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Showing top results for tag: programming • reset
2
votes
0
replies
99
views
News: Unix / scripting / research computing resource
scripting parallel hpc unix programming
4 weeks ago by bacon4000 ▴ 60
2
votes
5
replies
205
views
Ballgown Package of R for the Differential Expressed Genes (DEGs)
programming
updated 8 weeks ago by 52k • written 8 weeks ago by • 0
3
votes
22
replies
657
views
R Programming for Differential Gene Expression Analysis
Ballgown RNA-SEQ Programming R DEG
8 weeks ago by HaroonPakistan • 0
0
votes
2
replies
280
views
Forum: How to write a function (Python 3.8) to find FASTA entry for DNA sequence
coding programming genetics python DNA
updated 12 weeks ago by ★ 11k • written 3 months ago by • 0
24
votes
14
replies
4.3k
views
6 follow
How To Generate Dna K-Mers Of A Given Length In C?
c programming
updated 3 months ago by 34k • written 9.4 years ago by ▴ 50
1
vote
2
replies
290
views
How to get Python code to run correctly for hetero-dimerization analysis
python sequence programming FASTA
updated 3 months ago by 16k • written 3 months ago by ▴ 50
13
votes
10
replies
792
views
6 follow
How to reverse the order of **records** in a fasta file
sequence pipeline programming fasta
updated 3 months ago by 16k • written 3 months ago by ▴ 50
1
vote
2
replies
351
views
Some questions about the CPTAC data processing
programming genomics protein
3 months ago by tujuchuanli ▴ 100
2
votes
2
replies
273
views
How to split the .bigWig file into equal size of bin?
programming mapping alignment
updated 4 months ago by 33k • written 4 months ago by • 0
0
votes
0
replies
188
views
News: 3-day ONLINE TRAINING - NEXTFLOW
pipeline programming workflow cloud clustering
updated 4 months ago by 104k • written 4 months ago by ★ 2.0k
0
votes
2
replies
369
views
GAPIT error : invalid '(to - from)/by'
GWAS R programming
3 months ago by Inquisitive8995 ▴ 210
0
votes
0
replies
137
views
Stringtie output shows no expression for reference genes
stringtie programming annotation transcriptome rna
4 months ago by samhairle • 0
0
votes
1
reply
196
views
Fit a sphere to n 3D points in R
programming python offtopic
updated 4 months ago by 49k • written 4 months ago by ▴ 100
2
votes
5
replies
555
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 4 months ago by ★ 2.6k • written 4 months ago by ▴ 60
0
votes
0
replies
133
views
Error in cut edge program in MATLAB
function programming
4 months ago by Abhinav • 0
0
votes
4
replies
487
views
Computing Hamming similarity (opposite of distance) between string P and each position in string T
alignment scoring programming
4 months ago by lehuyduc3 • 0
2
votes
2
replies
245
views
Installing SRA Tool Kits
general programming
4 months ago by hoffmavl1 ▴ 10
3
votes
3
replies
405
views
Installing SRAToolKit
programming general
updated 4 months ago by ▴ 340 • written 4 months ago by ▴ 10
0
votes
1
reply
212
views
Altering bioawk script to take list.txt file as a command line parameter
programming
updated 4 months ago by ★ 12k • written 4 months ago by ▴ 20
0
votes
0
replies
247
views
Job: Computational Biology Program Developer
programming
4 months ago by BerkeleyLab ▴ 30
0
votes
2
replies
323
views
What is the best tools for circRNA analysis (extraction and quantification) ?
programming rna workflow
4 months ago by chloelaloe • 0
0
votes
0
replies
136
views
Taxonomic Bar Plots for too many values
programming G taxonomy P gene
4 months ago by saraswati.awasthi22 • 0
0
votes
6
replies
520
views
How do I filter interactions that are more than 100kb and less than 3kb
bed rna genome programming genomics
4 months ago by koushikayaluri ▴ 40
12
votes
1
reply
849
views
Forum: Best programming language for bioinformatics - R Language
programming R Forum
3 months ago by Louise ▴ 130
40
votes
24
replies
968
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
R Python Programming Scripting Forum
updated 5 months ago by 9.8k • written 5 months ago by ▴ 30
4
votes
11
replies
341
views
How to write it in R language?
