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Showing top results for tag:
normalization
•
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0
votes
0
replies
34
views
Error : Fail to open file file.vcf for normalization with vt
normalization
vt
vcf
18 hours ago by
Sar
• 0
0
votes
1
reply
113
views
TMM normalization for data across two sequencing batches
tmm
normalization
rnaseq
updated 5 days ago by
ATpoint
48k • written 6 days ago by
wiscoyogi
▴ 20
5
votes
7
replies
260
views
Data normalization
normalization
RNA-seq
7 days ago by
nolwenn
▴ 10
3
votes
5
replies
249
views
normalize different size fastq files
metagenome
data
genomics
normalization
10 days ago by
saraswati.awasthi22
• 0
0
votes
0
replies
75
views
NormFinder Error
Normalization
R-Studio
RNASeq
17 days ago by
far.zi
▴ 10
0
votes
0
replies
112
views
Normalization for WGCNA on two organisms (virus-host)
RNA-Seq
DESeq2
WGCNA
Normalization
updated 29 days ago by
Biostar
20 • written 5 weeks ago by
robert.buecking
• 0
4
votes
6
replies
159
views
Weird MAplot with DEGs lying along the diagonals
microarray
maplot
normalization
agilent
updated 4 weeks ago by
rpolicastro
5.1k • written 4 weeks ago by
federicoalessandro.ruffinatti
▴ 20
0
votes
0
replies
73
views
need advice for comparing fragment counts of genes across multiple WGS metagenomes
WGS
normalization
KMA
4 weeks ago by
sapuizait
• 0
0
votes
3
replies
127
views
best transformation for large RNAseq dataset
RNA-Seq
DESeq2
normalization
transformation
VST
6 weeks ago by
loipf
• 0
0
votes
0
replies
109
views
How RNAseq input file for ssGSAE should be normalized?
ssGSEA
gene length
normalization
6 weeks ago by
Rahil
▴ 180
2
votes
9
replies
525
views
Which normalization method/pipeline is best to generate normalized counts to make different single cell experiments comparable
single cell
normalization
updated 6 weeks ago by
Mensur Dlakic
★ 10k • written 6 weeks ago by
amjass
▴ 20
0
votes
2
replies
136
views
Compare pathway activation across microarray datasets?
microarray
normalization
scores
7 weeks ago by
thyleal
▴ 150
1
vote
6
replies
153
views
RNASeq datasets with different total counts
rna seq
normalization
updated 7 weeks ago by
agata88
▴ 810 • written 7 weeks ago by
felipead66
▴ 80
0
votes
2
replies
147
views
Normalize bulk-rna seq with median of ratios and DEseq2
rna-seq
normalization
DEseq2
9 weeks ago by
anael.cain
• 0
0
votes
1
reply
132
views
Comparing ChIP-seq data sets for different mutants
ChIP-Seq
IGV
Normalization
updated 10 weeks ago by
ATpoint
48k • written 10 weeks ago by
Mischa
• 0
0
votes
2
replies
166
views
RNAseq count - normalization
RNA-Seq
expression
vst
normalization
counts
11 weeks ago by
sabin
▴ 30
3
votes
12
replies
299
views
How to confirm if VCF file is normalized and Left aligned ?
vcf
bcftools
normalization
alignment
ukbb
11 weeks ago by
nobody
• 0
2
votes
1
reply
178
views
Gene size correction for small RNA
small RNA
miRNA
RNA-Seq
normalization
updated 12 weeks ago by
dsull
★ 1.8k • written 12 weeks ago by
avelarbio46
▴ 10
0
votes
0
replies
147
views
Using ATACseq CPM for clustering samples
ATAC-seq
normalization
clustering
12 weeks ago by
barati
• 0
0
votes
1
reply
1.5k
views
How to get the normalized counts matrix EDASeq ?
RNA-Seq
normalization
within lane normalization
updated 12 weeks ago by
1206035926
• 0 • written 4.1 years ago by
debitboro
▴ 200
0
votes
0
replies
131
views
Normalizing data from GEO dataset
normalization
R
RNA-Seq
vst
featureselection
3 months ago by
lenC_biotecLover
▴ 30
0
votes
0
replies
181
views
Analysis of a batch-normalized expression dataset
R
Normalization
WGCNA
GSEA
3 months ago by
DaveD
• 0
0
votes
4
replies
312
views
ChIP-seq normalization method when global loss of signal is expected.
