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Showing top results for tag: databases • reset
1
vote
1
reply
65
views
  What is the most convenient way to interact with ncbi?
databases nsbi
updated 6 hours ago by 102k • written 7 hours ago by ▴ 20
7
votes
6
replies
356
views
  Good annotation databases for a VCF file (somatic variants)
VCF ANNOVAR somatic databases annotation
updated 6 days ago by 5.6k • written 23 days ago by ▴ 10
4
votes
3
replies
245
views
  What Phenotype databases do you recommend for searching genes related to diseases?
disease phenotype databases
updated 6 weeks ago by ▴ 20 • written 3 months ago by ▴ 10
1
vote
1
reply
157
views
  Compare different microbial databases
comparison microbial databases
updated 11 weeks ago by 102k • written 11 weeks ago by ▴ 10
0
votes
0
replies
128
views
  database about population data of aquatic animal organisms
databases
4 months ago by eridanus ▴ 30
0
votes
0
replies
201
views
News:  Cellosaurus release 37 is available
knowledgebase databases news cell line News
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
287
views
Job:  Full-stack Developer to incorporate within the EUCANCan project (Barcelona, Spain)
databases variants job Job
7 months ago by bernatgel ★ 3.0k
2
votes
5
replies
1.6k
views
  rna seq public databases
RNA-Seq databases
7 months ago by David_emir ▴ 390
1
vote
1
reply
207
views
  Expression of miRNAs in different tissues
databases
updated 8 months ago by 50k • written 8 months ago by • 0
0
votes
2
replies
262
views
  Microbial protein BLAST
blast microbial proteins biopython databases
updated 11 months ago by ▴ 150 • written 11 months ago by • 0
1
vote
2
replies
260
views
  Where do I find viral genomes that can attack a particular phylum
databases virus crustaceans genomes
12 months ago by Amaranta Remedios ▴ 10
1
vote
1
reply
292
views
  How to identify domains / proteins physically interacting with a specific drug?
proteins domains metformin databases networks
14 months ago by martonmarcelllaszlo • 0
11
votes
5
replies
1.5k
views
Tool:  A resource with diverse databases and tools for SARS-CoV-2 (COVID-19) bioinformatics -- Updates
COVID-19 Databases Corona Tool SARS-CoV-2
14 months ago by Michael ▴ 230
1
vote
0
replies
777
views
  The best way to download target-drug data in csv format from ChEMBL
ChEMBL databases
15 months ago by little_more ▴ 40
0
votes
2
replies
814
views
  What are Metatranscriptomics databases?
metatranscriptomics metagenomics databases
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 30
0
votes
2
replies
337
views
  How to find mutations uniqueness in different resources/databases?
mutation databases clinical
updated 19 months ago by ★ 5.1k • written 19 months ago by ▴ 140
7
votes
8
replies
442
views
  Blast an organism against a downloaded database
BLAST ncbi databases Nanopore
updated 21 months ago by ★ 11k • written 21 months ago by ▴ 20
4
votes
4
replies
4.6k
views
  Downloading all eucaryote mitochondrial genomes
dna mitochondrion databases
updated 22 months ago by 20 • written 6.9 years ago by 11k
0
votes
0
replies
358
views
  AnnotationDbi: merge database and GO terms
GO enrichment databases Bioconductor R
22 months ago by trueflyingsheep • 0
5
votes
2
replies
726
views
  Searching and filtering uniclust databases
uniclust protein databases
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 150
0
votes
0
replies
366
views
  Are there any other reference alingnment bases than Balibase?
Balibase alignment reference databases
2.3 years ago by MichaelTrev ▴ 10
2
votes
3
replies
857
views
  How to collect SNP dataset from databases for SNP analysis?
SNP databases
updated 2.5 years ago by 136k • written 2.5 years ago by ▴ 20
3
votes
6
replies
1.1k
views
  UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
uniprot databases parsing python api
updated 2.5 years ago by ★ 2.6k • written 2.5 years ago by • 0
2
votes
2
replies
881
views
  Is there a database of phylogenetic information?
