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Showing top results for tag: databases • reset
0
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0
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39
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News: Cellosaurus release 39 is available
cell knowledgebase databases news line
3 days ago by Amos Bairoch ▴ 110
0
votes
0
replies
66
views
CNV/SNV databases
databases CNV SNV
9 days ago by BioQueen • 0
1
vote
4
replies
1.8k
views
Download UniProt databases via HTTP/HTTPS instead of FTP? (Google Apps Scripts Question)
UniProt Databases Google FTP sequence
updated 5 weeks ago by ▴ 740 • written 4.1 years ago by ▴ 30
1
vote
1
reply
142
views
What is the most convenient way to interact with ncbi?
databases nsbi
updated 3 months ago by 107k • written 3 months ago by ▴ 50
8
votes
9
replies
722
views
Good annotation databases for a VCF file (somatic variants)
VCF ANNOVAR somatic databases annotation
updated 12 weeks ago by ▴ 80 • written 4 months ago by ▴ 20
4
votes
3
replies
364
views
What Phenotype databases do you recommend for searching genes related to diseases?
disease phenotype databases
updated 4 months ago by ▴ 20 • written 7 months ago by ▴ 10
1
vote
1
reply
224
views
Compare different microbial databases
comparison microbial databases
updated 5 months ago by 107k • written 5 months ago by ▴ 10
0
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0
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163
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database about population data of aquatic animal organisms
databases
7 months ago by eridanus ▴ 30
0
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0
replies
274
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News: Cellosaurus release 37 is available
knowledgebase databases news cell line News
8 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
376
views
Job: Full-stack Developer to incorporate within the EUCANCan project (Barcelona, Spain)
databases variants job Job
10 months ago by bernatgel ★ 3.1k
2
votes
5
replies
1.7k
views
rna seq public databases
RNA-Seq databases
11 months ago by David_emir ▴ 390
1
vote
1
reply
251
views
Expression of miRNAs in different tissues
databases
updated 11 months ago by 54k • written 11 months ago by • 0
0
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2
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325
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Microbial protein BLAST
blast microbial proteins biopython databases
updated 14 months ago by ▴ 150 • written 14 months ago by • 0
1
vote
2
replies
326
views
Where do I find viral genomes that can attack a particular phylum
databases virus crustaceans genomes
16 months ago by Amaranta Remedios ▴ 10
1
vote
1
reply
342
views
How to identify domains / proteins physically interacting with a specific drug?
proteins domains metformin databases networks
17 months ago by martonmarcelllaszlo • 0
11
votes
5
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1.7k
views
Tool: A resource with diverse databases and tools for SARS-CoV-2 (COVID-19) bioinformatics -- Updates
COVID-19 Databases Corona Tool SARS-CoV-2
18 months ago by Michael ▴ 240
1
vote
0
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917
views
The best way to download target-drug data in csv format from ChEMBL
ChEMBL databases
18 months ago by little_more ▴ 40
0
votes
2
replies
916
views
What are Metatranscriptomics databases?
metatranscriptomics metagenomics databases
updated 21 months ago by ★ 1.8k • written 21 months ago by ▴ 50
0
votes
2
replies
397
views
How to find mutations uniqueness in different resources/databases?
mutation databases clinical
updated 22 months ago by ★ 5.1k • written 22 months ago by ▴ 140
7
votes
8
replies
487
views
Blast an organism against a downloaded database
BLAST ncbi databases Nanopore
updated 2.0 years ago by ★ 13k • written 2.0 years ago by ▴ 20
4
votes
4
replies
4.8k
views
Downloading all eucaryote mitochondrial genomes
dna mitochondrion databases
updated 2.1 years ago by 20 • written 7.2 years ago by 11k
0
votes
0
replies
437
views
AnnotationDbi: merge database and GO terms
GO enrichment databases Bioconductor R
2.1 years ago by trueflyingsheep • 0
5
votes
2
replies
853
views
Searching and filtering uniclust databases
uniclust protein databases
updated 2.3 years ago by ★ 2.0k • written 2.3 years ago by ▴ 150
0
votes
0
replies
413
views
Are there any other reference alingnment bases than Balibase?