ChIP-Seq
normalization
updated 3 months ago by
Rory Stark
★ 1.0k • written 3 months ago by
crimacar
• 0
4
votes
3
replies
253
views
Clustering/Hetamap of count RNAseq data
RNA-Seq
Normalization
updated 4 months ago by
ATpoint
48k • written 4 months ago by
english.server
▴ 240
1
vote
0
replies
205
views
How to do a normalization onto mtRNAs
mtRNA
normalization
rna-seq
updated 4 months ago by
Biostar
20 • written 5 months ago by
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
150
views
Do different cells transcribe different amounts of gene data?
genome
gene
normalization
updated 4 months ago by
igor
12k • written 4 months ago by
dominique.c.a.paul
• 0
0
votes
1
reply
226
views
Normalization method to be used when dealing with multiple datasets
Normalization
Meta-analysis
updated 4 months ago by
ATpoint
48k • written 4 months ago by
vipulwagh31
▴ 10
0
votes
1
reply
206
views
RNA-seq batches across different tissues
RNA-Seq
Normalization
5 months ago by
ATCG
▴ 300
0
votes
1
reply
582
views
Should I normalize individually or after merging all the data?
scRNA
normalization
seurat
scale
qc
5 months ago by
SupBioInformatics
▴ 30
1
vote
7
replies
342
views
Normalize FPKM values for cross-sample comparisons?
FPKM
RNA-Seq
Normalization
5 months ago by
cindy.perscheid
▴ 100
4
votes
6
replies
266
views
Differential Expression Analysis in Single cell RNAseq
single-cell RNAseq
methods
normalization
5 months ago by
asumani
▴ 70
0
votes
0
replies
312
views
Comparison of ratio of expression between two genes across samples
RNA-Seq
TPM
normalization
relative abundance
5 months ago by
guillepalou4
▴ 10
0
votes
0
replies
280
views
Calculating FC on probabilistic quotient normalization (PQN) data
fold change
statistics
normalization
updated 5 months ago by
Biostar
20 • written 7 months ago by
bridget.tripp
• 0
0
votes
0
replies
200
views
Samples spiked in libary sizes using DESeq2 normalization
DESeq2
normalization
5 months ago by
asrour
• 0
5
votes
7
replies
534
views
Data transformation/normalization/scaling for machine learning using both RNA-Seq and Microarray data
rna-seq
microarray
normalization
transformation
updated 6 months ago by
Mensur Dlakic
★ 10k • written 6 months ago by
Felipe Colombelli
▴ 10
2
votes
2
replies
277
views
Bray-Curtis dissimilarity for comparing genomes, how to normalize?
genome
mummer
bray-curtis
normalization
sorensen
6 months ago by
Buffo
★ 1.8k
0
votes
0
replies
257
views
How to normalize between samples in WGS metagenomics
Metagenomics
shotgun metagenomics
Normalization
6 months ago by
plicht
• 0
1
vote
2
replies
538
views
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq
TPM
normalization
updated 7 months ago by
ATpoint
48k • written 7 months ago by
Thind amarinder
▴ 130
0
votes
6
replies
378
views
How to Identify Housekeeping genes from gene expression matrix and normalize the data
housekeeping genes
normalization
R
edger
limma
7 months ago by
bioyas
• 0
0
votes
1
reply
259
views
Normalizing Two Datasets on Different Platforms For DEG Analysis
RNA-Seq
normalization
Affymetrix datasets
7 months ago by
chiagozieduru
• 0
1
vote
2
replies
581
views
Getting different values from deeptools bamCoverage CPM normalization, and from manually normalizing using samtools mpileup
deeptools
ATAC-seq
bamCoverage
normalization
CPM
updated 7 months ago by
ATpoint
48k • written 7 months ago by
rjd254
• 0
4
votes
2
replies
1.3k
views
DESeq2: vst() and varianceStabilizingTransformation()
RNA-Seq
sva
R
normalization
updated 7 months ago by
Kevin Blighe
72k • written 7 months ago by
lenC_biotecLover
▴ 30
45
votes
24
replies
4.3k
views
9 follow
ATAC-seq sample normalization
ChIP-Seq
atac-seq
normalization
updated 7 months ago by
ATpoint
48k • written 16 months ago by
Flo
▴ 120
1
vote
4
replies
561
views
Best normalization method to use with ChIP-seq counts
chip-seq
normalization
counts
featurecounts
edger
updated 7 months ago by
ATpoint
48k • written 7 months ago by
science_lizard
• 0
0
votes
6
replies
429
views
DESeq2: Transform count data by VST and Covariates
RNA-Seq
DESeq2
Covariates
Normalization
7 months ago by
fisher.w.daniel
• 0
1
vote
2
replies
754
views
DESeq2 vst function error
DESeq2
RNA-Seq
R
normalization
updated 8 months ago by
Kevin Blighe
72k • written 8 months ago by
lenC_biotecLover
▴ 30
4
votes
5
replies
369
views
miRNA normalization workflow
miRNA
TCGA
machine learning
normalization
R
8 months ago by
lenC_biotecLover
▴ 30
1
vote
4
replies
1.1k
views
different between SCTransform and NormalizeData
R
scRNA-seq
Normalization
SCTransform
8 months ago by
re_raz
• 0
0
votes
0
replies
491
views
Spike-in normalization with Cut&Tag data
deeptools
normalization
ChIP-Seq
cutandtag
8 months ago by
hina.abbas.bandukwala
• 0
0
votes
1
reply
446
views
Normalization for comparing expression statistics across sample and gene groups
RNA-Seq
normalization
gene sets
updated 8 months ago by
kristoffer.vittingseerup
★ 3.5k • written 12 months ago by
endre.sebestyen
▴ 10
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