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517 results • Page
1 of 11
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Filtering for tag:
miRNA
•
reset
1
vote
1
reply
71
views
How to get all microRNA target genes?
miRNA
multimir
microRNA
targetgenes
tarbase
updated 17 hours ago by
i.sudbery
11k • written 1 day ago by
Katarina
▴ 10
0
votes
0
replies
99
views
Job:
Bioinformatician position in RNA biology - Eric Lai lab, MSKCC, NYC
m6A
APA
RNA
miRNA
6 days ago by
laie
▴ 10
0
votes
0
replies
190
views
Job:
Postdoc position in non-coding RNA biology and bioinformatics
RNA
Postdoc
miRNA
lncRNA
Bioinformatics
9 days ago by
heart.lncrna
• 0
1
vote
2
replies
299
views
Why is mapper.pl from mirdeep2 producing an empty mapping file?
mirna
ngs
next-gen
updated 9 days ago by
Yuquan
▴ 10 • written 4 months ago by
halo22
▴ 250
1
vote
2
replies
125
views
miRNA length distribution
miRNA
rna
small
11 days ago by
LynxLynx
• 0
0
votes
0
replies
113
views
miRDeep2 Support
miRNA
mirDeep2
12 days ago by
VineethVenumadhavan
▴ 30
0
votes
2
replies
118
views
Tabix file format
MatrixeQTL
Tabix
miRNA
13 days ago by
anshulmbi
▴ 30
1
vote
9
replies
279
views
calculate statistically significant miRNA and mRNA target pairs using pearsons correlation
miRNA
correlation
pearson
miRNA-mRNA
updated 4 weeks ago by
i.sudbery
11k • written 4 weeks ago by
shaden
• 0
0
votes
1
reply
101
views
Why is my miRNA-seq mapping rate so low?
sequencing
miRNA
miRNA-seq
RNA-Seq
4 weeks ago by
cecilomar6
• 0
0
votes
1
reply
148
views
Create a regulatory network between exosomal and endogenous miRNAs
miRNA
Exosomal
endogenous
piRNA
smallRNA-seq
updated 4 weeks ago by
Elucidata
▴ 240 • written 5 weeks ago by
diego1530
▴ 40
0
votes
6
replies
179
views
What are the best quantification tools for miRNA seq?
miRNA
RNA-Seq
Salmon
miRNA-seq
6 weeks ago by
cecilomar6
• 0
0
votes
1
reply
124
views
where to download proprietary miRNA software
mirna
updated 7 weeks ago by
Michael Dondrup
48k • written 7 weeks ago by
972050141
• 0
0
votes
0
replies
98
views
get miRNA expression form total RNA data
RNA-Seq
miRNA
9 weeks ago by
aminijavad4
• 0
0
votes
0
replies
88
views
ShortStack input files recommendation
sRNA
ShortStack
miRNA
updated 9 weeks ago by
Biostar
20 • written 9 weeks ago by
candron
▴ 10
0
votes
4
replies
127
views
starbase is not available
starbase
lncrna
mirna
cerna
10 weeks ago by
cagdas
▴ 10
0
votes
1
reply
287
views
predict miRNA-lncRNA interaction based on lncRNA sequence
lncRNA
miRNA
updated 11 weeks ago by
cagdas
▴ 10 • written 9 months ago by
robinycfang
▴ 10
0
votes
1
reply
167
views
Interaction Network Cytoscape
cytoscape
network
miRNA
gene
updated 11 weeks ago by
scooter
▴ 440 • written 12 weeks ago by
biostar.name
• 0
2
votes
1
reply
174
views
Gene size correction for small RNA
small RNA
miRNA
RNA-Seq
normalization
updated 11 weeks ago by
dsull
★ 1.8k • written 11 weeks ago by
avelarbio46
▴ 10
1
vote
2
replies
1.1k
views
Identifying 5p and 3p in miRNA isoform expression data from TCGA for feature selection
tcga
microrna
mirna
isoform
data processing
updated 11 weeks ago by
andresllucena
• 0 • written 2.5 years ago by
jiaqiwu
▴ 10
4
votes
0
replies
121
views
How to filter miRNAs from `NanoString nCounter` assay?
