Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
70 results • Page
1 of 2
Sort: Rank
Rank
Views
Votes
Replies
Filtering for tag:
databases
•
reset
1
vote
1
reply
85
views
Compare different microbial databases
comparison
microbial
databases
updated 9 days ago by
GenoMax
99k • written 9 days ago by
Molinia
▴ 10
4
votes
2
replies
156
views
What Phenotype databases do you recommend for searching genes related to diseases?
disease
phenotype
databases
updated 6 weeks ago by
Pancreas Pratik
▴ 120 • written 6 weeks ago by
gjespitia
▴ 10
0
votes
0
replies
95
views
database about population data of aquatic animal organisms
databases
6 weeks ago by
eridanus
▴ 30
0
votes
0
replies
139
views
News:
Cellosaurus release 37 is available
knowledgebase
databases
news
cell line
News
11 weeks ago by
Amos Bairoch
▴ 110
0
votes
0
replies
246
views
Job:
Full-stack Developer to incorporate within the EUCANCan project (Barcelona, Spain)
databases
variants
job
Job
4 months ago by
bernatgel
★ 2.9k
2
votes
5
replies
1.6k
views
rna seq public databases
RNA-Seq
databases
5 months ago by
David_emir
▴ 390
1
vote
1
reply
169
views
Expression of miRNAs in different tissues
databases
updated 6 months ago by
ATpoint
47k • written 6 months ago by
aminijavad4
• 0
0
votes
2
replies
215
views
Microbial protein BLAST
blast
microbial proteins
biopython
databases
updated 8 months ago by
user_without_id
▴ 150 • written 8 months ago by
orpita.d
• 0
1
vote
2
replies
223
views
Where do I find viral genomes that can attack a particular phylum
databases
virus
crustaceans
genomes
10 months ago by
Amaranta Remedios
▴ 10
1
vote
1
reply
253
views
How to identify domains / proteins physically interacting with a specific drug?
proteins
domains
metformin
databases
networks
12 months ago by
martonmarcelllaszlo
• 0
11
votes
5
replies
1.5k
views
Tool:
A resource with diverse databases and tools for SARS-CoV-2 (COVID-19) bioinformatics -- Updates
COVID-19
Databases
Corona
Tool
SARS-CoV-2
12 months ago by
Michael
▴ 210
1
vote
0
replies
691
views
The best way to download target-drug data in csv format from ChEMBL
ChEMBL
databases
12 months ago by
little_more
▴ 40
0
votes
2
replies
723
views
What are Metatranscriptomics databases?
metatranscriptomics
metagenomics
databases
updated 15 months ago by
andres.firrincieli
★ 1.2k • written 15 months ago by
mrj
▴ 20
0
votes
2
replies
300
views
How to find mutations uniqueness in different resources/databases?
mutation
databases
clinical
updated 17 months ago by
Denise CS
★ 5.1k • written 17 months ago by
DanielC
▴ 140
7
votes
8
replies
409
views
Blast an organism against a downloaded database
BLAST
ncbi
databases
Nanopore
updated 19 months ago by
Mensur Dlakic
★ 10k • written 19 months ago by
caro-ca
▴ 20
4
votes
4
replies
4.5k
views
Downloading all eucaryote mitochondrial genomes
dna
mitochondrion
databases
updated 20 months ago by
Biostar
20 • written 6.7 years ago by
Eric Normandeau
11k
0
votes
0
replies
311
views
AnnotationDbi: merge database and GO terms
GO enrichment
databases
Bioconductor
R
20 months ago by
trueflyingsheep
• 0
5
votes
2
replies
657
views
Searching and filtering uniclust databases
uniclust
protein
databases
updated 22 months ago by
AK
★ 2.0k • written 22 months ago by
max_19
▴ 150
0
votes
0
replies
339
views
Are there any other reference alingnment bases than Balibase?
Balibase
alignment
reference
databases
2.1 years ago by
MichaelTrev
▴ 10
2
votes
3
replies
806
views
How to collect SNP dataset from databases for SNP analysis?
