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Showing top results for tag: gtex • reset
0
votes
1
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90
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How to download GTEx figure from USCS genome browser
UCSC GTEx
updated 7 days ago by ▴ 950 • written 7 days ago by ★ 8.7k
0
votes
0
replies
48
views
lncrna positive control gtex
gtex lncrna
updated 11 days ago by 52k • written 11 days ago by • 0
2
votes
2
replies
217
views
WGCNA - GTEx RNASeq - Help choosing a soft power
WGCNA RNA-Seq GTEx
28 days ago by Branden • 0
0
votes
1
reply
143
views
Mendelian Randomisation with GTEx data
Expression GTEX Randomisation MR
updated 4 weeks ago by • 0 • written 9 weeks ago by • 0
0
votes
0
replies
103
views
GTEx controlled data download
data FASTQ BAM controlled GTEX
4 weeks ago by Taktak31 • 0
0
votes
0
replies
97
views
SNP tissue expression
R GTEx
updated 6 weeks ago by 104k • written 6 weeks ago by • 0
1
vote
4
replies
1.0k
views
GTEx eQTL data
eQTL GTEx gene
updated 9 weeks ago by ★ 8.7k • written 16 months ago by ▴ 10
1
vote
2
replies
144
views
Strand for GTEx WGS data?
GTEx WGS strand
12 weeks ago by spitzer • 0
0
votes
1
reply
228
views
Normalization - Tissue specificity analysis
gtex
updated 3 months ago by 89k • written 3 months ago by ▴ 40
0
votes
0
replies
135
views
GTEX Gene Selection
GTex
5 months ago by Bine ▴ 20
2
votes
2
replies
200
views
where can I find a table with the coordinates of all the exons in a specific transscript in the GTEX?
GTEX
updated 6 months ago by 22k • written 6 months ago by • 0
0
votes
0
replies
316
views
could I conduct colocalization analysis based on the GWAS results from Asia and eQTL from GTEx
GTEx colocalization analysis eQTL
7 months ago by 961998723 • 0
1
vote
2
replies
832
views
Is there a single cell RNAseq equivalent of GTEx or TCGA?
RNA-Seq GTEx
updated 7 months ago by 20 • written 15 months ago by ▴ 30
0
votes
5
replies
1.1k
views
GTEX - how to upload more than one rsIDs to get gene expression or eQTL information
GTEx snps rsids
updated 10 months ago by ▴ 10 • written 2.8 years ago by ▴ 70
0
votes
3
replies
497
views
Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
10 months ago by rodd ▴ 140
0
votes
0
replies
307
views
Unable to convert GTEx v8 ensemble gene id+version to gene names using biomart
biomart ensembl gtex
updated 12 months ago by 11k • written 12 months ago by ▴ 20
0
votes
0
replies
391
views
GTEX RNA Seq. Pipeline
RNA-Seq Raw_data GTex
13 months ago by Bine ▴ 20
2
votes
3
replies
341
views
Possible approach to select normal tissue samples for cancer RNA-Seq data without reference data for downstream analyses
RNA-Seq R batch effect GTEx DE
16 months ago by svlachavas ▴ 740
1
vote
1
reply
1.3k
views
How extract gene TPM from GTEx?
GTEx Gene_expression RNA-seq
updated 18 months ago by ▴ 980 • written 18 months ago by ▴ 270
0
votes
0
replies
413
views
Questions of rs17632542 in cis-eQTL-GTEx-V8
eQTL GTEx V8 rs17632542
updated 18 months ago by 20 • written 20 months ago by ★ 8.7k
1
vote
2
replies
300
views
How to check the distribution of gene expression across the genome?
genome GTEx gene
updated 19 months ago by ▴ 100 • written 19 months ago by • 0
3
votes
2
replies
399
views
miR155HG is significantly up-regulated in EBV-transformed lymphocytes
mir155HG GTEx
19 months ago by Shicheng Guo ★ 8.7k
1
vote
5
replies
866
views
db-GaP / GTEx analysis on the cloud. Easiest way?
db-gap GTEx cloud amazon google
updated 20 months ago by 12k • written 20 months ago by ▴ 20
1
vote
2
replies
799
views
Filtering out by gene and samples from VCF files
vcf SNP vcftools gtex gene
updated 21 months ago by 137k • written 21 months ago by ▴ 70
9
votes
7
replies
1.8k
views
Transcript vs. Gene TPM counts?
RNA-Seq GTEx GTEX
updated 22 months ago by ★ 3.6k • written 22 months ago by ▴ 300
2
votes
3
replies
502
views
Differential expression analysis in different groups of individual (GTEx)
RNA-Seq GTEx DESeq2
23 months ago by Boboboe ▴ 40
2
votes
4
replies
439
views
How to define psychiatric disorder patients from GTEx?
database GTEx psychiatric disorder
23 months ago by thejustpark ▴ 80
5
votes
5
replies
1.3k
views
get GTEx mean expression by tissue
GTEx RNAseq RNA-Seq GTEx RNAseq
updated 2.1 years ago by ▴ 60 • written 2.2 years ago by ▴ 10
3
votes
9
replies
2.7k
views
How to download GTEx V7 raw RNA-seq data which is possibly deposited in gs.US s3.us-east-1 instead of sra?
