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Showing top results for tag: david • reset
1
vote
1
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108
views
DAVID database for gene ontology
DAVID geneontology
24 days ago by Vaani • 0
0
votes
2
replies
249
views
How to get uniprot ID or protein length from Entrez gene id or gene name?
panther python David uniprot API
4 weeks ago by eranga114 • 0
5
votes
7
replies
911
views
How to find the functions of Reactome pathways?
Pathways reactome pathways DAVID
updated 7 weeks ago by ▴ 280 • written 3.2 years ago by ▴ 250
2
votes
2
replies
183
views
Using DAVID Web Service to classify genes into functional groups
DAVID-Web-Service david
7 weeks ago by langziv ▴ 20
0
votes
5
replies
314
views
DAVID enrichment analysis
DAVID rnaseq
updated 11 weeks ago by ▴ 950 • written 11 weeks ago by ▴ 10
0
votes
0
replies
142
views
DAVID Bioinformatics tool
David data visulization
4 months ago by joyeeta.dutta.in • 0
3
votes
3
replies
250
views
Count, LT, PH, PT Column in Functional Annotation Chart of DAVID
DAVID GSEA
updated 6 months ago by 8.6k • written 6 months ago by ▴ 60
1
vote
2
replies
474
views
Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 7 months ago by ▴ 10 • written 7 months ago by ▴ 40
1
vote
6
replies
414
views
DAVID clustering using R
R DAVID
11 months ago by user.bioinfo • 0
68
votes
68
replies
11k
views
17 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment Tutorial david
updated 4 months ago by ▴ 940 • written 3.5 years ago by 76k
0
votes
3
replies
382
views
Is it possible to use DAVID enrichment with single ranked list of genes?
DAVID enrichment
updated 13 months ago by 7.0k • written 13 months ago by • 0
2
votes
7
replies
1.2k
views
Dotplot of selected GO terms with z-score via ggplot2
RNA-Seq ggplot2 david GO
14 months ago by lucatucciarone ▴ 60
1
vote
2
replies
1.4k
views
Plot biological process of DAVID analysis in a barplot
david biological process plot
updated 15 months ago by ▴ 640 • written 15 months ago by ▴ 20
0
votes
1
reply
455
views
Enrichment Analysis in DAVID
RNA-Seq enrichment analysis DAVID
updated 15 months ago by ▴ 990 • written 15 months ago by • 0
1
vote
1
reply
542
views
Compact visualisation of enrichment analysis
RNA-Seq gene ontology PANTHER DAVID REVIGO
updated 17 months ago by ★ 2.3k • written 17 months ago by ▴ 380
0
votes
0
replies
883
views
Explaining DAVID's 0.1 EASE Score
david EASE
20 months ago by kehoe ▴ 20
11
votes
7
replies
1.8k
views
Graphical presentation of STRING protein-protein network and gene ontology
STRING DAVID gene-ontology interaction-network
updated 21 months ago by ★ 1.1k • written 21 months ago by ▴ 70
3
votes
5
replies
2.1k
views
DAVID gene ontology using dotplot
R gene DAVID dotplot
updated 21 months ago by ★ 1.1k • written 21 months ago by ▴ 10
2
votes
3
replies
1.3k
views
Clustering use GO analysis (DAVID) Heatmap between different groups
RNA-Seq Heatmap DAVID gene
updated 2.2 years ago by 76k • written 2.2 years ago by • 0
6
votes
9
replies
866
views
Getting this specific information from gene- annotation enrichment analysis
DAVID R PANTHER annotation
updated 2.2 years ago by ▴ 20 • written 2.2 years ago by ★ 3.9k
7
votes
5
replies
981
views
Forum: Which is better: webgestalt vs david?
webgestalt david Forum
updated 2.4 years ago by 76k • written 2.4 years ago by ★ 8.7k
1
vote
2
replies
1.1k
views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID pathway-analysis
updated 2.4 years ago by 33k • written 2.4 years ago by ▴ 330
0
votes
0
replies
633
views
Pathway enrichment analysis bacterial genome
R kegg clusterprofiler david metacyc
updated 2.4 years ago by 20 • written 2.5 years ago by ▴ 210
0
votes
4
replies
661
views
Genbank GI accession format for DAVID input
DAVID Functional Analysis
updated 2.5 years ago by 89k • written 2.5 years ago by ▴ 40
0
votes
0
replies
669
views
Functional annotation chart from DAVID: Analogs or direct affiliations?
