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327 results • Page
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Filtering for tag:
pathway
•
reset
0
votes
0
replies
60
views
Pathway enrichment analysis vs GSEA for single cell RNA sequencing data analysis
GSEA
pathway
scRNAseq
7 days ago by
aa123
• 0
0
votes
1
reply
1.6k
views
KEGG Reconstruct Pathway: More Efficient Usage
Kegg
Pathway
genome
updated 25 days ago by
Biostar
20 • written 3.7 years ago by
taylrtam
• 0
0
votes
0
replies
94
views
What are the various KEGG pathway interaction types?
kegg
pathway
systems biology
R
graphite
5 weeks ago by
chaperoneline
• 0
67
votes
32
replies
9.6k
views
17 follow
Tutorial:
Enrichment Analysis, Clustering and Scoring with pathfindR
R
pathway
enrichment
active subnetwork
Tutorial
updated 6 weeks ago by
volkanergin
• 0 • written 2.8 years ago by
egeulgen
★ 1.1k
0
votes
1
reply
276
views
overlay of DE data on reactome pathway
pathway
updated 7 weeks ago by
darklings
▴ 220 • written 14 months ago by
kanwarjag
★ 1.1k
0
votes
2
replies
216
views
GO and KEGG pathway analysis of lncRNA genes
GO
lncRNA
clusterProfiler
KEGG
pathway
11 weeks ago by
basuanubhav
▴ 10
4
votes
6
replies
176
views
genes not mapping to ENTREZID
gene
ENTREZID
pathway
KEGG
written 12 weeks ago by
adR
▴ 50
0
votes
0
replies
171
views
How do I get differentially regulated pathways from iDEP/ GSEA?
idep
gsea
pathway
deg
3 months ago by
lakshmi9c
▴ 10
3
votes
3
replies
254
views
Kegg annotation for gene
KEGG
gene
pathway
R
python
updated 3 months ago by
xanderpico
▴ 350 • written 3 months ago by
ehruan
▴ 10
4
votes
11
replies
264
views
How upstream is a gene in any of it's pathway ?
RNA-Seq
R
gene
Pathway
5 months ago by
pacome.pr
▴ 100
5
votes
3
replies
231
views
Gene list pathway classification and visualization
genome
gene
pathway
5 months ago by
aguiller.mateos
▴ 10
0
votes
0
replies
198
views
Signal pathway impact analysis
R
pathway
updated 5 months ago by
Biostar
20 • written 6 months ago by
adR
▴ 50
23
votes
16
replies
4.1k
views
8 follow
Tool:
pathfindR - Enrichment Analysis using Active Subnetworks
R
pathway
active subnetwork
enrichment
Tool
6 months ago by
egeulgen
★ 1.1k
0
votes
0
replies
154
views
Reactome for Plants
pathway
gene
annotation
6 months ago by
Ric
▴ 350
0
votes
0
replies
172
views
Non redundant ID associating with GO and Pathway
alignment
GO
pathway
7 months ago by
Ric
▴ 350
65
votes
24
replies
14k
views
14 follow
Mapping Snps To Pathways
snp
genotyping
pathway
gene
enrichment
updated 7 months ago by
Biostar
20 • written 11.1 years ago by
Pierre Lindenbaum
135k
0
votes
0
replies
173
views
ncRNA pathway analysis
pathway
ncRNA
7 months ago by
kanwarjag
★ 1.1k
5
votes
3
replies
491
views
optimal size of gene sets for fgsea analysis
fgsea
pathway
updated 7 months ago by
alserg
▴ 680 • written 7 months ago by
ayuhutamisyarif5
• 0
0
votes
0
replies
335
views
how to obtain the abundance of superclass pathway of MetaCyc when using humann2 to do function analysis
humann2
MetaCyc
pathway
7 months ago by
zhangdengwei
▴ 140
2
votes
2
replies
236
views
pathway analysis in plants
Assembly
gene
annotation
analysis
pathway
updated 7 months ago by
toralmanvar
▴ 910 • written 7 months ago by
Ric
▴ 350
1
vote
2
replies
228
views
What is REL_PATHWAY from KEGGREST
keggrest
KEGG
pathway
R
7 months ago by
SupBioInformatics
▴ 30
1
vote
1
reply
613
views
How to get KEGG pathway set with its corresponding metabolite ID/names?
metabolomics
pathway
KEGG
signature
GSEA
8 months ago by
SupBioInformatics
▴ 30
2
votes
3
replies
253
views
Calculating pathway activity from TCGA RPPA data
R
TCGA
RPPA
Pathway
updated 8 months ago by
Kevin Blighe
72k • written 8 months ago by
DBScan
▴ 20
0
votes
0
replies
183
views
Drawing metabolic pathways automatically
kegg
genome
pathway
8 months ago by
zion22
▴ 60
0
votes
5
replies
281
views
pathway or network from DEG list tool (plant)
DEG
network
pathway
updated 8 months ago by
Leite
★ 1.1k • written 8 months ago by
manekineko
▴ 140
0
votes
1
reply
1.1k
views
Mapping drug targets to KEGG pathways
KEGG
Pathway
Drug Target
updated 8 months ago by
Biostar
20 • written 4.6 years ago by
ayanava18
▴ 40
3
votes
3
replies
1.4k
views
What's the relationship between Drugbank drugs and SMPDB pathways?
