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Filtering for tag:
orthomcl
•
reset
15
votes
40
replies
12k
views
16 follow
Tutorial:
Easy way to run easily orthoMCL (Copy & paste)
run
easy
orthomcl
all-v-all
mcl
Tutorial
updated 5 months ago by
Buffo
★ 1.8k • written 4.8 years ago by
Esaie
▴ 140
2
votes
8
replies
2.9k
views
Orthomclblastparser Problems In Orthomcl Programs
orthomcl
updated 7 months ago by
Md
• 0 • written 7.9 years ago by
wang.qiang.prc
• 0
0
votes
3
replies
2.1k
views
Orthomcl Outputs Just Inparalogs
orthomcl
updated 9 months ago by
pooja.singh09
• 0 • written 7.3 years ago by
alison.sara.waller
• 0
0
votes
0
replies
309
views
orthomcl to venn diagram
orthomcl
family genes
ortholog
venn diagram
9 months ago by
Ric
▴ 350
0
votes
1
reply
242
views
Python & orthomcl parsing output
orthomcl
python
11 months ago by
sxd
• 0
0
votes
0
replies
709
views
How to go from proteome of species A and compare genes to species B
RNA-Seq
orthologous pairs
orthoMCL
proteome
dN/dS
updated 17 months ago by
Biostar
20 • written 3.2 years ago by
hudak7
• 0
4
votes
5
replies
768
views
HMMER vs OrthoMCL vs Blast: When to use what for finding gene groups
gene families
similarity
blast
orthomcl
updated 20 months ago by
Mensur Dlakic
★ 10k • written 20 months ago by
Ace
▴ 80
0
votes
0
replies
453
views
Problem with running OrthoMCL: orthomclPairs stuck at sending data
orthoMCL
genome
20 months ago by
jenny
• 0
1
vote
5
replies
675
views
Orthomcl from anaconda, error
ortologues
orthomcl
20 months ago by
lhernanj
• 0
10
votes
6
replies
6.0k
views
How To Extract The Core Genes From The Orthomcl Output File?
orthomcl
updated 21 months ago by
Dattatray Mongad
▴ 350 • written 7.1 years ago by
Lisa
▴ 320
6
votes
8
replies
3.2k
views
Error: Missign value where TRUE/FALSE needed when using rbind in R
OrthoMCL
R
SQL
updated 21 months ago by
Biostar
20 • written 3.8 years ago by
AsoInfo
▴ 300
6
votes
10
replies
1.1k
views
DBI connect failed: orthomclLoadBlast
orthomcl
mcl
sequence
protein
2.0 years ago by
max_19
▴ 150
1
vote
2
replies
1.3k
views
Phylogeny from incomplete orthogroups
RNA-Seq
Phylogenetics
OrthoMCL
Orthogroups
updated 2.5 years ago by
Biostar
20 • written 4.4 years ago by
shelkmike
▴ 420
0
votes
1
reply
4.1k
views
orthomcl error: DBD::mysql::st execute failed: The table 'SimilarSequences' is full at ***
cluster
orthomcl
updated 2.8 years ago by
h.mon
32k • written 6.3 years ago by
yangyongzhi2008
▴ 30
1
vote
4
replies
1.7k
views
DBD::mysql::st execute failed: The table 'InplgOrthoInplg
orthomcl
ortho
ubuntu
bioinformatics
mysql
updated 2.8 years ago by
Ram
32k • written 2.8 years ago by
wocana
▴ 20
5
votes
11
replies
2.1k
views
OrthoMCL issue with BLAST and mySQL
orthomcl
BLASTALL
BLAST
ortholog clustering
mySQL
updated 2.9 years ago by
hudak7
• 0 • written 3.2 years ago by
merwright
• 0
7
votes
23
replies
6.2k
views
7 follow
Tutorial:
OrthoMCL installation on Ubuntu Linux
orthomcl
ubuntu