NanoString
mRNA
miRNA
nCounter
filter
3 months ago by
dare_devil
★ 1.4k
0
votes
0
replies
98
views
miRDeep2 discovers different novel miRNAs in each run
mirdeep2
novel miRNA
miRNA
3 months ago by
Rituriya
▴ 40
2
votes
3
replies
197
views
How does miRdeep2 normalise sequences
miRNA
sequencing
miRDeep2
updated 3 months ago by
ATpoint
47k • written 3 months ago by
K.patel5
▴ 30
3
votes
2
replies
353
views
Create a new network that uses miRNA-gene and gene-gene interactions to link a list of miRNAs with a list of mRNAs.
cytoscape
miRNA
gene
mRNA
network
updated 4 months ago by
scooter
▴ 440 • written 4 months ago by
shamrock24_2000
▴ 10
2
votes
4
replies
159
views
Is miarma-Seq being maintained?
miarma-Seq
miRNA
RNA-Seq
4 months ago by
RNAseqer
▴ 150
0
votes
0
replies
285
views
interaction prediction of circRNA and miRNA and co -expression network
miRNA
circRNA
coexpression
RNA-Seq
NGS
4 months ago by
Thind amarinder
▴ 130
1
vote
2
replies
1.4k
views
Bowtie1 Options For Mirna
mirna
updated 4 months ago by
Biostar
20 • written 7.1 years ago by
Varun Gupta
★ 1.2k
1
vote
1
reply
170
views
Is it possible to extract miRNAs from RNA seq data?
miRNA
mRNA
RNA-seq
4 months ago by
abdul.suboor123
• 0
2
votes
6
replies
237
views
Databases miRNA sequencing data
RNA-Seq
miRNA
database
4 months ago by
lenC_biotecLover
▴ 30
0
votes
3
replies
707
views
Job:
Master internship in bioinformatics: Inference of single-cell miRNA-seq data in cancer (to be followed by PhD)
miRNA
single cell RNA-seq
R
cancer
Job
updated 5 months ago by
linnaeusbundalian
• 0 • written 6 months ago by
laurent.guyon
▴ 40
0
votes
0
replies
226
views
Different miRNA id but same sequence
miRNA
smallRNA
ncRNA
sequencing
updated 5 months ago by
Biostar
20 • written 7 months ago by
vg_2437
• 0
1
vote
5
replies
1.6k
views
CCLE miRNA expression data
CCLE
miRNA
Nanostring
updated 6 months ago by
venugopal887
• 0 • written 23 months ago by
baris.blknt
• 0
3
votes
5
replies
286
views
TCGA- which files to download for analyzing differentially expressed miRNAs
RNA-Seq
sequencing
mirna
tcga
DESEQ2
6 months ago by
ginny
• 0
1
vote
1
reply
213
views
Liquid Biopsy datasets
RNA-Seq
next-gen
liquid biopsy
miRNA
cDNA
7 months ago by
pacocp
• 0
0
votes
1
reply
254
views
What does the (norm) suffix mean in the miRDeep2 quantifier.pl output file?
miRNA
miRDeep2
RNA-Seq
updated 7 months ago by
JC
12k • written 7 months ago by
Nicolai Skovbjerg Arildsen
• 0
2
votes
6
replies
1.5k
views
Oligo: GeneChip miRNA 4.0 analysis only returns control probes
Oligo
miRNA
R
updated 7 months ago by
anand
• 0 • written 2.1 years ago by
Keiron O'Shea
▴ 10
4
votes
5
replies
363
views
miRNA normalization workflow
miRNA
TCGA
machine learning
normalization
R
7 months ago by
lenC_biotecLover
▴ 30
0
votes
1
reply
236
views
miRNA - most reliable pipeline for differential expression analysis
miRNA
8 months ago by
memento1984_1
• 0
0
votes
1
reply
320
views
Is there a good reference matrix for miRNA array deconvolution?
miRNA
microarray
deconvolution
updated 8 months ago by
xinyiy027
• 0 • written 11 months ago by
RNAseqer
▴ 150
0
votes
2
replies
285
views
ceRNA network identification
RNA-Seq
miRNA
mRNA
updated 8 months ago by
Biostar
20 • written 8 months ago by
xinhui.wang
▴ 330
2
votes
2
replies
271
views
Which miRNA/RNA website/database are these images from?
RNA-Seq
miRNA
website
Correlation
expression
8 months ago by
chenjoe569
• 0
2
votes
3
replies
228
views
How to mass identify the given miRNA sequences?
mirna
8 months ago by
spiritedaway89
• 0
0
votes
1
reply
369
views
getting all plants r/t/sn/sno/RNAs from Rfam
Rfam
miRNA
updated 9 months ago by
Biostar
20 • written 15 months ago by
z.zangishei
• 0
0
votes
2
replies
375
views
How to get gene and microRNA expression profiles for specific type of cancers from The Cancer Genome Atlas (TCGA)?