Balibase alignment reference databases
2.6 years ago by MichaelTrev ▴ 10
2
votes
3
replies
925
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How to collect SNP dataset from databases for SNP analysis?
SNP databases
updated 2.7 years ago by 138k • written 2.8 years ago by ▴ 30
3
votes
6
replies
1.2k
views
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
uniprot databases parsing python api
updated 2.8 years ago by ★ 2.7k • written 2.8 years ago by • 0
2
votes
2
replies
969
views
Is there a database of phylogenetic information?
Phylogeny Databases
updated 2.9 years ago by 9.9k • written 2.9 years ago by ▴ 60
0
votes
0
replies
511
views
Rice -omics data and annotation resources
rice omics databases PPI
3.0 years ago by lessismore ★ 1.1k
8
votes
7
replies
770
views
Best Bioinformatics Tools & Databases Targeting Genetics Disorders
bioinformatics genetics_disorders databases tools
updated 3.0 years ago by ★ 5.1k • written 3.0 years ago by ▴ 40
0
votes
3
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901
views
how to compare two ppi databases ?
ppi databases protei protein interaction
3.1 years ago by muntadhar.zahid • 0
6
votes
4
replies
1.8k
views
How to get 1000 Genomes data in bulk?
next-gen 1000-genomes databases api
updated 3.1 years ago by 77k • written 3.1 years ago by ▴ 40
0
votes
3
replies
897
views
Gene (mRNA) - Protein Interaction databases and prediction
ppi protein gene mrna databases
updated 3.2 years ago by ▴ 160 • written 3.2 years ago by ▴ 290
6
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4
replies
1.4k
views
free DATABASE FOR SNP's for diabetes mellitus 2
snp diabetes mellitus databases
3.2 years ago by neilgupte7 • 0
1
vote
1
reply
767
views
Retrieval of RNA-Seq data related to TNBC from all databases.
databases RNA-Seq data TNBC
updated 3.4 years ago by 77k • written 3.4 years ago by ▴ 100
0
votes
2
replies
709
views
Database for extremophilies
extremophilic bacteria archaea databases
3.4 years ago by nohaanwar • 0
0
votes
0
replies
620
views
Microscope/Genoscope RESTful API
rest api mage genoscope databases
3.4 years ago by rororo • 0
5
votes
5
replies
814
views
Help exploring unknown region
gene ensembl databases function prediction Forum
updated 3.6 years ago by 22k • written 3.6 years ago by • 0
0
votes
1
reply
675
views
Is there a database of proteins and their functional residues?
Transcription Functional Domain Proteins Databases
updated 3.7 years ago by ▴ 960 • written 3.7 years ago by • 0
0
votes
0
replies
776
views
Promoters for liver sinusoidal endothelial cells
Databases promoter LSECs ENCODE NCBIGEO
4.0 years ago by LNA ▴ 30
4
votes
10
replies
3.1k
views
NGS data storage and management
next-gen NGS databases genome browsers
4.1 years ago by olavur ▴ 140
1
vote
4
replies
854
views
brain scan databases
databases imaging
updated 4.1 years ago by 25k • written 4.1 years ago by ▴ 90
1
vote
3
replies
1.1k
views
Does anyone know good open data sources for metagenomic data linked to a given condition?
metagenomics databases open data
updated 4.2 years ago by ▴ 100 • written 4.2 years ago by ▴ 60
0
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0
replies
1.4k
views
Job: Bioinformatics Data Engineer position at Partners Personalized Medicine , Cambridge MA
python Software development databases Job
4.5 years ago by hns ▴ 150
5
votes
1
reply
2.1k
views
Where to find canonical versions of 18S sequences?