SNP
databases
updated 2.3 years ago by
Pierre Lindenbaum
135k • written 2.3 years ago by
arr234
▴ 20
3
votes
6
replies
1.1k
views
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
uniprot
databases
parsing
python
api
updated 2.3 years ago by
vkkodali
★ 2.5k • written 2.3 years ago by
jg
• 0
2
votes
2
replies
809
views
Is there a database of phylogenetic information?
Phylogeny
Databases
updated 2.5 years ago by
5heikki
9.6k • written 2.5 years ago by
michau
▴ 50
0
votes
0
replies
422
views
Rice -omics data and annotation resources
rice
omics
databases
PPI
2.6 years ago by
lessismore
★ 1.1k
8
votes
7
replies
670
views
Best Bioinformatics Tools & Databases Targeting Genetics Disorders
bioinformatics
genetics_disorders
databases
tools
updated 2.6 years ago by
Denise CS
★ 5.1k • written 2.6 years ago by
BioICoder
▴ 40
0
votes
3
replies
795
views
how to compare two ppi databases ?
ppi
databases
protei protein interaction
2.6 years ago by
muntadhar.zahid
• 0
6
votes
4
replies
1.5k
views
How to get 1000 Genomes data in bulk?
next-gen
1000-genomes
databases
api
updated 2.7 years ago by
Kevin Blighe
72k • written 2.7 years ago by
kynnjo
▴ 40
0
votes
3
replies
795
views
Gene (mRNA) - Protein Interaction databases and prediction
ppi
protein
gene
mrna
databases
updated 2.7 years ago by
c.chakraborty
▴ 160 • written 2.7 years ago by
'
▴ 280
6
votes
4
replies
1.2k
views
free DATABASE FOR SNP's for diabetes mellitus 2
snp
diabetes mellitus
databases
2.7 years ago by
neilgupte7
• 0
1
vote
1
reply
673
views
Retrieval of RNA-Seq data related to TNBC from all databases.
databases
RNA-Seq data
TNBC
updated 2.9 years ago by
Kevin Blighe
72k • written 2.9 years ago by
fawazfebin
▴ 100
0
votes
2
replies
583
views
Database for extremophilies
extremophilic
bacteria
archaea
databases
2.9 years ago by
nohaanwar
• 0
0
votes
0
replies
527
views
Microscope/Genoscope RESTful API
rest
api
mage
genoscope
databases
3.0 years ago by
rororo
• 0
5
votes
5
replies
723
views
Help exploring unknown region
gene
ensembl
databases
function prediction
Forum
updated 3.1 years ago by
Emily_Ensembl
22k • written 3.1 years ago by
gpng
• 0
0
votes
1
reply
580
views
Is there a database of proteins and their functional residues?
Transcription
Functional Domain
Proteins
Databases
updated 3.3 years ago by
Hussain Ather
▴ 960 • written 3.3 years ago by
nida.farheen
• 0
0
votes
0
replies
711
views
Promoters for liver sinusoidal endothelial cells
Databases
promoter
LSECs
ENCODE
NCBIGEO
3.5 years ago by
LNA
▴ 30
4
votes
10
replies
2.9k
views
NGS data storage and management
next-gen
NGS
databases
genome browsers
3.6 years ago by
olavur
▴ 130
1
vote
4
replies
763
views
brain scan databases
databases
imaging
updated 3.6 years ago by
Jean-Karim Heriche
24k • written 3.6 years ago by
nkinney06
▴ 70
1
vote
3
replies
1.6k
views
Download UniProt databases via HTTP/HTTPS instead of FTP? (Google Apps Scripts Question)
UniProt
Databases
Google
FTP
sequence
updated 3.6 years ago by
me
▴ 740 • written 3.7 years ago by
parism9
▴ 30
1
vote
3
replies
932
views
Does anyone know good open data sources for metagenomic data linked to a given condition?
metagenomics
databases
open data
updated 3.7 years ago by
erictleung
▴ 100 • written 3.7 years ago by
edward.messick
▴ 60
0
votes
0
replies
1.3k
views
Job:
Bioinformatics Data Engineer position at Partners Personalized Medicine , Cambridge MA
python
Software development
databases
Job
4.0 years ago by
hns
▴ 150
5
votes
1
reply
1.9k
views
Where to find canonical versions of 18S sequences?
