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Recent Replies
Comment: Displaying points which fall outside of the plot window in EnhancedVolcano
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Hi there, just to follow up on this, I used your package to generate my volcano plots and got exactly what I was looking for. I now wish to…
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Hi, please show:
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fionajcunningham
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thanks GenoMax I will try this sorry for delay in reply!!
Fiona
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The alternative, constant off-by-one errors, aren't my idea of fun either :-)
Comment: Removing genes of Seurat object during integration pipeline
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Stevens
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Yeah, you can filter min_cells in Seurat with SCtransform. That would probably change the gene numbers in the SCT assay of the object. I u…
Comment: Removing genes of Seurat object during integration pipeline
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Doesn't sctransform has a `min_cells` parameter that you could use here? It will only consider genes detected in at least `min_cells` cells…
Comment: Removing genes of Seurat object during integration pipeline
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I was thinking of making it an arbitrary cut off of 10 cells, Seurat's documentation uses 3 for reading in a single sample. I believe that …
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With samtools v1.11, ```samtools view -b in.bam chr1 > out.bam``` did not work for me.
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Comment: Removing genes of Seurat object during integration pipeline
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What is a "few" cells? So how many? You would need to manually calculate the fraction of cells expressing a certain gene. Not sure in which…
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Thanks so much, it is a great suggestion. may I ask you if you know a way to visualize the results of these data in my report? as we are wo…
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I understand that you have whole blood samples and that's why you expect them to have more granulocytes? You could also try the [ENmix][1] …
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I am able to do this. I downloaded the .tar file instead of using conda
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I'll join you. I am not a fan of python either.
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Please pay close attention to [the command I wrote initially][1]. The correct command is `tabix -p vcf GEUVADIS.chr1.genotype.vcf.gz` The `…
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The valuable courses which are badly in need but expensive.
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