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Comment: Complex Heatmap/InteractiveComplexHeatmap Error fontawesome 5.13.0
by
stefan.roeder
•
0
Additional information: the app itself is working when executed from local drive.
Error occurs only after installing it from github.
Comment: Is it normal to obtain just a blue line in the "Per base sequence quality module
by
dariober
12k
I think there is something odd. The blue line should be the mean quality and so it should be contained in the box & whiskers which are not …
Comment: AssemblyHaplotypesMultiThreadPlugin fails
by
lcj34
▴
80
Kathryn - When you say "failing" - does the job quit or does it hang? Again, the log file may help.
Answer: Haploview and plink
by
Kevin Blighe
77k
HaploView is intended for specific genomic intervals where you want to define tagging SNPs, compute linkage disequilibrium, etc. It will no…
Answer: Differential expression analysis on normalized RNAseq dataset
by
ATpoint
54k
This thread summarizes what you can do from normalized counts:
https://support.bioconductor.org/p/125144/#125156
Please also use google a…
Comment: NGS raw data manipulation using Linux/Unix
by
5heikki
9.9k
I mostly deal with Ion Torrent reads. Are there any programs that would stop working properly if Illumina read headers were modified by the…
Comment: Loading PLINK files to Haploview
by
Nai
•
0
Haploview is showing 0% loading by inputting the file "plink --file <input_prefix> --recode HV --snps-only just-acgt --out <output_prefix>"…
Comment: How do I get FASTA if i have a protein ID (in 10000's) ?
by
GenoMax
106k
Please post actual code not screenshots of code. You will also want to describe what the code does and how to use it.
Use the `101010` bu…
Answer: How do I get FASTA if i have a protein ID (in 10000's) ?
by
devhimd
•
0
![enter image description here][1]
[1]: /media/images/18b36c0c-fdd6-4266-8869-7beaf049
Comment: TPM value from DESE2 and significant filterig isssue
by
Nai
•
0
Hopefully by these commands, i will get desired output. Then update you.
Comment: Issues installing vep
by
Juke34
★
6.3k
Why are you installing dependencies manually? Did you try `conda install -c bioconda ensembl-vep ` ? It should install all dependencies for…
Comment: Complex Heatmap/InteractiveComplexHeatmap Error fontawesome 5.13.0
by
stefan.roeder
•
0
Have exactly the same issue here.
- Session info -----------------------------------------------------------------------------------------…
Comment: NGS raw data manipulation using Linux/Unix
by
GenoMax
106k
I meant to say [Illumina sequence identifier][1] format. Amended above.
[1]: https://en.wikipedia.org/wiki/FASTQ_format#Illumina_sequen…
Comment: TPM value from DESE2 and significant filterig isssue
by
ATpoint
54k
DESeq2 has many functions to create normalized counts, please see the manual.
#/ normalized counts:
counts(dds, normalized=TRUE)
…
Answer: AssemblyHaplotypesMultiThreadPlugin fails
by
lcj34
▴
80
Kathryn - can you post the log file that was run? Or send to me directly? (lcj34@cornell.edu)
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