david annotation functional
2.5 years ago by LRStar ▴ 190
3
votes
8
replies
5.0k
views
DAVID Fisher Exact Test contingency table
pathway stats david
updated 3.2 years ago by ▴ 60 • written 4.2 years ago by 12k
2
votes
2
replies
844
views
Gene enrichment analysis
gene_enrichment david blast2go uniprot
updated 3.3 years ago by ★ 1.9k • written 3.3 years ago by ▴ 40
1
vote
9
replies
2.8k
views
NM_transcript ID gene identification
rna-seq gene ontology panther refseq DAVID
updated 3.4 years ago by 104k • written 3.4 years ago by ▴ 20
3
votes
13
replies
4.7k
views
DAVID functional Analysis and its visualization of GO terms using Bar plot
DAVID GO term visualization
updated 3.5 years ago by 76k • written 3.5 years ago by ▴ 60
2
votes
0
replies
1.0k
views
Meaning of UNIGENE_EST_QUARTILE terms in DAVID functional annotation
functional annotation DAVID UniGene expression EST
3.5 years ago by mikus_ja ▴ 20
2
votes
3
replies
8.5k
views
DAVID: p-value and Benjamini correction interpretation
DAVID Benjamini correction functional annotation
updated 3.5 years ago by ▴ 620 • written 3.5 years ago by • 0
2
votes
2
replies
2.3k
views
Display the results obtained from DAVID and g:profiler functional annotation tools
DAVID functional annotation g:profiler
3.6 years ago by The Last Word ▴ 220
2
votes
1
reply
850
views
Get gene ids from probe ids (my idea is right or wrong)
probe blast UNIPROT ENTREZ DAVID
3.6 years ago by The Last Word ▴ 220
1
vote
3
replies
2.0k
views
Gene set enrichment analysis vs functional enrichment analysis?
GSEA DAVID Functional enrichment analysis
updated 3.7 years ago by ★ 11k • written 3.7 years ago by ▴ 10
0
votes
2
replies
3.3k
views
The way to get the all p-value of functionally annotated categories from DAVID?
DAVID GO
updated 3.7 years ago by 20 • written 7.2 years ago by ▴ 70
1
vote
2
replies
1.9k
views
DAVID gene enrichment - multiple Entrez IDs per gene symbol, what to do?
DAVID GO Gene-enrichment
3.7 years ago by BioBing ▴ 130
9
votes
5
replies
10k
views
Questions about DAVID
DAVID
updated 3.8 years ago by ▴ 130 • written 5.6 years ago by ▴ 90
3
votes
6
replies
2.0k
views
DAVID not accepting locus_tag identifiers. Alternatives?
DAVID locus_tag
3.8 years ago by ThePresident ▴ 170
3
votes
5
replies
1.7k
views
How to perform functional gene clustering?
DAVID clustering
updated 3.8 years ago by 76k • written 3.8 years ago by ▴ 170
0
votes
1
reply
882
views
GI identifiers lost
identifier GI protein conversion DAVID
3.8 years ago by albert.rafels • 0
0
votes
1
reply
3.6k
views
What type of identifiers are GENE IDs of s. pombe to use in DAVID?
