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Filtering for tag:
extraction
•
reset
1
vote
9
replies
1.3k
views
In R: Print column names if value is greater than a value in a different column.
R
data
extraction
updated 11 months ago by
Asaf
8.6k • written 11 months ago by
rjobmc
• 0
2
votes
6
replies
645
views
Failure in extracting reads from bam file due to unknown reference
alignment
bam
extraction
reference
17 months ago by
marongiu.luigi
▴ 540
2
votes
3
replies
571
views
How can I Extract PMID only for a query in a text file while searching it on NCBI pubmed?
sequence
literature
extraction
alignment
next-gen
updated 18 months ago by
mrpfd3v
• 0 • written 2.1 years ago by
genious.kalia.141198
• 0
4
votes
7
replies
784
views
Extracting contaminated reads from the sequenced data
genome
sequencing
extraction
illumina
updated 2.3 years ago by
GenoMax
99k • written 2.3 years ago by
manjumoorthy95
▴ 50
4
votes
11
replies
1.5k
views
grep/awk issue: can't extract sequences from a fasta file
fasta
sequence
extraction
grep
shell
updated 2.4 years ago by
Biostar
20 • written 2.8 years ago by
benoit.kunath
▴ 10
0
votes
1
reply
447
views
Features extraction from protein 3D structures
proteins
features
extraction
3D strcuture
2.5 years ago by
biotechuos4
• 0
4
votes
8
replies
4.1k
views
Extract Only Paired-End Reads That Map A Specific Interval
bedtools
extraction
updated 2.5 years ago by
pnatsidis
• 0 • written 8.6 years ago by
Nicolas Rosewick
9.3k
0
votes
3
replies
565
views
Extract sequences which do not have blast hits
RNA-Seq
sequence
blast
extraction
2.6 years ago by
karthic
▴ 100
5
votes
11
replies
2.2k
views
subgraph extraction based on the edges weights and graph connectivity
R
graph
subgraph
extraction
weight
updated 2.8 years ago by
ejm32
▴ 440 • written 2.8 years ago by
arronar
▴ 240
0
votes
0
replies
995
views
Extraction of 16S hypervariable regions
16S hypervariable regions
software
extraction
3.4 years ago by
jerald
• 0
2
votes
3
replies
1.5k
views
Extracting Protein Sequences
protein
sequence
extraction
updated 3.6 years ago by
Biostar
20 • written 9.6 years ago by
Hari
▴ 280
12
votes
10
replies
4.6k
views
How to extract contigs from FASTA file which contains specific sequence
fasta
contig
extraction
find
updated 3.7 years ago by
Brian Bushnell
17k • written 6.3 years ago by
Paul
★ 1.4k
3
votes
12
replies
1.7k
views
how to extract a random set of SNP from a SNP table
SNP
random sample
extraction
updated 3.9 years ago by
Alex Reynolds
32k • written 3.9 years ago by
Ana
▴ 180
0
votes
0
replies
2.3k
views
SNPSift Genotype Extraction
snpsift
genotype
extraction
updated 5.9 years ago by
Biostar
20 • written 5.9 years ago by
anon123
▴ 10
6
votes
13
replies
3.3k
views
6 follow
Partial Cds Extraction From Incomplete Transcripts
cds
extraction
rna
updated 6.6 years ago by
Biostar
20 • written 9.3 years ago by
Raghul
▴ 200
1
vote
8
replies
3.7k
views
Get All Alleles Of 1 Column In Bam File
bam
position
extraction
read
updated 7.1 years ago by
guns.guru
▴ 60 • written 9.4 years ago by
Manon Delahaye
▴ 10
0
votes
2
replies
5.1k
views
Motif Extraction Using R Package?
bioinformatics
motif
extraction
r
updated 7.4 years ago by
Ashwin
▴ 70 • written 7.4 years ago by
p2011001
• 0
3
votes
6
replies
3.9k
views
Extracting The Features From Genbank File
genbank
feature
extraction
updated 7.6 years ago by
Biostar
20 • written 7.7 years ago by
ancient_learner
▴ 630
2
votes
6
replies
3.2k
views
How To Extract Only Geneid From Fasta Header?
sequence
extraction
fasta
perl
updated 7.7 years ago by
Kenosis
★ 1.2k • written 7.7 years ago by
Abdul Rawoof
▴ 60
8
votes
3
replies
5.4k
views
A Way To Get Dna Sequence From Specific Coordinates Using An Online Service
sequence
extraction
updated 7.9 years ago by
Pierre Lindenbaum
135k • written 7.9 years ago by
KCC
★ 4.0k
22
votes
20
replies
4.1k
views
How To Join Text Files By A Certain Column (Accession Id)
extraction
updated 8.2 years ago by
Sebastian Kurscheid
▴ 300 • written 8.2 years ago by
2011101101
▴ 100
8
votes
6
replies
5.4k
views
Sra Toolkit For Pacbio
sra
extraction
updated 8.4 years ago by
osullivanchristopher
▴ 210 • written 8.4 years ago by
Lee Katz
★ 3.1k
9
votes
6
replies
1.5k
views
Matching The Entries And Printing Data
sequence
extraction
id
script
updated 8.5 years ago by
a.zielezinski
9.7k • written 8.5 years ago by
Nandini
▴ 900
11
votes
16
replies
7.3k
views
6 follow
Help Me Finish This Perl Code To Extract A Column In A Table
perl
data
extraction
updated 8.5 years ago by
Irsan
★ 7.3k • written 8.5 years ago by
shane.neeley
▴ 50
1
vote
2
replies
2.3k
views
Contig Extraction From .Ace File
assembly
extraction
metagenomics
updated 8.6 years ago by
Ketil
4.0k • written 8.6 years ago by
zimmlerten
• 0
1
vote
3
replies
4.2k
views
[Help]: Extracting Sequence From Fasta Using Blast Informations?
