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64 results • Page
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Filtering for tag:
david
•
reset
0
votes
0
replies
81
views
DAVID Bioinformatics tool
David
data visulization
29 days ago by
joyeeta.dutta.in
• 0
3
votes
3
replies
157
views
Count, LT, PH, PT Column in Functional Annotation Chart of DAVID
DAVID
GSEA
updated 12 weeks ago by
Asaf
8.6k • written 12 weeks ago by
nickhir
▴ 30
1
vote
2
replies
284
views
Functional enrichment analysis of bacteria
GO enrichment
DAVID
bacteria
clusterProfiler
R
updated 3 months ago by
damki
▴ 10 • written 4 months ago by
mickey_95
▴ 30
1
vote
6
replies
271
views
DAVID clustering using R
R
DAVID
7 months ago by
user.bioinfo
• 0
67
votes
68
replies
10k
views
16 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
Tutorial
david
updated 10 days ago by
krushnach80
▴ 900 • written 3.1 years ago by
Kevin Blighe
72k
0
votes
3
replies
258
views
Is it possible to use DAVID enrichment with single ranked list of genes?
DAVID
enrichment
updated 9 months ago by
EagleEye
6.8k • written 9 months ago by
tgutman100
• 0
2
votes
7
replies
879
views
Dotplot of selected GO terms with z-score via ggplot2
RNA-Seq
ggplot2
david
GO
11 months ago by
lucatucciarone
▴ 50
1
vote
2
replies
939
views
Plot biological process of DAVID analysis in a barplot
david
biological process
plot
updated 11 months ago by
ashish
▴ 640 • written 11 months ago by
Silvia Gonzalez
▴ 20
0
votes
1
reply
285
views
Enrichment Analysis in DAVID
RNA-Seq
enrichment analysis
DAVID
updated 11 months ago by
colin.kern
▴ 970 • written 11 months ago by
ek699
• 0
1
vote
1
reply
415
views
Compact visualisation of enrichment analysis
RNA-Seq
gene ontology
PANTHER
DAVID
REVIGO
updated 14 months ago by
grant.hovhannisyan
★ 2.1k • written 14 months ago by
Arindam Ghosh
▴ 360
0
votes
0
replies
757
views
Explaining DAVID's 0.1 EASE Score
david
EASE
16 months ago by
kehoe
▴ 20
11
votes
7
replies
1.4k
views
Graphical presentation of STRING protein-protein network and gene ontology
STRING
DAVID
gene-ontology
interaction-network
updated 17 months ago by
Leite
★ 1.1k • written 17 months ago by
Farah
▴ 70
3
votes
5
replies
1.7k
views
DAVID gene ontology using dotplot
R
gene
DAVID
dotplot
updated 17 months ago by
Leite
★ 1.1k • written 17 months ago by
alepaolini86
▴ 10
2
votes
3
replies
1.2k
views
Clustering use GO analysis (DAVID) Heatmap between different groups
RNA-Seq
Heatmap
DAVID
gene
updated 22 months ago by
Kevin Blighe
72k • written 22 months ago by
khoang3
• 0
6
votes
9
replies
788
views
Getting this specific information from gene- annotation enrichment analysis
DAVID
R
PANTHER
annotation
updated 22 months ago by
annie.wong
▴ 20 • written 22 months ago by
A
★ 3.9k
7
votes
5
replies
872
views
Forum:
Which is better: webgestalt vs david?
webgestalt
david
Forum
updated 2.1 years ago by
Kevin Blighe
72k • written 2.1 years ago by
Shicheng Guo
★ 8.6k
1
vote
2
replies
916
views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID
pathway-analysis
updated 2.1 years ago by
h.mon
32k • written 2.1 years ago by
m98
▴ 300
0
votes
0
replies
585
views
Pathway enrichment analysis bacterial genome
R
kegg
clusterprofiler
david
metacyc
updated 2.1 years ago by
Biostar
20 • written 2.2 years ago by
David
▴ 200
0
votes
4
replies
556
views
Genbank GI accession format for DAVID input
DAVID
Functional Analysis
updated 2.1 years ago by
Istvan Albert
87k • written 2.1 years ago by
jfo
▴ 40
0
votes
0
replies
615
views
Functional annotation chart from DAVID: Analogs or direct affiliations?
david
annotation
functional
2.1 years ago by
LRStar
▴ 190
3
votes
8
replies
4.6k
views
DAVID Fisher Exact Test contingency table
pathway
stats
david
updated 2.8 years ago by
Poorya Parvizi
▴ 60 • written 3.9 years ago by
igor
12k
4
votes
6
replies
739
views
How to find the functions of Reactome pathways?
