Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
71 results • Page
1 of 2
Sort: Rank
Rank
Views
Votes
Replies
Filtering for tag:
maker
•
reset
1
vote
1
reply
91
views
Maker2 CDS outside of gene in GFF3
maker
gff3
updated 6 days ago by
Juke34
★ 5.3k • written 6 days ago by
plattsad
• 0
0
votes
2
replies
568
views
Maker Failed while doing repeat masking
maker
annotation
RepBase
RepeatMasker
updated 7 days ago by
lieven.sterck
10k • written 11 months ago by
jamie.pike
▴ 60
0
votes
0
replies
71
views
Augustus training with partial transcriptome?
augustus
maker
maker2
annotation
26 days ago by
DNAlias
▴ 10
0
votes
2
replies
121
views
Interpreting first round of maker
maker
busco
annotation
updated 4 weeks ago by
Dave Carlson
▴ 610 • written 4 weeks ago by
gilsorek12
• 0
0
votes
2
replies
125
views
minimap2 alignment for maker
maker
minimap2
annotation
alignment
7 weeks ago by
gilsorek12
• 0
2
votes
2
replies
142
views
Maker Annotation - multiple gene models give same blastp match
genome
annotation
Maker
updated 8 weeks ago by
lieven.sterck
10k • written 8 weeks ago by
MH85
• 0
2
votes
6
replies
326
views
Transferring Gene Annotations from Assembly with Large Duplications
Exonerate
MAKER
liftOver
assembly
annotation
4 months ago by
Charles Warden
8.0k
1
vote
4
replies
249
views
Maker Annotation Error
maker
annotation
genome
8 months ago by
hydra_questions
▴ 20
1
vote
1
reply
206
views
Maker gene prediction error
gene
maker
annotation
9 months ago by
the_cowa
▴ 40
0
votes
5
replies
241
views
maker tool get stucks forever
annotation
maker
updated 10 months ago by
lieven.sterck
10k • written 10 months ago by
hafiz.talhamalik
▴ 300
2
votes
4
replies
269
views
MAKER2 no FASTAs generated
MAKER
FASTA
fasta_merge
genome annotation
10 months ago by
jamie.pike
▴ 60
0
votes
2
replies
216
views
Does the MAKER pipeline require transcriptional data?
maker
annotation
updated 11 months ago by
lieven.sterck
10k • written 11 months ago by
DNAlias
▴ 10
0
votes
3
replies
223
views
Methods of annotating a genome?
annotation
maker
fgenesh
genome
gene
11 months ago by
jamie.pike
▴ 60
0
votes
0
replies
309
views
adding in new evidence to a Maker annotation job
maker
annotation
Maker
Annotation
12 months ago by
devon.orourke
▴ 40
3
votes
6
replies
234
views
Where to upload protein coding gene annotation ?
maker
protein
updated 12 months ago by
Juke34
★ 5.3k • written 12 months ago by
Picasa
▴ 590
2
votes
13
replies
692
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker
annotation
snap
gene prediction
genomics
12 months ago by
mrmrwinter
▴ 30
1
vote
2
replies
407
views
Maker_functional_gff error "Can't use string ("") as a HASH ref"
maker
functional annotation
blastp
12 months ago by
luca
▴ 50
5
votes
11
replies
753
views
Counting CDS's in Maker output
annotation
maker
cds
est
gene prediction
updated 13 months ago by
Juke34
★ 5.3k • written 13 months ago by
mrmrwinter
▴ 30
0
votes
0
replies
447
views
MAKER command maker2zff produce empty .ann and .dna files
SNAP
genome
Maker
updated 15 months ago by
h.mon
32k • written 16 months ago by
956120746
• 0
0
votes
1
reply
316
views
SnpEff database with maker annotation format
maker
snpeff
updated 16 months ago by
prince26121991
▴ 70 • written 16 months ago by
Picasa
▴ 590
5
votes
8
replies
1.2k
views
Alternatives to RepeatModeler / nseg install fail
annotation
MAKER
updated 16 months ago by
Juke34
★ 5.3k • written 2.1 years ago by
Jake Warner
▴ 810
1
vote
0
replies
358
views
Maker: SNAP training error
genome
maker
annotation
updated 16 months ago by
zx8754
10k • written 16 months ago by
ashaneev07
▴ 20
0
votes
10
replies
2.8k
views
MAKER command maker2zff .ann and .dna files are empty
genome
next-gen
Maker
software error
sequencing
updated 16 months ago by
Juke34
★ 5.3k • written 4.7 years ago by
mks002
▴ 190
7
votes
6
replies
1.6k
views
Genome de novo annotation with Maker
Maker
SNAP
Genome annotation
17 months ago by
alslonik
▴ 180
0
votes
0
replies
369
views
Maker-P supporting software: repeatrunner installation
sequencing
annotation
maker
genome
17 months ago by
ashaneev07
▴ 20
1
vote
4
replies
616
views
Maker Genome Annotation - protein isoforms
maker
genome
annotation
17 months ago by
luca
▴ 50
0
votes
5
replies
583
views
Predicting coding sequence region from GFF with exons + reference genome
genome
annotation
gff
augustus
maker
updated 17 months ago by
Juke34
★ 5.3k • written 17 months ago by
Grey Monroe
▴ 10
2
votes
1
reply
1.7k
views
Option -categorize in SNAP gene prediction.
