes
0
replies
140
views
Finding mutational burden in TCGA dataset
genome python UTR tcga cancer
4 months ago by Jamie Watson • 0
0
votes
0
replies
148
views
METABRIC sample IDs
METABRIC sample cancer mRNA ID
5 months ago by Sylvia • 0
2
votes
4
replies
179
views
where to find cancer data
SNP cancer next-gen data fastq
updated 5 months ago by 52k • written 5 months ago by • 0
2
votes
3
replies
341
views
VEP for cancer annotation using COSMIC
VEP COSMIC Cancer
updated 5 months ago by 22k • written 5 months ago by ▴ 40
0
votes
5
replies
275
views
development of NGS pipeline for variant calling in lung cancer
cancer NGS pipeline snp next-gen
updated 5 months ago by ▴ 30 • written 5 months ago by • 0
0
votes
0
replies
184
views
Calling UTRs in TCGA dataset
TCGA cancer UTR ORF
5 months ago by Jamie Watson • 0
6
votes
11
replies
5.7k
views
9 follow
RNAseq data and PAM50 method
rna-seq PAM50 Breast Cancer unsupervised
updated 6 months ago by 20 • written 7.1 years ago by ▴ 20
25
votes
23
replies
11k
views
14 follow
Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
cancer exome-sequencing copynumber
updated 6 months ago by • 0 • written 7.5 years ago by ★ 3.0k
16
votes
2
replies
5.6k
views
Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
python R cancer genetics sequencing Job
6 months ago by Cyriac Kandoth 5.6k
8
votes
4
replies
322
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis cancer driver genes
updated 6 months ago by 75k • written 6 months ago by ▴ 210
0
votes
0
replies
235
views
Correcting variant allele fraction using tumor purity (experimentally measured)
variant calling sequencing cancer SNP next-gen
7 months ago by Luca Beltrame ▴ 220
0
votes
0
replies
539
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
cancer bioinformatics postdoc biomarkers Job
7 months ago by dan.brewer ▴ 120
1
vote
2
replies
1.5k
views
targeted bam file from database for breast cancer
ngs cancer targeted
updated 7 months ago by 20 • written 3.8 years ago by ▴ 180
0
votes
0
replies
459
views
Job: FDA Postdoctoral Research Fellowship To Quantify Hotspot Myeloid Neoplasm Associated Mutations in Blood by EC-NGS
sequencing next-gen gene mutation cancer Job
7 months ago by meagan.myers • 0
72
votes
13
replies
12k
views
12 follow
Tutorial: Exploring cancer mutation data portals
Cancer Data Portal Mutation TCGA ICGC Tutorial
7 months ago by Malachi Griffith 19k
2
votes
0
replies
273
views
Tool: driveR - Prioritizing Cancer Driver Genes Using Genomics Data
driver R cancer driver gene Tool
8 months ago by egeulgen ★ 1.1k
0
votes
0
replies
600
views
Job: Staff Scientist, Ph.D., or Postdoctoral Position in Bioinformatics
RNA-Seq ChIP-Seq Cancer Epigenetics CRISPR Job
8 months ago by Gjain 5.6k
3
votes
0
replies
405
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
cancer postdoc machine learning Job
9 months ago by dan.brewer ▴ 120
0
votes
3
replies
797
views
Job: Master internship in bioinformatics: Inference of single-cell miRNA-seq data in cancer (to be followed by PhD)
miRNA single cell RNA-seq R cancer Job
updated 9 months ago by • 0 • written 9 months ago by ▴ 40
4
votes
1
reply
379
views
Forum: Help with Bioinformatics Course
cancer Forum
written 10 months ago by • 0
0
votes
1
reply
895
views
Log Transformation of Raw data before Robust Z-score analysis
cells Z scores statistics Robust Z-scores cancer
updated 9 months ago by 12k • written 9 months ago by • 0
24
votes
0
replies
1.5k
views
Tutorial: Resources / databases for clinical interpretation of cancer variants
variant interpretation annotation clinical cancer Tutorial
9 months ago by Malachi Griffith 19k
134
votes
21
replies
61k
views
18 follow
Database Of Tumor Suppressors And/Or Oncogenes
cancer gene database oncogene tumor
9 months ago by Malachi Griffith 19k
50 results • Page 1 of 1
Recent Votes
Gene Set Enrichment Analysis
Answer: Would this laptop be sufficient for small dataset/sequence analysis?
