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109 results • Page
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Filtering for tag:
consensus
•
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0
votes
0
replies
277
views
Deletions are missed from consensus sequence even when they are predominant. Is this common to vcf2fq of vcfutils?
vcf2fq
consensus
bcftools
indel
23 days ago by
malaya77
• 0
29
votes
11
replies
3.7k
views
7 follow
Tutorial:
Generating consensus sequence from bam file
bam
fasta
consensus
Tutorial
updated 6 weeks ago by
zjamal.msbi19rcms
• 0 • written 2.1 years ago by
finswimmer
14k
0
votes
0
replies
202
views
PacBio's variantCaller's vcf inconsistent with it's consensus sequence
pacbio
variant
variantCaller
vcf
consensus
updated 4 months ago by
Biostar
20 • written 5 months ago by
mark.rose
▴ 40
0
votes
2
replies
182
views
FASTA file header
consensus
5 months ago by
storm1907
• 0
0
votes
1
reply
264
views
How to generate a Consensus sequence from SRA BLAST output from web server?
consensus
sequence
sra
blast
NGS
6 months ago by
lokdeep17
• 0
0
votes
2
replies
193
views
Ambiguous places in consensus
biopthon
consensus
ambiguous
dumb_consensus
8 months ago by
adrian18_07
▴ 10
0
votes
2
replies
297
views
How to make consensus sequences for a list?
consensus
biopython
9 months ago by
adrian18_07
▴ 10
0
votes
1
reply
193
views
conservative position extraction
sequence
consensus
conservative
fastq
parsing
updated 11 months ago by
JC
12k • written 11 months ago by
gatiyatov
• 0
0
votes
9
replies
1.2k
views
get consensus sequence from bam file with insertions
consensus
updated 12 months ago by
yichen503
▴ 10 • written 23 months ago by
Vvedenskiia
• 0
5
votes
6
replies
769
views
Methods for Doing Consensus Variant Calling between multiple callers
WES
DNA
Consensus
Variant
Calling
18 months ago by
djevanclark
▴ 40
3
votes
3
replies
275
views
How are high phred scores represented?
consensus
assembly
updated 21 months ago by
colindaven
★ 2.7k • written 21 months ago by
BioinformaticsLad
▴ 170
0
votes
0
replies
594
views
Consensus genotype of MUTECT1, MUTECT2, Varscan, Muse and Somaticsniper
consensus
mutation
bcftools
21 months ago by
Shicheng Guo
★ 8.6k
3
votes
4
replies
1.6k
views
bcftools mpileup --max depth : What would be a reasonable setting for this option?
bcftools
mpileup
consensus
23 months ago by
Cookie-san
▴ 110
1
vote
1
reply
1.1k
views
Calling haploid consensus sequence from vcf
vcf
samtools
bcftools
consensus
haploid
updated 23 months ago by
Kevin Blighe
72k • written 24 months ago by
philodendron
• 0
1
vote
3
replies
2.5k
views
customized clusterAlg of NMF in consensusClusterPlus
R
NMF
consensus
cluster
updated 24 months ago by
Biostar
20 • written 3.4 years ago by
sugus
▴ 60
0
votes
7
replies
937
views
Does SPAdes produce consensus sequence?
consensus
Assembly
2.0 years ago by
DanielC
▴ 140
0
votes
0
replies
419
views
Gaps in sequenced DNA consensus generated from contigs
gaps
consensus
contigs
2.0 years ago by
DanielC
▴ 140
0
votes
2
replies
546
views
Identifying consensus sequence between multiple Arabidopsis genome sequences
Alignment
Consensus
SNPs
Variations
Plant
2.3 years ago by
bioinforesearchquestions
▴ 280
2
votes
4
replies
1.8k
views
The fasta sequence does not match the REF allele at chr1:1298836 ?
bcftools
vcf
consensus
2.3 years ago by
RobertUt
▴ 30
3
votes
4
replies
1.7k
views
How to get consensus FASTA sequence from GFA assembly graph?
gfa
consensus
2.3 years ago by
shenwei356
5.8k
2
votes
10
replies
1.8k
views
bcftools mpileup no output (empty calls.bcf file)
bcftools
samtools
mpileup
consensus
calls.bcf
2.3 years ago by
RobertUt
▴ 30
0
votes
3
replies
1.1k
views
How to get a consensus of the contigs obtained from an assembler like spades?
contigs
consensus
spades
2.3 years ago by
DanielC
▴ 140
3
votes
4
replies
2.0k
views
Majority consensus from bam file
consensus
alignment
updated 2.5 years ago by
trausch
★ 1.6k • written 2.5 years ago by
erneheay
▴ 10
0
votes
6
replies
554
views
Should I replace heterozygous variants to make a consensus
Variant
Consensus
Genome
assembly
Heterozygous
2.5 years ago by
deepti1rao
▴ 30
2
votes
5
replies
1.3k
views
Merge multiple overlapping consensus sequences
assembly
consensus
updated 2.6 years ago by
Ram
32k • written 2.8 years ago by
kspata
▴ 70
0
votes
2
replies
1.6k
views
Generate Consensus Sequence from Pairwise Alignment
alignment
Consensus
Blast
2.8 years ago by
kspata
▴ 70
3
votes
4
replies
2.7k
views
Tutorial:
gencore: a tool to reduce sequencing noises by generating consensus reads
consensus
sequencing noise
OpenGene
Tutorial
2.9 years ago by
chen
★ 2.1k
4
votes
4
replies
2.8k
views
Does vcf-consensus support indels?