annotation
snap
maker
updated 18 months ago by
Biostar
20 • written 4.5 years ago by
Picasa
▴ 590
0
votes
0
replies
956
views
Possible precedence issue with control flow operator
Maker
annotation
perl
19 months ago by
ashaneev07
▴ 20
1
vote
1
reply
969
views
Maker (Gene annotation) RepeatMasker error
maker
gene annotation
repeatmasker
19 months ago by
ricardoguerreiro2121
▴ 60
6
votes
8
replies
2.0k
views
RepBase alternative for maker?
genome
annotation
RepBase
Maker
updated 20 months ago by
Charles Warden
8.0k • written 20 months ago by
Colaptes
▴ 50
5
votes
25
replies
1.2k
views
6 follow
Maker Annotation pipeline Output error
maker
annotation
gene
next-gen
updated 20 months ago by
toralmanvar
▴ 910 • written 20 months ago by
ashaneev07
▴ 20
4
votes
5
replies
602
views
maker has been running for a long time
annotation
genome
MAKER
20 months ago by
olechnwin
▴ 30
0
votes
2
replies
1.3k
views
LTR-Harvest false positives (Maker repeat library construction)
annotation
maker
ltr-harvest
updated 23 months ago by
vflorelo
• 0 • written 3.3 years ago by
timo.metz
• 0
0
votes
7
replies
478
views
MAKER installation problem: External Programs
MAKER
updated 23 months ago by
Pierre Lindenbaum
135k • written 23 months ago by
yerspestis
• 0
1
vote
4
replies
941
views
Do you know some script or program to plot the results from Interproscan?
assembly
MAKER
Interproscan
annotation
updated 2.1 years ago by
Buffo
★ 1.8k • written 2.1 years ago by
imda
▴ 10
1
vote
1
reply
408
views
Do you know some scripts to plot MAKER annotation results?
MAKER
annotation
genome
Assembly
2.1 years ago by
imda
▴ 10
14
votes
17
replies
3.3k
views
How to get proteins from GFF file resulted from MAKER annotation
assembly
MAKER
genome
fasta
GFF3
updated 2.2 years ago by
jean.elbers
★ 1.6k • written 2.2 years ago by
imda
▴ 10
1
vote
2
replies
1.8k
views
Filtering GFF annotations file
gff
R
Maker
GFF
2.2 years ago by
alslonik
▴ 180
4
votes
1
reply
1.3k
views
Reviewing Maker annotation
genome
Annotation
Maker
2.3 years ago by
alslonik
▴ 180
3
votes
1
reply
1.3k
views
MAKER genome annotation results confusion
annotation
genome
maker
augustus
updated 2.5 years ago by
Juke34
★ 5.3k • written 2.5 years ago by
imda
▴ 10
0
votes
2
replies
1.0k
views
maker2zff error on run
maker
2.5 years ago by
jferrier
• 0
0
votes
0
replies
1.0k
views
Functional Annotation with Maker
genome
maker
annotation
protein
updated 2.7 years ago by
Ram
32k • written 2.7 years ago by
RBGE-Hillebrandia
• 0
1
vote
1
reply
864
views
Using Abinitio.Pep file vs Pep.all - Annotating using Maker
Maker
SNP
Annotation
Abinitio
2.8 years ago by
ggman
▴ 80
0
votes
2
replies
571
views
MAKER creating huge index files...
