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Comment: inquiry related to snpsift
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the command:
java -jar SnpSift.jar annotate dbSnp144.vcf variants.vcf > variants_annotated.vcf
I am getting no error.
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Hi there, just to follow up on this, I used your package to generate my volcano plots and got exactly what I was looking for. I now wish to…
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Hi, please show:
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Yeah, you can filter min_cells in Seurat with SCtransform. That would probably change the gene numbers in the SCT assay of the object. I u…
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Doesn't sctransform has a `min_cells` parameter that you could use here? It will only consider genes detected in at least `min_cells` cells…
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With samtools v1.11, ```samtools view -b in.bam chr1 > out.bam``` did not work for me.
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Thanks so much, it is a great suggestion. may I ask you if you know a way to visualize the results of these data in my report? as we are wo…
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I understand that you have whole blood samples and that's why you expect them to have more granulocytes? You could also try the [ENmix][1] …
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I am able to do this. I downloaded the .tar file instead of using conda
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I'll join you. I am not a fan of python either.
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Please pay close attention to [the command I wrote initially][1]. The correct command is `tabix -p vcf GEUVADIS.chr1.genotype.vcf.gz` The `…
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