python
biopython
fasta
blast
extraction
8.7 years ago by
francois.maginiot
▴ 10
24
votes
7
replies
25k
views
How To Extract Set Of Reads From Fastq (Or Eventually Fasta And Qual) Based On List Of Ids?
extraction
read
454
fastq
fasta
updated 8.9 years ago by
Martin A Hansen
3.0k • written 8.9 years ago by
Biomonika (Noolean)
3.1k
6
votes
4
replies
1.3k
views
Experiment Data
data
extraction
updated 8.9 years ago by
seidel
7.6k • written 8.9 years ago by
Plasmid
▴ 160
27
votes
6
replies
24k
views
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools
bed
extraction
promoter
fasta
updated 9.2 years ago by
Aaronquinlan
11k • written 9.2 years ago by
Anima Mundi
★ 2.8k
13
votes
11
replies
9.0k
views
How To Extract Random Snps From Whole Genome Data?
snp
extraction
updated 9.3 years ago by
Caddymob
▴ 980 • written 9.3 years ago by
User 1793
▴ 40
1
vote
3
replies
2.2k
views
Extract A Subrange Of Sequences From A Genbank File
extraction
genbank
updated 9.3 years ago by
Pierre Lindenbaum
135k • written 9.3 years ago by
Iván
▴ 20
2
votes
3
replies
1.8k
views
Extraction Of Part Of Different Grp Of Nucleotide Sequence In 10000 Of Sequences.
extraction
sequence
updated 9.4 years ago by
Ido Tamir
5.2k • written 9.6 years ago by
Pawan Jayaswal
• 0
22
votes
11
replies
11k
views
9 follow
Bam : Extract Only Alignment With A Specific Length
bam
rna
alignment
extraction
length
updated 9.6 years ago by
Marvin
▴ 850 • written 9.6 years ago by
Nicolas Rosewick
9.3k
6
votes
6
replies
1.8k
views
Text Mining: Extracting Some Genes And Some Variations From An Article.
text
identifiers
extraction
variant
updated 9.7 years ago by
Fred Fleche
4.3k • written 9.7 years ago by
Pierre Lindenbaum
135k
22
votes
5
replies
3.8k
views
Is There Any Tool To Extract Demanded Information From An Asn/Xml File?
xml
human
gene
extraction
updated 10.1 years ago by
Andra Waagmeester
3.2k • written 10.6 years ago by
Jdk
▴ 20
24
votes
11
replies
8.7k
views
7 follow
How To Extract Specific Coordinates From Multifasta File
extraction
fasta
coordinates
updated 10.1 years ago by
Florianino
▴ 30 • written 10.1 years ago by
Florianino
▴ 70
36 results • Page
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Comment: Trimmomatic-0.36 not finding adapter directory
by
GenoMax
99k
Order of `fastq` file names is important for `trimmomatic`. Make sure that is correct.<br> Does `ls -lh /usr/local/bin/Trimmomatic-0.36/` …
Answer: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
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No love for [Tablet][1]? I'm quite surprised to not see it mentioned here. Of course, IGV is the classic, and Tablet is a bit simpler than …
Comment: How to download raw sequence data from GEO/SRA
by
cicindel
▴ 70
I tried to use the SRA toolkit a few months ago, I succesfully installed it and used `prefetch` to get the data, as per their tutorial, but…
Comment: Concatenating fasta files based on prefix ?
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If each group has `._1_1.txt.fa` and the pattern is exactly same as in OP, try this: ls *1_1.txt.fa | while read line; do echo ${line%…
Comment: Bioinformatics startup market analysis
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good luck!
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Dear @juanjo75es, thank you for your input. We do agree that NGS data/metadata should be more accessible to public, in part also due to ini…
Comment: Bioinformatics startup market analysis
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gtechbio
▴ 30
Dear @grant.hovhannisyan, thank you for the advice. In fact we are already in touch with two local genomics facilities, though as you have …
Answer: No annotation peaks when running homer
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geneticatt
▴ 120
Try raising your p-value to make sure that they aren't all just being filtered out by that threshold (which seems pretty low). Edit: I may…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
It looks like the following: system(paste0("mafft --anysymbol --maxiterate 1000 Alignment_output/",GENE,".fa > ",GENE,".mafft.fa")) GE…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
Yes, I am using the following loop first in R to process all the files. This is the code that I am running first: blastn.filelist <- s…
Comment: Bioinformatics startup market analysis
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grant.hovhannisyan
★ 2.1k
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Comment: question when using topgo
by
Kevin Blighe
72k
^^ this
Answer: question when using topgo
by
seidel
7.6k
The GenTable() function has a parameter called *numChar* that controls this: "the GO term definition will be truncated such that only the f…
Comment: why my volcano plot looks strange?
by
cpad0112
15k
is it `log10p` or `-log10p` on y-axis?
Answer: How to get GO terms to specific to perticular biological process
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geneticatt
▴ 120
See the 'is_a' field in the go.obo file. If you're looking for all subcategories of GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl…
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