Gene ID GENE ID s. pombe DAVID
updated 4.1 years ago by • 0 • written 6.8 years ago by ★ 1.5k
2
votes
10
replies
1.6k
views
DAVID and Panther can't identify certain Uniprot Accessions
DAVID UniProt Panther Gene Annotation
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by • 0
3
votes
16
replies
2.5k
views
Transform from uniprot accesion to entrez gene id
R uniprot entrez biocluster david
4.3 years ago by felipebihaiek • 0
3
votes
5
replies
1.6k
views
List of GO terms that are overrepresented in a geneset
gene gene ontology GO DAVID
updated 4.4 years ago by 7.0k • written 4.4 years ago by • 0
7
votes
5
replies
3.7k
views
David Gene Id
David Gene_id Annotation
updated 4.5 years ago by 7.0k • written 5.4 years ago by ▴ 260
8
votes
3
replies
1.3k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
david go ontology pathway enrichment News
4.8 years ago by pld 4.9k
0
votes
4
replies
1.8k
views
Geneset enrichment in non-model organism with DAVID
DAVID geneset enrichment
updated 4.9 years ago by ★ 1.9k • written 4.9 years ago by ▴ 210
0
votes
0
replies
1.1k
views
DAVID Web Services, Perl Client troubleshooting
software error Perl DAVID SOAP
4.9 years ago by adam.faranda ▴ 90
6
votes
8
replies
3.2k
views
Inconsistent numbers when using Kegg pathway analysis via DAVID?
DAVID kegg
updated 5.0 years ago by 7.0k • written 6.2 years ago by ▴ 20
1
vote
3
replies
1.4k
views
DAVID inconsistent results
david
5.0 years ago by mozart.marins12 ▴ 10
50 results • Page 1 of 1
Recent Votes
Comment: FASTA of translated amino acid sequences in their six reading frames, which one
A: How To Convert List Of Entrez Ids Into Gene Name
Comment: Orthology, sequence similarity, and conservation of function
Comment: Orthology, sequence similarity, and conservation of function
Answer: Orthology, sequence similarity, and conservation of function
Answer: Orthology, sequence similarity, and conservation of function
Answer: Multiple BAM files (ccs) input with Lima (PacBio)
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Recent Replies
Comment: error related to vcfstats by Ram 34k
Does vcfstats have a github repo? You may want to browse through and if necessary, open an issue there.
Comment: error related to vcfstats by rheab1230 ▴ 10
I did the above. but I am still getting error. Traceback (most recent call last): File "/opt/ohpc/pub/libs/gnu8/numpy/1.15.3…
Comment: error related to vcfstats by Ram 34k
In my experience, mixing pip with conda hasn't always played out well. You may want to `conda install numpy` to make sure everyone knows wh…
Comment: Computational Biologist - Versiti Blood Research Institute by Ram 34k
Please edit your post and add the job location (City, Country) to the title. Right now, there is no way to know where the job is located wi…
Comment: convert detailed alignment format to fasta by Pierre Lindenbaum 137k
an example of output is needed.
Comment: Orthology, sequence similarity, and conservation of function by Dunois ★ 1.3k
Many thanks for the link to this book!! I am still reading, and I have a lot of information to digest. It also addresses some of the aspec…
Comment: VG Installation with Ubuntu by Pierre Lindenbaum 137k
are you compiling on Windows ?
Answer: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese by chrchang523 8.3k
The IIDs aren't identical between your two files.
Comment: individual-level allele frequencies by chrchang523 8.3k
Sorry to be the bearer of bad news, but if you're looking for "individual-level allele frequencies" on a genotype callset, you're almost ce…
Comment: Exception in thread "main" htsjdk.samtools.util.SequenceUtil$SequenceListsDiffer by Pierre Lindenbaum 137k
> Could you tell me what kind of files I should use as a reference? As I said, the reference file that was used to map the bam.
Comment: Exception in thread "main" htsjdk.samtools.util.SequenceUtil$SequenceListsDiffer by bill • 0
Thank you for the answer The script provided in the article suggests that I add my own reference genome > # PICARD - v2.1.1 # user needs…
Comment: Mapping taxonomy ID to virus host by Jagoda • 0
I have names for my species, just trying to get hosts as well.
Comment: I am converting the fq.gz. files (which are the results of the mgi study) to bam by GenoMax 104k
Please use `ADD REPLY/ADD COMMENT` when replying to existing posts. Do not use `SUBMIT ANSWER` unless you are posting a new answer for orig…
Comment: I am converting the fq.gz. files (which are the results of the mgi study) to bam by canavar • 0
to index the file: samtools index 111414_L01_41_1.sorted.bam and after that there comes `rm` and `cp` phases
Comment: Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering by zorbax ▴ 250
you can filter a correlation matrix as this answer mention it: https://stackoverflow.com/questions/44889508/if-correlation-is-greater-than-…
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