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Recent Replies
Comment: Problem loading my multifasta
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GenoMax
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> Invalid msa or the file does not exist!
Looks like the program needs a multiple sequence alignment (MSA) file NOT a simple multi-fasta f…
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There is another subtlety here to do with correction for gene length in the RPKM and TPM measures. Log-counts-per-million performs quite re…
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You could use [BEDOPS][1] `bedops --partition` to easily [calculate disjoint elements from a set of overlapping elements][2].
Then you co…
Answer: What is the Sleuth intercept and how can Sleuth be used when you have >2 treatme
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https://github.com/pachterlab/sleuth/issues/156
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If the string before the "." is always the same, you can do `substr(dataframe$gene_name,5,999)`, or `gsub("AMP.","",dataframe$gene_name)`.
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I highly recommend http://popgen.dk/popgen21/ They provide an annual summer course so keep an eye out for 2022.
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He says
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i was skeptical of this but here is lh3 saying so also https://www.biostars.org/p/3232/#3235 :)
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There may be one in 2022. They seem to hold them every other year. This link is the for the last one: https://evomics.org/2020-workshop-on-…
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those tools definitely work in a breadth-first manner as you wanted
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If there are no warnings or errors, and the program indicates that the command was successful, then there should be output files with prefi…
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HI, if the copy number from GTC is 1, this equates to a log2 ratio of -1. Please see:
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It is true. Thanks a lot, Mensur. Now it is working well
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Comment: IMPUTE2 -merge_ref_panels
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there is no error or warning, but in the summary file the last entry is as follows:
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Run log
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RESETTING PARAMETERS FO…
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