Phylogeny Databases
updated 2.7 years ago by 9.8k • written 2.7 years ago by ▴ 50
0
votes
0
replies
465
views
  Rice -omics data and annotation resources
rice omics databases PPI
2.8 years ago by lessismore ★ 1.1k
8
votes
7
replies
708
views
  Best Bioinformatics Tools & Databases Targeting Genetics Disorders
bioinformatics genetics_disorders databases tools
updated 2.8 years ago by ★ 5.1k • written 2.8 years ago by ▴ 40
0
votes
3
replies
834
views
  how to compare two ppi databases ?
ppi databases protei protein interaction
2.8 years ago by muntadhar.zahid • 0
6
votes
4
replies
1.6k
views
  How to get 1000 Genomes data in bulk?
next-gen 1000-genomes databases api
updated 2.9 years ago by 74k • written 2.9 years ago by ▴ 40
0
votes
3
replies
837
views
  Gene (mRNA) - Protein Interaction databases and prediction
ppi protein gene mrna databases
updated 2.9 years ago by ▴ 160 • written 2.9 years ago by ▴ 280
6
votes
4
replies
1.3k
views
  free DATABASE FOR SNP's for diabetes mellitus 2
snp diabetes mellitus databases
2.9 years ago by neilgupte7 • 0
1
vote
1
reply
720
views
  Retrieval of RNA-Seq data related to TNBC from all databases.
databases RNA-Seq data TNBC
updated 3.1 years ago by 74k • written 3.1 years ago by ▴ 100
0
votes
2
replies
620
views
  Database for extremophilies
extremophilic bacteria archaea databases
3.1 years ago by nohaanwar • 0
0
votes
0
replies
558
views
  Microscope/Genoscope RESTful API
rest api mage genoscope databases
3.2 years ago by rororo • 0
5
votes
5
replies
763
views
  Help exploring unknown region
gene ensembl databases function prediction Forum
updated 3.3 years ago by 22k • written 3.3 years ago by • 0
0
votes
1
reply
622
views
  Is there a database of proteins and their functional residues?
Transcription Functional Domain Proteins Databases
updated 3.4 years ago by ▴ 960 • written 3.4 years ago by • 0
0
votes
0
replies
739
views
  Promoters for liver sinusoidal endothelial cells
Databases promoter LSECs ENCODE NCBIGEO
3.7 years ago by LNA ▴ 30
4
votes
10
replies
2.9k
views
  NGS data storage and management
next-gen NGS databases genome browsers
3.8 years ago by olavur ▴ 140
1
vote
4
replies
800
views
  brain scan databases
databases imaging
updated 3.8 years ago by 24k • written 3.8 years ago by ▴ 90
1
vote
3
replies
1.7k
views
  Download UniProt databases via HTTP/HTTPS instead of FTP? (Google Apps Scripts Question)
UniProt Databases Google FTP sequence
updated 3.8 years ago by ▴ 740 • written 3.8 years ago by ▴ 30
1
vote
3
replies
976
views
  Does anyone know good open data sources for metagenomic data linked to a given condition?
metagenomics databases open data
updated 3.9 years ago by ▴ 100 • written 3.9 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Job:  Bioinformatics Data Engineer position at Partners Personalized Medicine , Cambridge MA
python Software development databases Job
4.2 years ago by hns ▴ 150
5
votes
1
reply
2.0k
views
  Where to find canonical versions of 18S sequences?
rrna 18S databases
updated 4.3 years ago by ▴ 30 • written 6.1 years ago by 3.2k
0
votes
5
replies
785
views
Forum:  What to do about moribund databases
databases updating Forum
4.3 years ago by cdsouthan ★ 1.8k
0
votes
1
reply
1.3k
views
Tool:  Convert Panther HMMs from binary to ascii format to use hmmscan
HMMs HMMER Databases Tool
4.5 years ago by cavelandiah • 0
1
vote
3
replies
987
views
  Automatically naming protein sequences based on homology
Protein Annotation Databases Homology Ortholog
4.6 years ago by wl284 ▴ 70
4
votes
1
reply
1.6k
views
  What does the number after the dot in a PFAM accession mean?