Drugbank
SMPDB
drug
disease
pathway
updated 9 months ago by
farhantanvir114436
• 0 • written 5.7 years ago by
hohokyo
▴ 30
3
votes
3
replies
616
views
GENE ONTOLOGY VS PATHWAY ANALYSIS...
pathway
gene otology
analysis
9 months ago by
revenge.com
• 0
0
votes
1
reply
152
views
Genes involved in Cereblon pathway
rna-seq
pathway
9 months ago by
Martina
▴ 30
0
votes
0
replies
323
views
Mageck pathway command output error
gsea
mageck
pathway
updated 9 months ago by
Biostar
20 • written 11 months ago by
Swimming bird
▴ 20
1
vote
2
replies
466
views
pathway analysis vs gene enrichment analysis....
enrichment
analysis
pathway
9 months ago by
revenge.com
• 0
0
votes
0
replies
208
views
Schematic overview of metabolic pathways for genomic data
assembly
genome
pathway
KEGG
prokaryote
10 months ago by
ugurcabuk
▴ 160
0
votes
4
replies
234
views
How can I donwload a KEGG pathwat
xml
Gpml
mapp
pathway
KEGG
10 months ago by
zion22
▴ 60
0
votes
0
replies
185
views
Connecting LncRNAs and Pathways
lncRNA
pathway
disease
network analysis
10 months ago by
Manu Madhavan
▴ 20
1
vote
2
replies
198
views
alternative Pathway analysis
pathway
list of genes
11 months ago by
kanwarjag
★ 1.1k
0
votes
0
replies
172
views
two questions about drugbank and proposing an update on a pathway
drugbank
kegg
pathway
updated 11 months ago by
Ram
32k • written 11 months ago by
demoraesdiogo2017
▴ 40
0
votes
2
replies
260
views
pathway genes for mouse
pathway
updated 12 months ago by
Jean-Karim Heriche
24k • written 12 months ago by
rob.costa1234
▴ 280
5
votes
2
replies
254
views
Pathway vs Network
Pathway
Networks
RNA-Seq
updated 12 months ago by
i.sudbery
11k • written 12 months ago by
ATCG
▴ 300
4
votes
4
replies
547
views
GSEA analysis RNA-seq data
RNA-Seq
gsea
pathway
gene ontology
updated 12 months ago by
GenoMax
99k • written 12 months ago by
Marco
▴ 20
0
votes
1
reply
234
views
Pathway targeted genes
Pathway
updated 12 months ago by
gayachit
▴ 200 • written 12 months ago by
rob.costa1234
▴ 280
3
votes
4
replies
322
views
GSEA analaysis understaning
pathway
12 months ago by
kanwarjag
★ 1.1k
0
votes
3
replies
470
views
pathway enriched significant
pathway
updated 12 months ago by
dsull
★ 1.8k • written 12 months ago by
rob.costa1234
▴ 280
1
vote
1
reply
984
views
Shortest path algorithm in pathway studio
pathway
shortest path
algorithm
updated 13 months ago by
Biostar
20 • written 3.7 years ago by
seta
★ 1.5k
3
votes
2
replies
386
views
How are GO biological processes and pathways related?
pathway
GO
geneontology
updated 14 months ago by
i.sudbery
11k • written 14 months ago by
D3xt3r
• 0
1
vote
1
reply
180
views
How to find genes and function of particular species such as Lactobacillus Crispatus?
KEEG
Pathway
functions
bacteria
gene
updated 14 months ago by
GenoMax
99k • written 14 months ago by
eli_bayat
▴ 50
10
votes
4
replies
1.4k
views
Which chromosome a gene belongs to, in human?
genome
metabolism
pathway
entrez
R
updated 14 months ago by
Biostar
20 • written 5.8 years ago by
Marouen Ben Guebila
• 0
0
votes
0
replies
343
views
Pathway analyses with a transcriptome, which tool shall I use?
ReactomePA
pathway
Enrichment Analysis
RNA-Seq
15 months ago by
luzglongoria
▴ 40
0
votes
1
reply
499
views
Reactome Pathway Analysis Identifiers not found
Pathway
gene
proteins
analysis
enrichment
updated 15 months ago by
levshagam
• 0 • written 23 months ago by
bachs
• 0
2
votes
1
reply
320
views
how can i find correlation between two pathway?
pathway
updated 16 months ago by
Kevin Blighe
72k • written 16 months ago by
ali.kian.saei
▴ 10
1
vote
4
replies
299
views
Well studied gene networks/pathways in rice
pathway
rice
16 months ago by
zhang.jianhai
▴ 20
327 results • Page
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Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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Take a look at [dittoSeq](http://www.bioconductor.org/packages/release/bioc/vignettes/dittoSeq/inst/doc/dittoSeq.html) for viz options - it…
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Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
Quanyou
• 0
This seems OK when one gene generates only one transcirpt. But when one gene has multiple transcripts, these code would return a table wher…
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
by
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This seems feasible. But I want to convert tens of thousands of transcript IDs. Could you tell me how can I make it through sequene search?
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The images seem to be missing from your post
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