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50 results • Page
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Showing top results for tag:
chip-seq
•
reset
0
votes
0
replies
25
views
how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
14 hours ago by
shangguandong1996
▴ 10
0
votes
0
replies
55
views
Comparison of ChIP-seq tracks from two cell lines using FC over control (ENCODE data)
ChIP-seq
H3K27ac
bigWig
ENCODE
13 days ago by
erica.fary
• 0
7
votes
5
replies
295
views
NovaSeq Duplicates
duplicationrate
ChIP-seq
updated 14 days ago by
lieven.sterck
10k • written 15 days ago by
trio.qbm
▴ 10
0
votes
1
reply
116
views
Determine the significance of peak overlaps (bedtools)
bedtools
peak
ChIP-seq
eCLIP
updated 16 days ago by
Istvan Albert
87k • written 17 days ago by
kstangline
▴ 20
0
votes
0
replies
78
views
ChIP-seq peak calling with MACS2 - some large peaks for transcription factor
chip-seq
macs2
peakcalling
17 days ago by
becky.reese17
• 0
1
vote
3
replies
1.9k
views
ChromHMM: chromatin states to genome % coverage?
ChIP-Seq
ChromHMM
updated 17 days ago by
Yussuf
• 0 • written 4.1 years ago by
Sy80
▴ 10
5
votes
6
replies
435
views
noisy chip-seq peaks
deeptools
macs2
chip-seq
peaks
igv
updated 21 days ago by
jared.andrews07
9.2k • written 22 days ago by
kolikolmakani14
• 0
3
votes
9
replies
534
views
Unable to install DiffBind and DESeq2 4.0.3 and 4.0.4 (Package not available on these version of R error)
ChIP-Seq
updated 21 days ago by
MK
• 0 • written 4 weeks ago by
tiptophamza
• 0
0
votes
6
replies
2.9k
views
6 follow
findGenomeMotif.pl in Homer couldn't work properly
ChIP-Seq
Homer
updated 23 days ago by
Fleur
• 0 • written 3.6 years ago by
xuenjun1
• 0
0
votes
0
replies
133
views
Homer annotatePeaks.pl motif density histogram output only showing 0s for motif occurrences
ATAC-seq
Homer
next-gen
ChIP-Seq
motif
27 days ago by
rintsen.sherpa
• 0
0
votes
2
replies
122
views
differential binding analysis of cut-tag peak data
ChIP-Seq
updated 27 days ago by
rpolicastro
5.1k • written 27 days ago by
17318598206
• 0
0
votes
1
reply
106
views
why i don not have peak when use DiffBind
ChIP-Seq
27 days ago by
17318598206
• 0
0
votes
1
reply
1.9k
views
No genes' ID in peak annotations during ChiP-Seq with ChIPpeakAnno R package
ChIP-Seq
annotation
updated 28 days ago by
hukai916
• 0 • written 5.5 years ago by
MarcinKosinski
▴ 10
1
vote
2
replies
480
views
Confused about TSS coordinates
ChIP-Seq
updated 29 days ago by
Zhenpeng Yu
• 0 • written 21 months ago by
srhic
▴ 40
3
votes
3
replies
121
views
How can the assumption of a broad/narrow peak be checked?
macs2
ChIP-Seq
29 days ago by
Sam
▴ 160
7
votes
11
replies
2.2k
views
What is the appropriate approach for ChIPseq protein genome occupancy % calculation?
ChIP-Seq
updated 29 days ago by
Biostar
20 • written 5.8 years ago by
AlexAbdulkaderKheirallah
▴ 110
31
votes
34
replies
11k
views
10 follow
How To Randomly Sample A Subset Of Lines From A Bed File
bed
chip-seq
updated 29 days ago by
cjgunase
▴ 30 • written 7.5 years ago by
bede.portz
▴ 490
9
votes
6
replies
620
views
Tool:
DiffBind 3.0: Extensive updates in Bioconductor 3.12
ChIP-Seq
DiffBind
ATAC-seq
chipseq
diffbind
Tool
updated 4 weeks ago by
shuwanli
• 0 • written 5 months ago by
Rory Stark
★ 1.0k
2
votes
2
replies
102
views
chr20_KI270871v1_alt in HG38 Broad Variant and Blacklist regions
ChIP-Seq
4 weeks ago by
ahadli.farid
▴ 30
0
votes
2
replies
122
views
How much sequencing coverage do you need in order to detect SNP's across the whole genome
sequencing
SNP
ChIP-Seq
next-gen
4 weeks ago by
dk0319
▴ 20
2
votes
2
replies
114
views
Diffbind-weird Fold value
ChIP-Seq
updated 4 weeks ago by
Rory Stark
★ 1.0k • written 4 weeks ago by
wei.zhang
• 0
0
votes
0
replies
96
views
A database of cancer super-enhancers
ChIP-Seq
super-enhancers
cancer
4 weeks ago by
MoHallal
• 0
1
vote
3
replies
841
views
Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq
IDR
RNA-Seq
updated 4 weeks ago by
Biostar
20 • written 2.7 years ago by
salamandra
▴ 360
3
votes
7
replies
134
views
DiffBind analysis - minCount parameter in dba.count()
ChIP-Seq
DiffBind
updated 5 weeks ago by
Rory Stark
★ 1.0k • written 5 weeks ago by
vartika
• 0
0
votes
2
replies
121
views
Bowtie: "Floating point exception: 8"
bowtie
alignment
ChIP-Seq
updated 5 weeks ago by
swbarnes2
9.7k • written 5 weeks ago by
Marco
▴ 20
1
vote
1
reply
83
views
How to validate artificially generated enhancers ?