pfam databases accession
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 40
1
vote
1
reply
1.7k
views
  Databases and annotation of translocations
translocations ngs cancer databases SV
updated 5.2 years ago by ★ 3.8k • written 5.2 years ago by ▴ 270
4
votes
4
replies
1.5k
views
  Is there an equivalent of Biopython for Java?
java biopython python databases
updated 5.3 years ago by 136k • written 5.3 years ago by ▴ 20
4
votes
4
replies
2.1k
views
  Best online biological dictionary/glossary?
databases resources websites
updated 5.5 years ago by 49k • written 5.5 years ago by ▴ 80
5
votes
3
replies
1.6k
views
  Looking for phosphoproteomics data for kinase inhibited states
phosphoproteomics proteomics kinases databases
updated 5.6 years ago by ▴ 140 • written 5.6 years ago by ▴ 10
50 results • Page 1 of 1
Recent Votes
A: Blast - Formatting Output
A: Blast - Formatting Output
Answer: Which R function can be used for intersection of genomic coordinates from one fi
Answer: Which R function can be used for intersection of genomic coordinates from one fi
Comment: Hello everyone.How can i do miRNAmeta analysis in plant?thanks alot
Answer: Which R function can be used for intersection of genomic coordinates from one fi
Answer: How to Speed Up BLASTp
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Recent Awards • All
Commentator to liorglic ▴ 390
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Recent Replies
Comment: De Novo Assembly from Oligos by liorglic ▴ 390
SPAdes should work in this case, so there's either something wrong with your data, or you're using them wrong. Please provide the SPAdes/ME…
Comment: bcftools plugin fill-tags with functions by diana.cornejo • 0
Thank you for helping me out!
Comment: bcftools plugin fill-tags with functions by diana.cornejo • 0
Thank you! I'll look at it
Comment: pearson correlation between lncRNA and mRNA by MS ▴ 20
Beacause when I checked txt files are not seperated anything I leaved it empty. Actually when I check the input data in R it looks okay.
Comment: pearson correlation between lncRNA and mRNA by Ram 34k
If there are 36 columns, they must be separated by something. Why is your `sep` an empty string?
Comment: pearson correlation between lncRNA and mRNA by MS ▴ 20
Thank you for your reply. the 2 files are txt files including 36 column both of them but row numbers are different and it gives lenght of x…
Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN by Pancreas Pratik ▴ 300
I think you might just simply have to remove the underscores `_` You could do that manually or in terminal like so: cat yourgenes.txt…
Comment: How to Speed Up BLASTp by GenoMax 102k
> considering building a local database only including protein sequences > from viruses. I think you are best off getting the viral protei…
Comment: Adding p value to Vlnplot in Seurat by antonioggsousa ★ 2.1k
Hi @jvbeltran0122, As far as I remember by default the function `stat_compare_means()` ([link](https://rpkgs.datanovia.com/ggpubr/referen…
Comment: How to Speed Up BLASTp by twangxxx • 0
It's over two hours since I initiated a single sequence blastp against all nr databases as I mentioned in my previous reply, and It hasn't …
Comment: How to Speed Up BLASTp by h.mon 32k
You can try the variable `$PBS_NUM_PPN` (number of CPUs per node): blastp -db nr -query proteins.fa -outfmt 6 -out ./output.txt \ …
Comment: Bioinformaticist or computational biologist opportunity at Pattern Ag (CA, USA) by Danielle • 0
Thanks for the suggestion
Comment: De Novo Assembly from Oligos by GenoMax 102k
Perhaps `tadpole.sh` from [**BBMap suite**][1] may work. [**Tadpole guide**][2] is available. [1]: https://sourceforge.net/projects/…
Answer: Which R function can be used for intersection of genomic coordinates from one fi by seidel 8.0k
For R the GenomicRanges package is made for this (as mentioned by @jared.andrews07). library(GenomicRanges) library(rtracklayer…
Comment: RELATED NEIGHBOURING GENES IN A PATHWAY by Ram 34k
All caps is rude. Please edit your post title, and also add details on what you've tried so far.
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