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120 results • Page
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Filtering for tag:
coordinates
•
reset
0
votes
0
replies
43
views
Find genomic coordinates for exons in historical transcripts
genome
exon
human
coordinates
9 days ago by
raptly61549
• 0
0
votes
1
reply
173
views
Method detecting surface / bounday Carbon-alpha (or sidechains) atoms of PDB 3d coordinates / points
pdb
amino acid
surface
coordinates
protein
updated 7 weeks ago by
Mensur Dlakic
★ 10k • written 11 weeks ago by
andres.susrud
• 0
228
votes
32
replies
67k
views
22 follow
Tutorial:
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates
tutorial
Tutorial
updated 7 weeks ago by
ashotmarg2004
▴ 10 • written 7.5 years ago by
Obi Griffith
19k
198
votes
30
replies
111k
views
22 follow
Tool:
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
genome
coordinates
conversion
liftover
ensembl
Tool
updated 3 months ago by
zlbio12
• 0 • written 8.1 years ago by
Malachi Griffith
18k
2
votes
4
replies
277
views
Get gene promoter coordinates
gene
promoter
coordinates
hg38
4 months ago by
sabin
▴ 30
12
votes
10
replies
1.6k
views
6 follow
Create Chain File for Converting Genome Coordinates
assembly
genome
liftover
coordinates
alignment
updated 6 months ago by
Charles Warden
8.0k • written 20 months ago by
Gabriel
▴ 50
3
votes
5
replies
281
views
Get rs ids using chromsome coordinates
rs id
Chromosome
Coordinates
Hg38
updated 6 months ago by
Biostar
20 • written 8 months ago by
Mahan
▴ 70
0
votes
1
reply
537
views
EPIC methylation manifest GRch38 query
methylation
coordinates
EPIC
bedgraph
CpG
10 months ago by
prasundutta87
▴ 470
1
vote
1
reply
391
views
determine exon number from variant genomic coordinates
exon
coordinates
variant
human
exome
updated 11 months ago by
rbagnall
★ 1.7k • written 11 months ago by
cocchi.e89
▴ 140
5
votes
3
replies
5.0k
views
Easy Way To Map Cds Coordinates To Genomic Coordinates
cds
mapping
gff
bed
coordinates
updated 14 months ago by
Shicheng Guo
★ 8.6k • written 10.1 years ago by
Alper Yilmaz
▴ 90
0
votes
0
replies
266
views
conversion of genomic variant to coding variant to protein variant
SNP
conversion
variant
coordinates
15 months ago by
justinms
▴ 10
0
votes
2
replies
354
views
index tabulate file to get chrom, pos, ref, alt
tabix
coordinates
variants
indexing
updated 15 months ago by
Pierre Lindenbaum
135k • written 15 months ago by
damian.loska
▴ 20
0
votes
2
replies
390
views
Retrieve base position/coordinates due to AA position on a protein
base
position
coordinates
aminoacid
22 months ago by
cocchi.e89
▴ 140
1
vote
8
replies
481
views
UCSC different exome sets per each gene
ucsc
exomes
gene
coordinates
updated 22 months ago by
Luis Nassar
▴ 420 • written 22 months ago by
cocchi.e89
▴ 140
1
vote
1
reply
1.7k
views
genetic coordinates hg19/GRCh37 latest version
refseq
gene
coordinates
hg19
grch37
2.2 years ago by
cocchi.e89
▴ 140
1
vote
1
reply
2.5k
views
Map Uniprot On Genomic Coordinates (Eg. Hg19)
coordinates
mapping
uniprot
updated 2.3 years ago by
Biostar
20 • written 9.0 years ago by
jirivoller
▴ 10
17
votes
3
replies
11k
views
Getting Sequence Based On Chromosome No And Coordinates From Whole Genome Fasta File
sequence
coordinates
tool
updated 2.4 years ago by
Biostar
20 • written 9.0 years ago by
Anurag
▴ 20
0
votes
1
reply
927
views
How to divide a chromosome into arms and center?