sequencing
ChIP-Seq
genome
machine Learning
5 weeks ago by
ahteshamabbasi1996
▴ 10
1
vote
0
replies
81
views
Integrative analysis of RNA-Seq and Chip-Seq data in R
RNA-Seq
ChIP-Seq
R
5 weeks ago by
g.koorsen
▴ 10
0
votes
9
replies
204
views
The maximum number of peaks in a ChIP-seq data (bigWig format)
ChIP-Seq
5 weeks ago by
prgrmmr70
• 0
0
votes
0
replies
90
views
SNPCHIP data analysis
ChIP-Seq
genome
sequencing
5 weeks ago by
arfazevedo
• 0
0
votes
1
reply
97
views
DiffBind with duplicates
DiffBind
ChIP-Seq
5 weeks ago by
jc2842
• 0
0
votes
2
replies
136
views
plotCorrelation scatter plot ChIP-seq data
ChIP-Seq
deepTools
correlation
5 weeks ago by
Marco
▴ 20
2
votes
3
replies
126
views
Chip-seq balcklisted region information for the latest version of genome ensembl GRCm38
ChIP-Seq
alignment
5 weeks ago by
luckysardar171
▴ 10
0
votes
0
replies
108
views
converting bedgraph to Bigwig by HOMER
HOMER
bedGraph
BigWig
bioinformatics
ChIP-seq
5 weeks ago by
saha.shagnik
• 0
6
votes
4
replies
3.9k
views
Forum:
Chip-Seq Data Analysis
chip-seq
Forum
updated 5 weeks ago by
prgrmmr70
• 0 • written 8.9 years ago by
Raony Guimarães
★ 1.1k
2
votes
3
replies
186
views
Deeptools plotHeatmap values
ChIP-Seq
Deeptools
plotHeatmap
tables
updated 15 days ago by
2nelly
▴ 270 • written 5 weeks ago by
saha.shagnik
• 0
3
votes
2
replies
122
views
Cut&Tag / ChIPseq analysis
ChIP-Seq
Cut&tag
6 weeks ago by
wenbinm
▴ 30
0
votes
0
replies
227
views
Job:
Job Posting - Computational Biologist at UTSW
RNA-Seq
ChIP-Seq
next-gen
Job
6 weeks ago by
Laura.banaszynski
• 0
1
vote
2
replies
122
views
CLIP enrichment analysis
ChIP-Seq
updated 6 weeks ago by
i.sudbery
11k • written 6 weeks ago by
noahhelton98
▴ 10
5
votes
10
replies
211
views
bamCoverage bin size for narrow and broad histone marks
ChIP-Seq
deeptools
6 weeks ago by
Marco
▴ 20
0
votes
0
replies
126
views
Correlation heatmap for ChIP-seq data: Pearson or Spearman?
ChIP-Seq
correlation
deeptools
6 weeks ago by
Marco
▴ 20
0
votes
3
replies
150
views
Chip-seq IgG as control or Input DNA or usage of both
ChIP-Seq
next-gen
sequencing
6 weeks ago by
luckysardar171
▴ 10
0
votes
0
replies
118
views
MultiBigwigSummary of deepTools keeps on running for a long time
ChIP-Seq
multibigwigsummary
deeptools
ubuntu
6 weeks ago by
saha.shagnik
• 0
2
votes
1
reply
144
views
Interpreting ATAC-SEQ motif enrichment output
ATAC-Seq
ChIP-Seq
updated 6 weeks ago by
ATpoint
48k • written 6 weeks ago by
emalekos
• 0
2
votes
4
replies
125
views
Finding Fragment Size chip-seq paired end reads
ChIP-Seq
sequencing
6 weeks ago by
luckysardar171
▴ 10
0
votes
2
replies
138
views
Chip_seq analysis remove duplicates
ChIP-Seq
7 weeks ago by
luckysardar171
▴ 10
0
votes
2
replies
258
views
bigWig tracks inconsistent with MACS2 callpeak
ChIP-Seq
MACS2
7 weeks ago by
lida
▴ 10
2
votes
6
replies
142
views
convert DNA FASTA file to RNA FASTA file
RNA-Seq
ChIP-Seq
sequence
updated 7 weeks ago by
JC
12k • written 7 weeks ago by
xiaoleiusc
▴ 70
14
votes
10
replies
3.8k
views
from txt to bed
ChIP-Seq
updated 7 weeks ago by
Biostar
20 • written 4.1 years ago by
dimitrischat
▴ 140
0
votes
5
replies
165
views
Pair ended samples cannot map to the genome
ChIP-Seq
7 weeks ago by
SayHey
• 0
3
votes
3
replies
206
views
Major issue with DiffBind 3?
atac-seq
diffbind
diffbind3
ChIP-Seq
bioconductor
updated 7 weeks ago by
Rory Stark
★ 1.0k • written 10 weeks ago by
musaddeque.ahmed
▴ 20
50 results • Page
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