Pathways
reactome pathways
DAVID
updated 2.9 years ago by
Denise CS
★ 5.1k • written 2.9 years ago by
Chaimaa
▴ 250
2
votes
2
replies
797
views
Gene enrichment analysis
gene_enrichment
david
blast2go
uniprot
updated 3.0 years ago by
Buffo
★ 1.8k • written 3.0 years ago by
Ambika
▴ 40
1
vote
9
replies
2.5k
views
NM_transcript ID gene identification
rna-seq
gene ontology
panther
refseq
DAVID
updated 3.1 years ago by
GenoMax
99k • written 3.1 years ago by
Abiterkuile
▴ 20
3
votes
13
replies
4.4k
views
DAVID functional Analysis and its visualization of GO terms using Bar plot
DAVID
GO term
visualization
updated 3.2 years ago by
Kevin Blighe
72k • written 3.2 years ago by
lawarde.ankita1
▴ 60
2
votes
0
replies
983
views
Meaning of UNIGENE_EST_QUARTILE terms in DAVID functional annotation
functional annotation
DAVID
UniGene
expression
EST
3.2 years ago by
mikus_ja
▴ 20
2
votes
3
replies
8.0k
views
DAVID: p-value and Benjamini correction interpretation
DAVID
Benjamini correction
functional annotation
updated 3.2 years ago by
arta
▴ 620 • written 3.2 years ago by
Mel
• 0
2
votes
2
replies
2.1k
views
Display the results obtained from DAVID and g:profiler functional annotation tools
DAVID
functional annotation
g:profiler
3.3 years ago by
The Last Word
▴ 200
2
votes
1
reply
788
views
Get gene ids from probe ids (my idea is right or wrong)
probe
blast
UNIPROT
ENTREZ
DAVID
3.3 years ago by
The Last Word
▴ 200
1
vote
3
replies
1.9k
views
Gene set enrichment analysis vs functional enrichment analysis?
GSEA
DAVID
Functional enrichment analysis
updated 3.4 years ago by
jared.andrews07
9.1k • written 3.4 years ago by
justp
▴ 10
0
votes
2
replies
3.2k
views
The way to get the all p-value of functionally annotated categories from DAVID?
DAVID
GO
updated 3.4 years ago by
Biostar
20 • written 6.9 years ago by
kim
▴ 70
1
vote
2
replies
1.8k
views
DAVID gene enrichment - multiple Entrez IDs per gene symbol, what to do?
DAVID
GO
Gene-enrichment
3.4 years ago by
BioBing
▴ 130
9
votes
5
replies
9.7k
views
Questions about DAVID
DAVID
updated 3.5 years ago by
moldach
▴ 130 • written 5.3 years ago by
hxlei613
▴ 90
3
votes
6
replies
1.8k
views
DAVID not accepting locus_tag identifiers. Alternatives?
DAVID
locus_tag
3.5 years ago by
ThePresident
▴ 160
3
votes
5
replies
1.5k
views
How to perform functional gene clustering?
DAVID
clustering
updated 3.5 years ago by
Kevin Blighe
72k • written 3.5 years ago by
ThePresident
▴ 160
0
votes
1
reply
787
views
GI identifiers lost
identifier
GI
protein
conversion
DAVID
3.5 years ago by
albert.rafels
• 0
0
votes
1
reply
3.4k
views
What type of identifiers are GENE IDs of s. pombe to use in DAVID?