Answer: What's the biggest thing you dislike about bioinformatics?
Comment: opening downloaded files from STRING protein network without R
Comment: What's the biggest thing you dislike about bioinformatics?
Gene Set Enrichment Analysis
Comment: Removing genes of Seurat object during integration pipeline
Recent Locations • All
United States, 7 minutes ago
Egypt, 7 minutes ago
United States, 10 minutes ago
USA, 10 minutes ago
Brazil, 11 minutes ago
Romania, 12 minutes ago
United Kingdom, 13 minutes ago
Recent Awards • All
Teacher to WouterDeCoster 45k
Scholar to ATpoint 52k
Teacher to Kevin Blighe 75k
Scholar to Mensur Dlakic ★ 12k
Popular Question to irfanwustl ▴ 20
Teacher to Istvan Albert 88k
Popular Question to finswimmer 14k
Recent Replies
Answer: Would this laptop be sufficient for small dataset/sequence analysis? by Mensur Dlakic ★ 12k
16 GB of RAM will not cut it for any serious bioinformatics application these days. Doubly so if you choose to run Windows.
Comment: inquiry related to snpsift by Kevin Blighe 75k
I see - thanks. I am not sure that `SnpSift annotate` can do this, but you can first remove the original ID via `bcftools`, as follows: …
Answer: Forum: Job opportunities in Europe, with and without a PhD by Kevin Blighe 75k
South Africa? - very nice. I had been considering moving there, would you believe. There is no correct answer to your question, and one ca…
Comment: inquiry related to snpsift by rheab1230 • 0
the command: java -jar SnpSift.jar annotate dbSnp144.vcf variants.vcf > variants_annotated.vcf I am getting no error. the input file …
Comment: Displaying points which fall outside of the plot window in EnhancedVolcano by os306 ▴ 10
Hi there, just to follow up on this, I used your package to generate my volcano plots and got exactly what I was looking for. I now wish to…
Comment: inquiry related to snpsift by Kevin Blighe 75k
Hi, please show: 1. the command(s) that you are using 2. a sample of your input data 3. a sample of your output data 4. any status, wa…
Comment: opening downloaded files from STRING protein network without R by fionajcunningham • 0
thanks GenoMax I will try this sorry for delay in reply!! Fiona
Comment: What's the biggest thing you dislike about bioinformatics? by WouterDeCoster 45k
The alternative, constant off-by-one errors, aren't my idea of fun either :-)
Comment: Removing genes of Seurat object during integration pipeline by Stevens • 0
Yeah, you can filter min_cells in Seurat with SCtransform. That would probably change the gene numbers in the SCT assay of the object. I u…
Comment: Removing genes of Seurat object during integration pipeline by ATpoint 52k
Doesn't sctransform has a `min_cells` parameter that you could use here? It will only consider genes detected in at least `min_cells` cells…
Comment: Removing genes of Seurat object during integration pipeline by Stevens • 0
I was thinking of making it an arbitrary cut off of 10 cells, Seurat's documentation uses 3 for reading in a single sample. I believe that …
Answer: How To Split A Bam File By Chromosome by etiennedanis • 0
With samtools v1.11, ```samtools view -b in.bam chr1 > out.bam``` did not work for me. But ```samtools view -b in.bam 1 > out.bam``` wo…
Comment: Removing genes of Seurat object during integration pipeline by ATpoint 52k
What is a "few" cells? So how many? You would need to manually calculate the fraction of cells expressing a certain gene. Not sure in which…
Comment: I want to make a graph for conserved regions by sa.youssef • 0
Thanks so much, it is a great suggestion. may I ask you if you know a way to visualize the results of these data in my report? as we are wo…
Comment: Minfi - estimateCellCounts by Papyrus ★ 1.1k
I understand that you have whole blood samples and that's why you expect them to have more granulocytes? You could also try the [ENmix][1] …
Traffic: 1322 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6