TCGA
gene
mirna
updated 9 months ago by
patelk26
▴ 230 • written 9 months ago by
ahmedmelmoselhy
▴ 20
1
vote
2
replies
257
views
Annotation for miRNA-seq data analysis
mirna
hisat
ensembl
RNA-Seq
Assembly
updated 9 months ago by
Astrid_Ensembl
▴ 330 • written 9 months ago by
Arindam Ghosh
▴ 360
0
votes
0
replies
200
views
How to specify -s option in RNAhybrid to predict miRNA targets?
miRNA
rna-seq
sequence
RNAhybrid
10 months ago by
tianshenbio
▴ 90
0
votes
2
replies
182
views
no alignment from plasma derived small RNA
mirna
bwa
alignment
deseq2
10 months ago by
memento1984_1
• 0
0
votes
1
reply
208
views
Prediction of lnRNA interaction with all posible miRNA in Humans.
RNA-Seq
RNA
lnRNA
miRNA
bioinformatics
10 months ago by
Talarash0
• 0
3
votes
3
replies
268
views
How to do filtering of expression values for miRNA data analysis
mirna
bi-weight average
10 months ago by
nkabo
▴ 50
0
votes
0
replies
336
views
small RNA Workflow
RNA-Seq
miRNA
smallRNA
bioinformatics
10 months ago by
VineethVenumadhavan
▴ 30
2
votes
6
replies
219
views
How to get RNA data from whole genome sequencing data
whole genome sequencing
circRNA
miRNA
10 months ago by
rick42
• 0
517 results • Page
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Recent Votes
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C: Variant Calls: Freebayes vs GATK
A: FreeBayes vs GATK's HaplotypeCaller
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Recent Replies
Comment: FreeBayes vs GATK's HaplotypeCaller
by
cicindel
▴ 70
I think file size, based on the following sentence.
Comment: How to perform multiple alignment using MAFFT?
by
Ram
32k
I don't see `GENE` being assigned values, so I'm guessing there is yet another loop wrapping the code above. Write the value of `GENE` to s…
Comment: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
by
cicindel
▴ 70
Interesting, I did not think about it like that. Tablet has several colour schemes in the 2nd tab (I think) to visualize different features…
Answer: Trimmomatic-0.36 not finding adapter directory
by
Istvan Albert
87k
Download the adapters and use them by passing the actual path, existing paths to the adapter file. See the adapters here https://git…
Comment: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
by
Istvan Albert
87k
in all fairness, Tablet did not exist when this thread was started. It is quite impressive that Tablet is still operational though, I gave …
Comment: Trimmomatic-0.36 not finding adapter directory
by
GenoMax
99k
Order of `fastq` file names is important for `trimmomatic`. Make sure that is correct.<br> Does `ls -lh /usr/local/bin/Trimmomatic-0.36/` …
Answer: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
by
cicindel
▴ 70
No love for [Tablet][1]? I'm quite surprised to not see it mentioned here. Of course, IGV is the classic, and Tablet is a bit simpler than …
Comment: How to download raw sequence data from GEO/SRA
by
cicindel
▴ 70
I tried to use the SRA toolkit a few months ago, I succesfully installed it and used `prefetch` to get the data, as per their tutorial, but…
Comment: Concatenating fasta files based on prefix ?
by
cpad0112
15k
If each group has `._1_1.txt.fa` and the pattern is exactly same as in OP, try this: ls *1_1.txt.fa | while read line; do echo ${line%…
Comment: Bioinformatics startup market analysis
by
grant.hovhannisyan
★ 2.1k
good luck!
Comment: Bioinformatics startup market analysis
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gtechbio
▴ 30
Dear @juanjo75es, thank you for your input. We do agree that NGS data/metadata should be more accessible to public, in part also due to ini…
Comment: Bioinformatics startup market analysis
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gtechbio
▴ 30
Dear @grant.hovhannisyan, thank you for the advice. In fact we are already in touch with two local genomics facilities, though as you have …
Answer: No annotation peaks when running homer
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geneticatt
▴ 120
Try raising your p-value to make sure that they aren't all just being filtered out by that threshold (which seems pretty low). Edit: I may…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
It looks like the following: system(paste0("mafft --anysymbol --maxiterate 1000 Alignment_output/",GENE,".fa > ",GENE,".mafft.fa")) GE…
Comment: How to perform multiple alignment using MAFFT?
by
anikcropscience
▴ 40
Yes, I am using the following loop first in R to process all the files. This is the code that I am running first: blastn.filelist <- s…
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