MAKER
genome
sequencing
alignment
AUGUSTUS
2.8 years ago by
dan_adams
▴ 20
1
vote
2
replies
866
views
MAKER annotation pipeline output
genome
annotation
MAKER
2.9 years ago by
mss
▴ 40
0
votes
0
replies
842
views
Gene loss in subsequent round of maker for fungal genome annotation
Annotation
Genome Assembly
Maker
3.1 years ago by
urmi208
▴ 30
0
votes
11
replies
2.3k
views
Maker failure on almost all contig
maker
annotation
software error
3.4 years ago by
Rox
★ 1.3k
6
votes
2
replies
4.8k
views
MAKER annotation post processing (AED score)
maker
aed
updated 3.6 years ago by
dfajar2
▴ 90 • written 3.7 years ago by
Picasa
▴ 590
0
votes
0
replies
1.7k
views
MAKER AED score
MAKER
AED-score
RNA-Seq
EVM
annotation
3.7 years ago by
Tye Kahn
▴ 10
71 results • Page
1 of 2
Recent Votes
Answer: How to get GO terms to specific to perticular biological process
Comment: What to put in my Github
Comment: What to put in my Github
Comment: What to put in my Github
Comment: What to put in my Github
Comment: What to put in my Github
Answer: What to put in my Github
Recent Locations •
All
Hyderabad,
3 minutes ago
Germany,
4 minutes ago
Bengaluru,
5 minutes ago
United States,
6 minutes ago
United Kingdom,
6 minutes ago
University Park, USA,
6 minutes ago
France,
7 minutes ago
Recent Awards •
All
Scholar
to
igor
12k
Appreciated
to
Jean-Karim Heriche
24k
Great Question
to
William
★ 4.8k
Teacher
to
geocarvalho
▴ 170
Teacher
to
Michael Dondrup
48k
Scholar
to
JC
12k
Teacher
to
Devon Ryan
98k
Recent Replies
Comment: How to download raw sequence data from GEO/SRA
by
cicindel
▴ 60
I tried to use the SRA toolkit a few months ago, I succesfully installed it and used `prefetch` to get the data, as per their tutorial, but…
Comment: Concatenating fasta files based on prefix ?
by
cpad0112
15k
If each group has `._1_1.txt.fa` and the pattern is exactly same as in OP, try this: ls *1_1.txt.fa | while read line; do echo ${line%…
Comment: Bioinformatics startup market analysis
by
grant.hovhannisyan
★ 2.1k
good luck!
Comment: Bioinformatics startup market analysis
by
gtechbio
▴ 30
Dear @juanjo75es, thank you for your input. We do agree that NGS data/metadata should be more accessible to public, in part also due to ini…
Comment: Bioinformatics startup market analysis
by
gtechbio
▴ 30
Dear @grant.hovhannisyan, thank you for the advice. In fact we are already in touch with two local genomics facilities, though as you have …
Answer: No annotation peaks when running homer
by
geneticatt
▴ 120
Try raising your p-value to make sure that they aren't all just being filtered out by that threshold (which seems pretty low). Edit: I may…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
It looks like the following: system(paste0("mafft --anysymbol --maxiterate 1000 Alignment_output/",GENE,".fa > ",GENE,".mafft.fa")) GE…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
Yes, I am using the following loop first in R to process all the files. This is the code that I am running first: blastn.filelist <- s…
Comment: Bioinformatics startup market analysis
by
grant.hovhannisyan
★ 2.1k
agreed, especially if no private information (names, clinical status, etc) is needed, this information should be freely accessible.
Comment: question when using topgo
by
Kevin Blighe
72k
^^ this
Answer: question when using topgo
by
seidel
7.6k
The GenTable() function has a parameter called *numChar* that controls this: "the GO term definition will be truncated such that only the f…
Comment: why my volcano plot looks strange?
by
cpad0112
15k
is it `log10p` or `-log10p` on y-axis?
Answer: How to get GO terms to specific to perticular biological process
by
geneticatt
▴ 120
See the 'is_a' field in the go.obo file. If you're looking for all subcategories of GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl…
Comment: How to perform multiple alignment using MAFFT?
by
Dunois
▴ 620
What does your `system()` command look like now, after having added `--anysymbol`? I am guessing you added `--anysymbol` right before that …
Comment: How to perform multiple alignment using MAFFT?
by
Ram
32k
Are you using this statement in a loop? If so, please refine your command to error out with the file that produces the error - maybe print …
Traffic: 2745 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6