linux
mysql
Tutorial
2.9 years ago by
Vimal Kumar Velayudhan
▴ 200
0
votes
2
replies
1.1k
views
Script error when extracting sequences of a list of orthologous groups
bash
orthomcl
software error
blast
updated 3.0 years ago by
ahmedmagds
• 0 • written 4.1 years ago by
Santiago Montero-Mendieta
▴ 130
0
votes
3
replies
655
views
error in orthoBlastParser
orthoMCl
OrthoBlastParser
Tool
updated 3.0 years ago by
Philipp Bayer
6.9k • written 3.0 years ago by
vjain
• 0
1
vote
7
replies
2.5k
views
Problem About Orthomclblastparser
orthomcl
updated 3.0 years ago by
vjain
• 0 • written 7.7 years ago by
yogi.bioinfo
▴ 10
2
votes
5
replies
733
views
orthoMCLInstallSchema error : cant form a databse
orthoMCL
Termial
updated 3.0 years ago by
Mehmet
▴ 670 • written 3.0 years ago by
vjain
• 0
3
votes
4
replies
3.3k
views
How To Determine The Core Genome From The Orthomcl Output
genome
orthomcl
orthologues
updated 3.3 years ago by
Biostar
20 • written 9.1 years ago by
Juliana Soto
▴ 50
0
votes
1
reply
1.1k
views
ncbi blast results not compatible with OrthoMCL program
blast
OrthoMCL
3.7 years ago by
xiachongjing
▴ 10
3
votes
5
replies
1.5k
views
OrthoMCL step 12: [mclxReadDimensions] could not parse header
OrthoMCL
error
3.9 years ago by
jmah
▴ 10
1
vote
2
replies
1.7k
views
orthomclInstallSchema issue in OrthoMCL program
OrthoMCL
3.9 years ago by
wangdp123
▴ 250
2
votes
1
reply
2.2k
views
Pan and core Genome prediction from OrthoMCL output
pangenome
core genome
mcl
orthomcl
updated 4.3 years ago by
Joe
19k • written 4.3 years ago by
akhilvbioinfo
▴ 160
0
votes
4
replies
1.8k
views
OrthoMcl - Orthologs.txt is empty. All output is present in inParalogs.txt
orthomcl
orthologs
orthomcl orthogroup
updated 4.5 years ago by
Biostar
20 • written 5.5 years ago by
bioinfoSeeker
▴ 20
0
votes
1
reply
1.8k
views
orthomclpairs table lock size error
orthomcl
sql
clustering
updated 4.5 years ago by
GenoMax
99k • written 4.5 years ago by
spaul8505
▴ 20
3
votes
4
replies
1.4k
views
Finding orthologs of 100 human genes in 44 insect transcriptomes
orthofinder
orthomcl
updated 4.5 years ago by
david_emms
▴ 110 • written 4.7 years ago by
anuj2054
• 0
2
votes
13
replies
2.7k
views
Error running OrthoMCL
orthoMCL
MySQL
updated 4.7 years ago by
Nari
▴ 900 • written 4.7 years ago by
johane92
• 0
1
vote
2
replies
1.5k
views
How can I specify my proteins gene to orthoMCL
orthoMCL
protein
transcript
updated 4.8 years ago by
natasha.sernova
★ 3.8k • written 4.8 years ago by
Esaie
▴ 140
5
votes
4
replies
3.6k
views
How can I run All-v-all BLAST
blast
All-v-all BLAST
orthoMCL
updated 4.8 years ago by
ALchEmiXt
★ 1.9k • written 4.8 years ago by
Esaie
▴ 140
0
votes
1
reply
1.6k
views
rerun orthomcl when I updata mysql
orthomcl
mysql
Tool
updated 4.9 years ago by
Philipp Bayer
6.9k • written 4.9 years ago by
1291016966
• 0
0
votes
0
replies
879
views
How to deal with the masking sequences when analyze the orthologus gene pairs using orthomcl?
