Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
6 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
Filtering for tag:
handbook
•
reset
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 3 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
4
votes
6
replies
296
views
Error in example RNA-Seq Example
RNA-Seq
R
Deseq
Handbook
rna-seq
9 months ago by
lextallan
▴ 10
1
vote
1
reply
595
views
Biostar Handbook, student or professional?
handbook
student
professional
18 months ago by
Parham
★ 1.5k
1
vote
10
replies
891
views
Make sense filter annotation?
RNA-Seq
annotation
ensembl
handbook
23 months ago by
domenico.somma
▴ 20
2
votes
2
replies
2.5k
views
The Biostar Handbook: A Beginner's Guide to Bioinformatics
handbook
updated 3.8 years ago by
GenoMax
99k • written 3.8 years ago by
nusrat.bot
• 0
14
votes
1
reply
1.6k
views
News:
The Gene Ontology Handbook (open access)
handbook
training
news
tutorial
GO
News
4.3 years ago by
Christophe Dessimoz
▴ 700
6 results • Page
1 of 1
Recent Votes
Answer: Samtools sort: too many open files error
Is it bad practice to change threshold for interaction probability?
Answer: Is it bad practice to change threshold for interaction probability?
What to put in my Github
Comment: What to put in my Github
Answer: Samtools view filter by reference sequence
Answer: Samtools view filter by reference sequence
Recent Locations •
All
Qatar,
1 minute ago
Seville, ES,
2 minutes ago
Germany,
2 minutes ago
Cambridge, UK,
3 minutes ago
India,
3 minutes ago
Tübingen,
4 minutes ago
France/Toulouse/CRCT-Oncopole,
4 minutes ago
Recent Awards •
All
Popular Question
to
Thomas
▴ 100
Popular Question
to
rekren
▴ 30
Teacher
to
Michael Dondrup
48k
Popular Question
to
Sej Modha
4.8k
Teacher
to
michael.ante
★ 3.6k
Scholar
to
Pierre Lindenbaum
135k
Scholar
to
Bastien Hervé
4.9k
Recent Replies
Comment: Why GC content is important on NIPT results?
by
German.M.Demidov
★ 2.0k
NIIPT can be performed in various variations and for different purposes. Is it chromosome abnormalities test in your case? If so, extreme G…
Comment: bedops wig2bed 'Row begins with a tab or space' error
by
a_bis
• 0
The output looks as follows: 1^I0^I3000060^I0.000000$ 1^I3000060^I3000090^I0.224911$ 1^I3000090^I3000120^I0.449820$ 1^I30…
Comment: Samtools view filter by reference sequence
by
maxrwjones898
• 0
Thanks for your answer, I will give this a go!
Answer: Variant calling from comparison of assembled genomes where there is only one r
by
Hans
▴ 120
It appears that bcftools takes into consideration the alignments of all genotypes when it calls variants. When I call the variants separat…
Comment: What Coverage allele-fraction threshold to use?
by
German.M.Demidov
★ 2.0k
At each genomic position you have a specific coverage, say X. Y out of X reads may support an alternative variant, X - Y - reference. You n…
Answer: Finding all instances of a recurring motif in a repeat protein
by
Mensur Dlakic
★ 10k
Some papers to consider: - https://academic.oup.com/bioinformatics/article/24/6/807/194276 - https://academic.oup.com/bib/article/15/…
Comment: why my volcano plot looks strange?
by
ATpoint
47k
First thing to do would be to not use custom statistics but a proper framework such as limma. There are quite some peptides (or whatever yo…
Answer: Help with CNV calling using ExomeDepth
by
Joakim
▴ 10
Instead of using bedframes from data(genes.hg19) and data(exons.hg19) in ExomeDepth, I got them from the UCSC Table Browser for hg38 (http:…
Answer: How to grep scaffold from the vcf file
by
Pierre Lindenbaum
135k
bcftools view --regions-file file1.txt input.vcf
Comment: How Can I Merge A Large Amount Of Vcf Files?
by
Thind amarinder
▴ 130
how to add, one more column with for sample names (e.g base name of the file) Tried the following it worked sed 's/$/\t'"$input"'/' $inp…
Comment: vcftools intersect vs bedtools intersect
by
Alex Reynolds
32k
`--intersect` means something different in `bedops` than it does in other tools. With `--element-of`, this is a set membership test: does t…
Answer: For loop - mkdir and command
by
5heikki
9.6k
Perhaps: for F in *.fasta; do mkdir /Users/laura/bio/insilicoseq/$(basename "$F" .fasta) iss generate \ -…
Comment: why my volcano plot looks strange?
by
hellocita
▴ 30
Thanks for your help! Now it looks better, and there are still many dots near the middle line, was this acceptable?
Comment: LTR insertion time
by
stevejonn
• 0
The first thing you should understand is that SettingWithCopyWarning is a warning, and not an error. The real problem behind the warning is…
Answer: why my volcano plot looks strange?
by
swbarnes2
9.7k
Reverse and log scale the y axis for starters.
Traffic: 2707 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6