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Answer: How to visualize Multiple Sequence Alignment with python ?
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Can't think of a particularly good alignment viewer in python.
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> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here?
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Thanks!
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#!/usr/bin/env python3
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Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
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Here's a little `python` function you can work off of:
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Thank for the fast reponse. The ABC family is not the best example for this question indeed.
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1. Blast directly
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Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
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Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
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By "pooled" data, do you mean data from tissue-specific bulk-RNAseq?
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What exactly do you mean by "pooled" data?
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I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
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