consensus
vcf-consensus
updated 3.0 years ago by
Johan Zicola
▴ 60 • written 5.1 years ago by
user230613
▴ 290
4
votes
9
replies
8.6k
views
7 follow
How To Get Consensus Sequence Including Variant From A Vcf File For Several Individuals...?
vcf
consensus
gatk
variant
calling
updated 3 days ago by
Harry_Wat
• 0 • written 8.5 years ago by
Bioch'Ti
★ 1.0k
1
vote
5
replies
1.7k
views
Consensus Sequence And Assembly Of Multiple Group Of Sequences
consensus
updated 3.2 years ago by
Biostar
20 • written 7.5 years ago by
Nicolas Rosewick
9.3k
3
votes
7
replies
2.0k
views
Tune criteria for extraction of consensus sequence from bam/sam alignment
bam
sam
consensus
bcftools
vcfutils
3.2 years ago by
al-ash
▴ 150
1
vote
1
reply
1.5k
views
consensus sequence of complex estructural variants
consensus
estructural variant
updated 3.3 years ago by
Biostar
20 • written 6.2 years ago by
user230613
▴ 290
2
votes
2
replies
5.2k
views
fgbio: Calling consensus reads using UMI
fgbio
consensus
updated 3.3 years ago by
nilshomer
▴ 60 • written 3.3 years ago by
Nicolas Rosewick
9.3k
0
votes
1
reply
924
views
Consensus sequences with reference allele instead of missing
bcftools
consensus
missing bases
3.4 years ago by
agathejouet
• 0
2
votes
2
replies
1.0k
views
all posible sequences from consensus
sequence
python
consensus
TSS
DNA
updated 3.4 years ago by
Pierre Lindenbaum
135k • written 3.4 years ago by
hgarza
• 0
1
vote
4
replies
751
views
Making seq chimeras and concatenation in protein MSAs
alignment
concatenation
consensus
consambig
emboss
3.4 years ago by
roussine
▴ 10
8
votes
11
replies
4.6k
views
How To Merge Consensus Motif To Degenerate Motif ? [Motif Merge Or Motif Clustering]
motif
merge
clustering
consensus
updated 3.5 years ago by
Biostar
20 • written 8.1 years ago by
Yu
▴ 110
0
votes
5
replies
2.0k
views
Pipeline design: from reads to consensus sequences of multiple individuals
pipeline
mapping
alignment
variant
consensus
3.6 years ago by
agathejouet
• 0
7
votes
3
replies
1.2k
views
Conflicting consensus sequences from different tools (bug in hmmemit?)
hmm
consensus
bipython
python
updated 3.6 years ago by
cryptogenomicon
▴ 150 • written 3.6 years ago by
Joe
19k
1
vote
2
replies
979
views
Which strategy to get draft genome: rawread mapping or de novo assembly?
consensus
Assembly
genome
3.6 years ago by
curiousbiologist
▴ 40
3
votes
2
replies
1.5k
views
Consensus fasta file with uncovered bases set to Ns
reference
genome
BED
fasta
consensus
updated 3.6 years ago by
Matt Shirley
9.5k • written 3.6 years ago by
deepti1rao
▴ 30
1
vote
11
replies
2.0k
views
Extract consensus dna sequence of multiple genes from multiple bam files in fasta format
samtools
fasta
genes
bam
consensus
3.6 years ago by
bioinfo8
▴ 150
11
votes
1
reply
2.5k
views
Merge Scaffolds From Different Individuals?
assembly
contigs
consensus
3.7 years ago by
Gabriel R.
★ 2.8k
3
votes
3
replies
1.4k
views
Protein Sequence Analyses
protein
sequence
consensus
updated 3.8 years ago by
Elisabeth Gasteiger
★ 1.9k • written 3.8 years ago by
l.souza
▴ 70
0
votes
1
reply
1.5k
views
how do I get a wonderful genome draft? : gap closed step
draft genome
gap closed
consensus
3.8 years ago by
vmicrobio
▴ 270
4
votes
4
replies
948
views
Clumpify : issues with consensus mode (reverse complement of R1)
clumpify
consensus
updated 3.8 years ago by
Brian Bushnell
17k • written 3.8 years ago by
Nicolas Rosewick
9.3k
5
votes
1
reply
2.9k
views
generating a reasonable consensus with bcftools + vcf-consensus
SNP
consensus
bam
4.0 years ago by
mths_b
▴ 40
2
votes
3
replies
1.7k
views
IUAPC codes in consensus sequence ? samtools mpileup / bcftools call / bcftools consensus
bcftools
consensus
IUAPC
updated 4.1 years ago by
Pierre Lindenbaum
135k • written 4.1 years ago by
Kevin D
▴ 30
0
votes
0
replies
985
views
Trying to align Stride sequences and find consensus sequence
Stride
alignment
consensus
4.2 years ago by
ericbrenner
• 0
1
vote
2
replies
2.2k
views
Generating consensus sequences
consensus
fasta
bwa
vcftools
updated 4.4 years ago by
vmicrobio
▴ 270 • written 4.4 years ago by
Lina F
▴ 200
109 results • Page
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