RNA-Seq
masked
orthomcl
5.1 years ago by
liuhui
▴ 20
8
votes
19
replies
11k
views
9 follow
Tutorial:
A:orthomcl with local mysql server on linux server, complete install
orthomcl
mysql
no root
local
Tutorial
updated 5.3 years ago by
Mehmet
▴ 670 • written 6.4 years ago by
Lesley Sitter
▴ 560
0
votes
1
reply
1.4k
views
Orthomcl Pairs
orthomcl
updated 5.3 years ago by
Biostar
20 • written 9.0 years ago by
jollymrt
▴ 10
0
votes
1
reply
2.5k
views
Error Using Mysql For Orthomcl
mysql
perl
orthomcl
linux
updated 5.4 years ago by
sckinta
▴ 610 • written 7.4 years ago by
yogi.bioinfo
▴ 10
5
votes
11
replies
5.7k
views
orthomcl error: The total number of locks exceeds the lock table size at orthomclPairs
orthomcl
mysql
updated 5.5 years ago by
Jean-Karim Heriche
24k • written 5.5 years ago by
sckinta
▴ 610
2
votes
2
replies
1.8k
views
Where can I find the Interpro/OrthoMCL annotation of all the proteins of a species?
genome
interpro
annotation
orthomcl
5.5 years ago by
cyril-cros
▴ 910
3
votes
4
replies
2.2k
views
[orthomcl] Proteins with more than one predicted ortholog
orthomcl
orthologs
evalue
updated 5.7 years ago by
Jean-Karim Heriche
24k • written 5.7 years ago by
gustavoborin01
▴ 60
1
vote
1
reply
1.5k
views
Sequences number of Orthomcl results (groups.txt) were lower than raw data (fasta file)
Orthomcl
updated 5.7 years ago by
DG
7.2k • written 5.7 years ago by
Ginsea Chen
▴ 130
6
votes
3
replies
3.1k
views
Sample ORTHOMCL run on my Fasta file.
orthomcl clustering
orthoMCL
genome
sequence
5.9 years ago by
Nari
▴ 900
0
votes
1
reply
3.1k
views
Processing OrthoMCL output file, "groups.txt" to create a venn diagram
OrthoMCL
Core genome
orthologs
genome comparison
6.1 years ago by
jc_0919
• 0
0
votes
2
replies
2.4k
views
Orthomclloadblast-----Orthomcl Problems
orthomcl
updated 6.3 years ago by
Ginsea Chen
▴ 130 • written 7.9 years ago by
wang.qiang.prc
• 0
0
votes
2
replies
1.9k
views
Orthomclpairs Problems -----Orthomcl
orthomcl
updated 6.4 years ago by
Peter vH
▴ 130 • written 7.9 years ago by
wang.qiang.prc
• 0
7
votes
5
replies
7.3k
views
What OrthoMCL input file and output looks like?
orthomcl
clustering-algorithms
updated 6.6 years ago by
Chrispin Chaguza
▴ 260 • written 6.6 years ago by
Nari
▴ 900
0
votes
4
replies
3.1k
views
How to obtain the statistics of the OrthoMCL output file
orthomcl
updated 6.6 years ago by
amanjain
• 0 • written 6.9 years ago by
javo.vc
• 0
1
vote
6
replies
2.5k
views
How Many Sequences That Can Run On Stand Alone Orthomcl V.1.4 ?
orthomcl
updated 6.6 years ago by
yuchengzhang
• 0 • written 9.4 years ago by
Winmicro40
• 0
1
vote
2
replies
2.8k
views
Orthomcl or CD-HIT for Protein Clustering.
clustering
cd-hit
orthomcl
7.0 years ago by
Nari
▴ 900
8
votes
23
replies
6.7k
views
11 follow
Orthomcl Incompatibility With Mysql5.5.20
orthomcl
mysql
updated 7.2 years ago by
kmkocot
• 0 • written 8.8 years ago by
RT
▴ 350
67 results • Page
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