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18 results • Page
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Filtering for tag:
interpretation
•
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24
votes
0
replies
1.4k
views
Tutorial:
Resources / databases for clinical interpretation of cancer variants
variant
interpretation
annotation
clinical
cancer
Tutorial
6 months ago by
Malachi Griffith
18k
2
votes
2
replies
207
views
Interpretation of sparse reads
assembly
next-gen
interpretation
alignment
updated 12 months ago by
colindaven
★ 2.7k • written 12 months ago by
marongiu.luigi
▴ 540
0
votes
0
replies
201
views
Computational pipeline to interpret genetic variation from protein structure data
3D structure
genetic variation
interpretation
14 months ago by
Shicheng Guo
★ 8.6k
3
votes
1
reply
2.6k
views
DESeq2 results interpretation
deseq2
results
interpretation
20 months ago by
anna
▴ 10
1
vote
0
replies
993
views
MaxEntScan scores: How interpret them?
ngs
maxentscan
interpretation
splicing
variants
22 months ago by
Adrian
▴ 10
0
votes
4
replies
1.3k
views
How to interpret a read hit with IGV?
alignment
IGV
mapping
interpretation
updated 2.4 years ago by
Biostar
20 • written 2.4 years ago by
marongiu.luigi
▴ 540
3
votes
5
replies
3.7k
views
Tool:
Phevor: Phenotype Driven Variant Ontological Re-Ranking Tool
interpretation
prioritization
vaast
phevor
Tool
updated 3.2 years ago by
trustedagent1
• 0 • written 6.8 years ago by
Moses M. Feaster
▴ 30
2
votes
3
replies
941
views
Meaning of 'tag' in the context of variants
interpretation
variant
updated 3.6 years ago by
DG
7.2k • written 3.7 years ago by
andrewl
▴ 10
0
votes
2
replies
2.8k
views
MA plot interpretation before and after normalization
RNA-Seq
MA-plot
interpretation
explanation
updated 3.9 years ago by
YaGalbi
★ 1.5k • written 3.9 years ago by
Expe
▴ 10
2
votes
2
replies
2.0k
views
Job:
Senior Variant Analyst / Molecular Biologist, PierianDx, Pune, India
next-gen
curation
interpretation
Job
4.2 years ago by
aphatak
▴ 40
2
votes
2
replies
2.1k
views
cuffdiff splicing.diff 'notest' - interpretation?
cuffdiff
cufflinks
splicing
interpretation
5.5 years ago by
fing
• 0
1
vote
1
reply
2.1k
views
What is the interpretation of the obtained p-value here?
p-value
interpretation
pathway analysis
5.8 years ago by
Na Sed
▴ 310
0
votes
0
replies
1.5k
views
RSAT: matrix scan result interpretation
RSAT
interpretation
results
5.9 years ago by
dinesh
▴ 50
0
votes
0
replies
1.9k
views
GEM mappability > wig/bedgraph : how to interprete
gem
wiggle
bedgraph
mappbility
interpretation
updated 19 days ago by
Ram
32k • written 6.0 years ago by
mehran.karimzade
▴ 180
18
votes
5
replies
17k
views
question about GSEA
GSEA
interpretation
updated 6.1 years ago by
TriS
★ 4.3k • written 6.1 years ago by
kanwarjag
★ 1.1k
1
vote
7
replies
2.1k
views
Do I have to take strand information when creating a PWM?
PWM
interpretation
updated 6.2 years ago by
Istvan Albert
87k • written 6.2 years ago by
Affan
▴ 290
2
votes
1
reply
2.4k
views
Problem with FPKM values
FPKM
interpretaion
fpkm
interpretation
updated 6.7 years ago by
swbarnes2
9.7k • written 6.7 years ago by
msameet
▴ 40
3
votes
5
replies
3.8k
views
Tool:
Omicia Opal™ Research - Variant Annotation and Disease-Gene Prioritization
vaast
interpretation
annotation
Tool
6.8 years ago by
Moses M. Feaster
▴ 30
18 results • Page
1 of 1
Recent Votes
Comment: Keep values from VCF file into Ensembl VEP annotation
Answer: Creating reference genome for mapping and then selecting
Comment: Creating reference genome for mapping and then selecting
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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Comment: Keep values from VCF file into Ensembl VEP annotation
by
dare_devil
★ 1.4k
it would be great and helpful to others if you share your answer here.
Answer: Expression of gene of interest across conditions in single-cell data
by
jared.andrews07
9.1k
Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
Comment: Extracting only tumor samples from Single cell RNASeq
by
jared.andrews07
9.1k
You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
Comment: Cell composition in each condition of single cell data
by
paria.alipour
▴ 20
Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
Answer: bbmap, mapq and uniquelly mapped reads filtering
by
GenoMax
99k
Many threads exist that show how to extract uniquely mapped reads. Here are a couple of examples:<br> https://www.biostars.org/p/276216/#27…
Comment: Cell composition in each condition of single cell data
by
rpolicastro
5.1k
The images seem to be missing from your post
Comment: Limma experiment design and making contrasts
by
kra277
• 0
Thank you very much for this. Much appreciated.
Comment: Limma experiment design and making contrasts
by
Kevin Blighe
72k
Hi, these follow the same principles as formulae used in regression modelling, so, you may want to focus on that (when searching). What lim…
Comment: Limma experiment design and making contrasts
by
kra277
• 0
That is very insightful. Thank you very much for the answer. Also, if I may ask, could you please point me to the articles for understandin…
Comment: Keep values from VCF file into Ensembl VEP annotation
by
brunobsouzaa
▴ 520
Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
Comment: Raw read processing using trimmomatic
by
boczniak767
▴ 740
Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
Comment: should stop codon be counted as part of CDS
by
sullis02
• 0
Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
Comment: How do I compare degree and betweenness centrality for different PPI networks?
by
Istvan Albert
87k
I am not all that knowledgeable of Cytoscapes features and scripting capabilities, but if it does not support that operation you can expo…
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