580
votes
155
replies
64k
views
89 follow
4
votes
6
replies
296
views
1
vote
1
reply
595
views
18 months ago by
Parham
★
1.5k
1
vote
10
replies
891
views
23 months ago by
domenico.somma
▴
20
2
votes
2
replies
2.5k
views
updated 3.8 years ago by
GenoMax
99k
•
written 3.8 years ago by
nusrat.bot
•
0
14
votes
1
reply
1.6k
views
Recent Votes
Recent Locations •
All
Qatar, 1 minute ago
Seville, ES, 2 minutes ago
Germany, 2 minutes ago
Cambridge, UK, 3 minutes ago
India, 3 minutes ago
Tübingen, 4 minutes ago
France/Toulouse/CRCT-Oncopole, 4 minutes ago
Recent Awards •
All
Popular Question to
Thomas
▴
100
Popular Question to
rekren
▴
30
Teacher to
Michael Dondrup
48k
Popular Question to
Sej Modha
4.8k
Teacher to
michael.ante
★
3.6k
Scholar to
Pierre Lindenbaum
135k
Scholar to
Bastien Hervé
4.9k
Recent Replies
Comment: Why GC content is important on NIPT results?
by
German.M.Demidov
★
2.0k
NIIPT can be performed in various variations and for different purposes. Is it chromosome abnormalities test in your case? If so, extreme G…
Comment: bedops wig2bed 'Row begins with a tab or space' error
by
a_bis
•
0
The output looks as follows:
1^I0^I3000060^I0.000000$
1^I3000060^I3000090^I0.224911$
1^I3000090^I3000120^I0.449820$
1^I30…
Comment: Samtools view filter by reference sequence
by
maxrwjones898
•
0
Thanks for your answer, I will give this a go!
Answer: Variant calling from comparison of assembled genomes where there is only one r
by
Hans
▴
120
It appears that bcftools takes into consideration the alignments of all genotypes when it calls variants. When I call the variants separat…
Comment: What Coverage allele-fraction threshold to use?
by
German.M.Demidov
★
2.0k
At each genomic position you have a specific coverage, say X. Y out of X reads may support an alternative variant, X - Y - reference. You n…
Answer: Finding all instances of a recurring motif in a repeat protein
by
Mensur Dlakic
★
10k
Some papers to consider:
- https://academic.oup.com/bioinformatics/article/24/6/807/194276
- https://academic.oup.com/bib/article/15/…
Comment: why my volcano plot looks strange?
by
ATpoint
47k
First thing to do would be to not use custom statistics but a proper framework such as limma. There are quite some peptides (or whatever yo…
Answer: Help with CNV calling using ExomeDepth
by
Joakim
▴
10
Instead of using bedframes from data(genes.hg19) and data(exons.hg19) in ExomeDepth, I got them from the UCSC Table Browser for hg38 (http:…
Answer: How to grep scaffold from the vcf file
by
Pierre Lindenbaum
135k
bcftools view --regions-file file1.txt input.vcf
Comment: How Can I Merge A Large Amount Of Vcf Files?
by
Thind amarinder
▴
130
how to add, one more column with for sample names (e.g base name of the file)
Tried the following it worked sed 's/$/\t'"$input"'/' $inp…
Comment: vcftools intersect vs bedtools intersect
by
Alex Reynolds
32k
`--intersect` means something different in `bedops` than it does in other tools. With `--element-of`, this is a set membership test: does t…
Answer: For loop - mkdir and command
by
5heikki
9.6k
Perhaps:
for F in *.fasta; do
mkdir /Users/laura/bio/insilicoseq/$(basename "$F" .fasta)
iss generate \
-…
Comment: why my volcano plot looks strange?
by
hellocita
▴
30
Thanks for your help! Now it looks better, and there are still many dots near the middle line, was this acceptable?
Comment: LTR insertion time
by
stevejonn
•
0
The first thing you should understand is that SettingWithCopyWarning is a warning, and not an error. The real problem behind the warning is…
Answer: why my volcano plot looks strange?
by
swbarnes2
9.7k
Reverse and log scale the y axis for starters.
Traffic: 2707 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6