RNA-Seq GTEx
updated 2.2 years ago by ▴ 40 • written 2.4 years ago by ▴ 10
0
votes
0
replies
540
views
Where to get population diversity information of GTEx database?
GTEx pca rna-seq
2.3 years ago by r.tor ▴ 50
0
votes
1
reply
624
views
How does RNA relative abundance relate to SNPs and eQTLs?
snp eQTL abundance RNA GTex
updated 2.4 years ago by 11k • written 2.4 years ago by ▴ 40
3
votes
1
reply
2.2k
views
GTEx files, single tissue cis-eQTLs
eQTL GTEx
updated 2.5 years ago by ★ 8.7k • written 4.1 years ago by ▴ 30
0
votes
0
replies
1.5k
views
GTEX effect sizes and violin plots
gtex expression eqtl
2.5 years ago by ognjen011 ▴ 200
1
vote
5
replies
1.3k
views
issues with GTEx data annotation files
GTEx excel
2.6 years ago by david.peeney ▴ 30
9
votes
11
replies
1.3k
views
How to deal with large inter-sample variation when using GTEx RNA-seq data?
RNA-Seq GTEx variation deseq2 limma
2.6 years ago by Akos ▴ 20
11
votes
7
replies
7.5k
views
Working with GTEX dataset
RNA-Seq GTEX
updated 2.7 years ago by • 0 • written 6.1 years ago by ▴ 150
0
votes
0
replies
794
views
Comparing Human and Mouse expression data
rna-seq GteX
2.8 years ago by Sumit Paliwal ▴ 30
0
votes
0
replies
542
views
Prioritize SNPs based on gene expression in multiple tissues
gtex gene expression SNP
3.1 years ago by kakukeshi ▴ 80
1
vote
0
replies
2.4k
views
GTEx bam/vcf files download
GTEx bam vcf
3.2 years ago by filippo.martignano ▴ 20
3
votes
5
replies
1.4k
views
Convert list of rs IDs from one format to another
SNP identifiers eQTL GTEx
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 110
3
votes
1
reply
3.7k
views
GTEx Analysis V7 RNA-seq dataset download
GTEX RNAseq
updated 3.5 years ago by 27k • written 3.5 years ago by ★ 8.7k
1
vote
1
reply
873
views
missing a sample and individual attributes in GTEX Adipose- Subcutaneous(v7)
RNA-Seq GTEx Adipose
3.5 years ago by ATCG ▴ 320
0
votes
0
replies
790
views
Data set with both genetic variants and gene expressions
gene expression variants causal relationship GTEx
updated 3.5 years ago by 20 • written 3.7 years ago by ▴ 100
0
votes
4
replies
1.4k
views
gTEX normalize counts by genotype
gTEX genotype eQTL
3.7 years ago by Bioninbo • 0
4
votes
7
replies
1.8k
views
DESeq2 for differential gene expression on GTEx dataset
differential gene expression DESeq2 GTex RNA-Seq
3.7 years ago by vikram • 0
1
vote
2
replies
1.1k
views
RPKM documentation is needed!
rpkm gtex RNA-Seq
3.8 years ago by sima_r1391 ▴ 10
3
votes
0
replies
1.4k
views
Combined VCF file for all GTEx genotype calls?
GTEx Genotype VCF files dbGap GTEx v7
3.8 years ago by django.waddle ▴ 60
1
vote
0
replies
1.2k
views
How to access up-to-date exon data from GTEx project
gtex isoform exon RNAseq tissue-specific
4.0 years ago by vlrieg ▴ 20
3
votes
4
replies
2.4k
views
Annotation of GWAS results with GTEx
SNP gwas eqtl gtex
updated 4.0 years ago by • 0 • written 4.1 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Gene expression sperm database
GTEx RNA-Seq
4.1 years ago by IP ▴ 720
50 results • Page 1 of 1
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Answer: Python modules/code to generate triangulations of Solvent Excluded Surfaces
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Make yourselves a website? Nothing flashy; the simpler the better. Do some pro bono work to build up a portfolio + earn some goodwill and n…
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Thank you for this tutorial! It helps immensely in my work. May I ask what is imputation? My beginner understanding is that we use referen…
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Thank you so much for your insights! I have a clearer picture of what is to be done now. I had read the part 3 of your tutorial earlier but…
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I found a [forum](https://stats.stackexchange.com/questions/5750/look-and-you-shall-find-a-correlation/5754#5754) from stack exchange that …
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How will you store the duplicates?
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That was very well simplified! Thanks!
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