chromsome
arm
center
bed
coordinates
2.4 years ago by
Zee_S
▴ 60
11
votes
14
replies
1.5k
views
Extracting snps from a range of coordinates
vcf
SUB-SET
SNP
gene
coordinates
updated 2.5 years ago by
toralmanvar
▴ 910 • written 2.5 years ago by
S AR
▴ 60
19
votes
11
replies
8.0k
views
8 follow
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
coordinates
java
pdb
parsing
structure
updated 2.6 years ago by
Ram
32k • written 10.8 years ago by
Jeremiahloh
▴ 30
20
votes
7
replies
13k
views
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle
ucsc
coordinates
galaxy
updated 2.6 years ago by
Ram
32k • written 10.9 years ago by
pixie@bioinfo
★ 1.4k
3
votes
5
replies
682
views
Get variant position knowing the gene name, base change, and NM#
gene
variant
genome
coordinates
updated 2.8 years ago by
Tao
▴ 420 • written 2.8 years ago by
bisansamara
▴ 10
0
votes
1
reply
1.6k
views
Retrieve genomic coordinates (locus start, locus end) from blastn hits?
blastn
locus
coordinates
reciprocal best hits
updated 2.9 years ago by
Biostar
20 • written 3.1 years ago by
sombrajo92
• 0
0
votes
1
reply
1.2k
views
Blast subject coordinates
Blast
Subject
Coordinates
updated 3.0 years ago by
Ram
32k • written 3.0 years ago by
deepti1rao
▴ 30
0
votes
1
reply
736
views
fantom5 enhancers GRCh38
enhancers
genomics
coordinates
r
fantom5
3.0 years ago by
Pin.Bioinf
▴ 290
0
votes
1
reply
675
views
how to get intergene coordinates for a single chromosome?
bedtools
intersect
intergene
coordinates
3.0 years ago by
Zee_S
▴ 60
0
votes
5
replies
2.6k
views
Finding hg19 coordinates for primers to make BED file
primers
coordinates
hg19
updated 3.0 years ago by
bioinfo89
▴ 40 • written 5.3 years ago by
adnan.haider.ra
▴ 10
9
votes
10
replies
9.1k
views
9 follow
Is There An Easy Way Of Getting Gene Symbols From Genomic Coordinates?
gene
coordinates
updated 3.0 years ago by
Roman Valls Guimerà
▴ 560 • written 7.7 years ago by
merajazizmeraj
▴ 20
30
votes
19
replies
16k
views
9 follow
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
ensembl
ucsc
genome
mapping
coordinates
updated 3.3 years ago by
ericrkofman
▴ 10 • written 9.4 years ago by
Ryan D
★ 3.4k
1
vote
2
replies
2.8k
views
Mutation Taster Gdna Coordinates
mutation
coordinates
updated 3.5 years ago by
Biostar
20 • written 8.6 years ago by
jp.of.mars
• 0
9
votes
4
replies
841
views
Data Mining from my Genomic Coordinates
ngs
vcf
database
sql
coordinates
updated 3.5 years ago by
Kevin Blighe
72k • written 3.5 years ago by
Paul
★ 1.4k
36
votes
13
replies
21k
views
Exon Coordinates Of Hg19 Genome Download
exon
coordinates
hg
human
updated 3.5 years ago by
Biostar
20 • written 10.1 years ago by
Neeraj
▴ 150
2
votes
2
replies
1.3k
views
[hg19] Reading genes with CCDS
GRCH37
hg19
CCDS
coordinates
updated 3.6 years ago by
Satyajeet Khare
★ 1.6k • written 3.6 years ago by
mollitz
▴ 70
2
votes
1
reply
2.4k
views
Can One Use The Ensembl Api To Retrieve Multiple Alignment Between The 46 Vertebrate Species
coordinates
alignment
ensembl
updated 3.9 years ago by
Biostar
20 • written 8.7 years ago by
bingyu19821270
▴ 40
21
votes
19
replies
14k
views
8 follow
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb
protein
coordinates
parsing
perl
updated 3.9 years ago by
Biostar
20 • written 10.0 years ago by
Sakshi
▴ 20
6
votes
4
replies
1.6k
views
Construct a gene arrow map to show the gene features
gene map
Coordinates
Annotation
updated 4.0 years ago by
Pierre Lindenbaum
135k • written 4.0 years ago by
utkarsh.sood
▴ 30
1
vote
1
reply
1.9k
views
Variant coordinates in dbSNP VCF
dbSNP
VCF
coordinates
indel
RSPOS
4.2 years ago by
wjastle
▴ 10
0
votes
0
replies
1.1k
views
MCS-R2 (encode HS-40) hg19 genomic coordinates
coordinates
DNase
ENCODE
Assembly
4.2 years ago by
eurioste
▴ 20
19
votes
16
replies
8.5k
views
7 follow
Get Snp Position From A Python Interface.