Gene ID
GENE ID
s. pombe
DAVID
updated 3.8 years ago by
Carine
• 0 • written 6.5 years ago by
Parham
★ 1.5k
2
votes
10
replies
1.5k
views
DAVID and Panther can't identify certain Uniprot Accessions
DAVID
UniProt
Panther
Gene Annotation
updated 4.0 years ago by
Elisabeth Gasteiger
★ 1.9k • written 4.0 years ago by
shpak.max
• 0
3
votes
16
replies
2.3k
views
Transform from uniprot accesion to entrez gene id
R
uniprot
entrez
biocluster
david
4.0 years ago by
felipebihaiek
• 0
3
votes
5
replies
1.5k
views
List of GO terms that are overrepresented in a geneset
gene
gene ontology
GO
DAVID
updated 4.1 years ago by
EagleEye
6.8k • written 4.1 years ago by
o3964fn4n
• 0
7
votes
5
replies
3.4k
views
David Gene Id
David
Gene_id
Annotation
updated 4.2 years ago by
EagleEye
6.8k • written 5.1 years ago by
Kritika
▴ 260
8
votes
3
replies
1.2k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
david
go
ontology
pathway
enrichment
News
4.5 years ago by
pld
4.9k
0
votes
4
replies
1.7k
views
Geneset enrichment in non-model organism with DAVID
DAVID
geneset enrichment
updated 4.6 years ago by
Pappu
★ 1.9k • written 4.6 years ago by
pbigbig
▴ 210
0
votes
0
replies
999
views
DAVID Web Services, Perl Client troubleshooting
software error
Perl
DAVID
SOAP
4.6 years ago by
adam.faranda
▴ 80
6
votes
8
replies
3.1k
views
Inconsistent numbers when using Kegg pathway analysis via DAVID?
DAVID
kegg
updated 4.7 years ago by
EagleEye
6.8k • written 5.8 years ago by
alnchalker
▴ 20
1
vote
3
replies
1.3k
views
DAVID inconsistent results
david
4.7 years ago by
mozart.marins12
▴ 10
16
votes
9
replies
2.3k
views
Most up-to-date Gene Ontology [GO] analysis?
gene ontology
enrichment
genes
update
david
updated 4.7 years ago by
LLTommy
★ 1.2k • written 4.7 years ago by
O.rka
▴ 290
5
votes
6
replies
1.7k
views
Can't access DAVID
DAVID
updated 4.8 years ago by
Biostar
20 • written 5.8 years ago by
komal.rathi
★ 3.7k
14
votes
20
replies
4.8k
views
10 follow
Is the DAVID knowledgebase not updated any more?
DAVID
pathway analysis
gene set enrichment
4.9 years ago by
Christian
★ 3.0k
12
votes
9
replies
3.1k
views
Forum:
Finally the much awaited DAVID update has taken place. Thoughts in the community will be appreciated
DAVID
GO
gene ontology
forum
discussion
Forum
updated 4.9 years ago by
Pierre Lindenbaum
135k • written 4.9 years ago by
ivivek_ngs
★ 5.1k
64 results • Page
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Recent Votes
Answer: Creating reference genome for mapping and then selecting
Comment: Creating reference genome for mapping and then selecting
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Answer: Tool to find chromosome specific repeats
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Recent Replies
Answer: Expression of gene of interest across conditions in single-cell data
by
jared.andrews07
9.1k
Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
Comment: Extracting only tumor samples from Single cell RNASeq
by
jared.andrews07
9.1k
You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
Comment: Cell composition in each condition of single cell data
by
paria.alipour
▴ 20
Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
Answer: bbmap, mapq and uniquelly mapped reads filtering
by
GenoMax
99k
Many threads exist that show how to extract uniquely mapped reads. Here are a couple of examples:<br> https://www.biostars.org/p/276216/#27…
Comment: Cell composition in each condition of single cell data
by
rpolicastro
5.1k
The images seem to be missing from your post
Comment: Limma experiment design and making contrasts
by
kra277
• 0
Thank you very much for this. Much appreciated.
Comment: Limma experiment design and making contrasts
by
Kevin Blighe
72k
Hi, these follow the same principles as formulae used in regression modelling, so, you may want to focus on that (when searching). What lim…
Comment: Limma experiment design and making contrasts
by
kra277
• 0
That is very insightful. Thank you very much for the answer. Also, if I may ask, could you please point me to the articles for understandin…
Comment: Keep values from VCF file into Ensembl VEP annotation
by
brunobsouzaa
▴ 510
Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
Comment: Raw read processing using trimmomatic
by
boczniak767
▴ 740
Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
Comment: should stop codon be counted as part of CDS
by
sullis02
• 0
Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
Comment: How do I compare degree and betweenness centrality for different PPI networks?
by
Istvan Albert
87k
I am not all that knowledgeable of Cytoscapes features and scripting capabilities, but if it does not support that operation you can expo…
Comment: Creating reference genome for mapping and then selecting
by
Istvan Albert
87k
you would get the counts as you would get them in any other case, how do you know something maps to chromosome 1 of human genome? Because i…
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