R function programming coding
updated 5 months ago by ▴ 80 • written 5 months ago by ▴ 70
1
vote
0
replies
236
views
News: Online training: Advanced Programming in R
R Programming News
6 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
360
views
Job: 2 postdoc positions (2-years each) in bioinformatics are available in Lund, Sweden
genomics paleogenomics programming Job
7 months ago by eranelhaik ▴ 10
4
votes
6
replies
287
views
where to practise bash
bash programming learning
updated 8 months ago by 12k • written 8 months ago by ▴ 80
2
votes
4
replies
307
views
Computational Biology Programming Course/Book
Programming Course Code scRNA-seq
updated 9 months ago by ★ 11k • written 9 months ago by ▴ 140
5
votes
23
replies
1.5k
views
Please help with connecting the part of the header in a fasta file with another text file
fasta file header txt file programming
updated 10 months ago by 20 • written 5.1 years ago by ★ 1.5k
0
votes
0
replies
245
views
News: Online Training - Introduction to Python
Programming Python News
10 months ago by carlopecoraro2 ★ 2.0k
0
votes
2
replies
431
views
News: Training - Introduction to Deep Learning
DeepLearning Python MachineLearning Programming News
10 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
190
views
Determining Data Distribution
statistics programming
10 months ago by Scott McKay ▴ 30
1
vote
1
reply
368
views
Blog: How should I start learning Python?
python programming Blog
updated 11 months ago by 34k • written 11 months ago by ▴ 10
4
votes
5
replies
385
views
How to set sleep in GNU parallel in a esearch/efetch script
sra ncbi programming shell
updated 11 months ago by ★ 4.0k • written 11 months ago by ★ 1.8k
0
votes
0
replies
627
views
Tornado.util.TimeoutError timed out after 20 s
python RNA-Seq programming software error
updated 12 months ago by 104k • written 12 months ago by ▴ 30
0
votes
0
replies
330
views
News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Programming Biomedical Bioinformatics News
14 months ago by AABI ▴ 120
0
votes
0
replies
563
views
Job: HIRING: Junior Software Engineer, UCSC Genomics Institute
software engineer genomics programming Job
15 months ago by genomicshr ▴ 30
1
vote
1
reply
886
views
Job: Position in Microbial Bioinformatics for COVID-19 Research and Response
genomics rna ngs programming Job
16 months ago by Paul Gordon ▴ 10
1
vote
4
replies
437
views
regex for select dna sequence
python regex dna fasta programming
updated 16 months ago by 88k • written 16 months ago by ▴ 10
0
votes
0
replies
353
views
News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Researchers Programming Biomedical Training Linux News
16 months ago by AABI ▴ 120
0
votes
0
replies
280
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Researchers Programming Biomedical NCBI Resources News
17 months ago by AABI ▴ 120
0
votes
0
replies
331
views
News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Programming Biomedical Bioinformatics News
17 months ago by AABI ▴ 120
0
votes
0
replies
852
views
Job: Postdoc - Bioinformatics/Computational biology at The University of Alabama at Birmingham
postdoc omics programming data scientist genomics Job
21 months ago by cgds ▴ 10
15
votes
11
replies
3.9k
views
Programming Challenge: Divide The Human Genome Among X Cores, Taking Into Account Gaps
programming
updated 21 months ago by 20 • written 8.0 years ago by 20k
0
votes
0
replies
491
views
News: Programming with Bash and Python
Programming Python Unix Bash News
22 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
477
views
News: Do you want to improve your programming skills?
Unix Bash Python Programming News
2.0 years ago by carlopecoraro2 ★ 2.0k
62
votes
17
replies
4.7k
views
14 follow
C And Fortran Programming Language
programming
updated 2.1 years ago by ▴ 140 • written 9.5 years ago by ▴ 50
0
votes
0
replies
663
views
News: Training - Advanced R programming - Berlin
Programming R News
2.2 years ago by carlopecoraro2 ★ 2.0k
50 results • Page 1 of 1
Recent Votes
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
Answer: Which method is the best for using in "dba.count" in Diffbind R package
Answer: Which method is the best for using in "dba.count" in Diffbind R package
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Recent Replies
Comment: use a list of id to extract sequence from different genomics by LZH289 • 0
thank you!
Comment: What does betaPrior do in DESEQ? by i.sudbery 12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values" by Yiming • 0
Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics by GenoMax 104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…
Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0
The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`? …
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by Woa ★ 2.8k
haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
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