python
snp
tabix
coordinates
updated 4.4 years ago by
forever
▴ 80 • written 8.3 years ago by
Peixe
▴ 610
1
vote
0
replies
1.3k
views
extract genomic sequence based on transcripts
genome
transcripts
FASTA
extract
coordinates
updated 4.8 years ago by
Ram
32k • written 4.8 years ago by
lay_0
▴ 50
0
votes
1
reply
1.8k
views
Switch genomic coordinates to transcriptomic coordinates
RNA-Seq
fasta
coordinates
gene
updated 4.8 years ago by
slw287r
▴ 120 • written 4.8 years ago by
james.lloyd
▴ 100
1
vote
2
replies
1.8k
views
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
liftover
coordinates
reference genomes
updated 4.8 years ago by
Denise CS
★ 5.1k • written 4.8 years ago by
Irene@Sequencing.com
▴ 260
1
vote
2
replies
1.3k
views
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
sequencing
coordinates
genome
bed
bedgraph
updated 5.0 years ago by
Alex Reynolds
32k • written 5.0 years ago by
biohack92
▴ 150
2
votes
2
replies
1.8k
views
extract CDS sequence between two genomic positions
sequencing
R
bam
cds
coordinates
updated 5.2 years ago by
abascalfederico
★ 1.1k • written 5.2 years ago by
morganeboone
• 0
4
votes
1
reply
1.3k
views
Encoding zero-length features in BED format
bed
genome
coordinates
updated 5.2 years ago by
Chris Miller
21k • written 5.2 years ago by
Daniel Standage
4.0k
4
votes
2
replies
2.7k
views
How to get coordinates from UCSC Genome Browser
coordinates
ucsc genome browser
updated 5.4 years ago by
Alex Reynolds
32k • written 5.4 years ago by
fk566938
▴ 10
1
vote
2
replies
2.1k
views
How to annotate a sequence with its genomic coordinates ?
RNA sequence
coordinates
updated 5.4 years ago by
rutial
▴ 40 • written 6.3 years ago by
lin.pei26
▴ 100
11
votes
4
replies
2.9k
views
What Coordinate System Does Biomart Use?
biomart
coordinates
updated 5.4 years ago by
Biostar
20 • written 10.0 years ago by
Ryan Thompson
★ 3.5k
15
votes
10
replies
15k
views
6 follow
How To Obtain Chromosome Locus From Coordinates
chromosome
coordinates
updated 5.4 years ago by
kindlychung
▴ 60 • written 10.3 years ago by
Prateek
★ 1.0k
2
votes
2
replies
1.2k
views
How to retrieve the chromosomal coordinates for a list of DNA markers ?
dna markers
coordinates
hg19
snps
updated 5.5 years ago by
Pierre Lindenbaum
135k • written 5.5 years ago by
Veera
▴ 90
120 results • Page
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The images seem to be missing from your post
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