rrna 18S databases
updated 4.6 years ago by ▴ 30 • written 6.4 years ago by 3.2k
0
votes
5
replies
820
views
Forum: What to do about moribund databases
databases updating Forum
4.6 years ago by cdsouthan ★ 1.9k
0
votes
1
reply
1.3k
views
Tool: Convert Panther HMMs from binary to ascii format to use hmmscan
HMMs HMMER Databases Tool
4.8 years ago by cavelandiah • 0
1
vote
3
replies
1.0k
views
Automatically naming protein sequences based on homology
Protein Annotation Databases Homology Ortholog
4.9 years ago by wl284 ▴ 70
4
votes
1
reply
1.7k
views
What does the number after the dot in a PFAM accession mean?
pfam databases accession
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 40
1
vote
1
reply
1.8k
views
Databases and annotation of translocations
translocations ngs cancer databases SV
updated 5.5 years ago by ★ 3.9k • written 5.5 years ago by ▴ 270
4
votes
4
replies
1.6k
views
Is there an equivalent of Biopython for Java?
java biopython python databases
updated 5.6 years ago by 138k • written 5.6 years ago by ▴ 20
50 results • Page 1 of 1
Recent Votes
Comment: Weird error from BWA and BOWTIE2
C: Sequence Length Distribution From A Fastq File
Answer: How can I extract upstream regions in fasta for all blastx hits locally performe
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
Comment: Beginner problem: installed python3.7.12 but py_available() return FALSE
A: Automatic Outlier Detection for RNA-seq data
A: ATAC-seq sample normalization (quantil normalization)
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Recent Replies
Comment: Importing multiple datasets into one folder by Mensur Dlakic ★ 13k
Are you interested in moving all `.fastq` files from various folders into one? Because that can be done with a single command, but not sure…
Comment: Beginner problem: install python3.7.12 but py_available() still return FALSE by Ram 34k
Please do not delete the post after it has received feedback.
Comment: How can I know the BLAST percentage from kraken2 files ? by h.mon 33k
You can't. In no moment whatsoever Kraken2 performs an alignment. Morever, BLAST is BLAST, Kraken2 is Kraken2, they are not related and p…
Comment: Importing multiple datasets into one folder by GenoMax 107k
Galaxy specific questions are best asked on their dedicated support forum: https://help.galaxyproject.org/
Comment: circulating toumor DNA by GenoMax 107k
Since all cells shed [** free DNA**][1] that circulates (`cfDNA`) (including tumor cells) I don't know if there needs to be a separate data…
Comment: Automatic Outlier Detection for RNA-seq data by Kevin Blighe 77k
There is actually, well, a sort of citation off the top of my head. Please see the PLINK documentation (section '*Outlier detection diagnos…
Answer: Batch effects by swbarnes2 11k
It's always safest to get raw data and normalize it yourself. If one dataset is control, and the other is not, there is no magic way to …
Comment: GREP from multiFasta file and keep headers by Pierre Lindenbaum 138k
your command line with `grep` **implies** that each record in your fasta file takes only two line (?). One line for the header, and one lin…
Answer: In what way should cellranger count be performed , when there are multiple runs by swbarnes2 11k
If you did **one** library prep and ran that one library prep multiple times, it is probably easiest to combine the fastqs (make sure to gi…
Comment: Splice aware vs splice unaware aligners? by swbarnes2 11k
I think for time's sake a not-splice aware aligner isn't going to search horribly far away for the other half of a read, while a splice-awa…
Comment: Beginner problem: installed python3.7.12 but py_available() return FALSE by Sashu • 0
Anyway, thanks your reply!
Comment: Automatic Outlier Detection for RNA-seq data by simplitia ▴ 60
@kevin thank is a great answer. We are having the same issue with outliers. With the 2nd part using > 3 SD; do you have a reference for …
Comment: How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to by Papyrus ★ 1.3k
Take a look at the [DiffBind][1] R package (which internally uses `DESeq2`, or `edgeR`), the tutorial [vignette][2] is quite extensive. …
Comment: Beginner problem: installed python3.7.12 but py_available() return FALSE by Sashu • 0
I forget to tell that I have followed the error message but this problem still existed...
Comment: Beginner problem: installed python3.7.12 but py_available() return FALSE by jared.andrews07 ★ 11k
Follow the error message. Allow reticulate to handle the python environment itself.
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