rrna
18S
databases
updated 4.1 years ago by
Alex Bel
▴ 30 • written 5.9 years ago by
Pawel Szczesny
3.2k
0
votes
5
replies
755
views
Forum:
What to do about moribund databases
databases
updating
Forum
4.2 years ago by
cdsouthan
★ 1.8k
0
votes
1
reply
1.2k
views
Tool:
Convert Panther HMMs from binary to ascii format to use hmmscan
HMMs
HMMER
Databases
Tool
4.3 years ago by
cavelandiah
• 0
1
vote
3
replies
945
views
Automatically naming protein sequences based on homology
Protein
Annotation
Databases
Homology
Ortholog
4.4 years ago by
wl284
▴ 60
4
votes
1
reply
1.5k
views
What does the number after the dot in a PFAM accession mean?
pfam
databases
accession
updated 4.6 years ago by
Biostar
20 • written 4.8 years ago by
genomeandahalf
▴ 40
1
vote
1
reply
1.7k
views
Databases and annotation of translocations
translocations
ngs
cancer
databases
SV
updated 5.0 years ago by
natasha.sernova
★ 3.8k • written 5.0 years ago by
alons
▴ 270
4
votes
4
replies
1.5k
views
Is there an equivalent of Biopython for Java?
java
biopython
python
databases
updated 5.1 years ago by
Pierre Lindenbaum
135k • written 5.1 years ago by
onemoreuser
▴ 20
4
votes
4
replies
2.1k
views
Best online biological dictionary/glossary?
databases
resources
websites
updated 5.3 years ago by
Michael Dondrup
48k • written 5.3 years ago by
Daniel Neel
▴ 80
5
votes
3
replies
1.5k
views
Looking for phosphoproteomics data for kinase inhibited states
phosphoproteomics
proteomics
kinases
databases
updated 5.4 years ago by
Pedrobeltrao
▴ 140 • written 5.4 years ago by
richard.carr.3rd
▴ 10
0
votes
0
replies
1.5k
views
Chip seq data for sigma factors in e.coli
sigma
chipseq
invitro
databases
5.4 years ago by
geethika.yalamanchili
• 0
6
votes
1
reply
6.3k
views
Can someone give insight into the difference between current gene-function databases?
RNA-Seq
gene
term
pathway
databases
updated 5.5 years ago by
Jean-Karim Heriche
24k • written 5.5 years ago by
VermillionAzure
• 0
70 results • Page
1 of 2
Recent Votes
Comment: RNA-SEQ count data as input for Machine Learning
Answer: RNA-SEQ count data as input for Machine Learning
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
Answer: What Do You Waste Your Time On
C: What Do You Waste Your Time On
What Do You Waste Your Time On
Answer: What Do You Waste Your Time On
Recent Locations •
All
Italy,
just now
Spain,
1 minute ago
United States,
2 minutes ago
United Kingdom,
3 minutes ago
France,
5 minutes ago
USA,
8 minutes ago
Portugal,
9 minutes ago
Recent Awards •
All
Popular Question
to
9606
▴ 320
Great Question
to
Mehmet
▴ 670
Popular Question
to
biobiu
▴ 120
Teacher
to
andrew.j.skelton73
6.2k
Teacher
to
Jean-Karim Heriche
24k
Scholar
to
Devon Ryan
98k
Supporter
to
David_emir
▴ 390
Recent Replies
Answer: How to visualize Multiple Sequence Alignment with python ?
by
Mensur Dlakic
★ 10k
Can't think of a particularly good alignment viewer in python. If you are more interested in result rather than doing it in python, ther…
Comment: Using outgroup in gene family dendograms
by
Mensur Dlakic
★ 10k
> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here? Most definitely no…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Istvan Albert
87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA
by
biobiu
▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position
by
cpad0112
15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Anand Rao
▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position
by
Dunois
▴ 610
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms
by
Rogerio Ribeiro
▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA
by
Zhilong Jia
★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position
by
hugo.avila
▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On
by
ponganta
▴ 160
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On
by
ponganta
▴ 160
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data
by
ponganta
▴ 160
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data
by
Dunois
▴ 610
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data
by
grant.hovhannisyan
★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
Traffic: 1505 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6