Limit : all time
all time today this week this month this year
273 results • Page 1 of 6
Sort: Rank
Rank Views Votes Replies
Filtering for tag: proteomics • reset
0
votes
0
replies
112
views
Job: Staff Data Scientist / Bioinformatician in Proteomics at Max Perutz Labs Vienna
proteomics massspectrometry
16 days ago by Markus • 0
1
vote
5
replies
187
views
Replicates do not cluster together
r proteomics
updated 20 days ago by 72k • written 23 days ago by ▴ 40
3
votes
7
replies
265
views
Differential protein/biomarker expression using limma: is that possible?
RNA-Seq NPX LIMMA PROTEOMICS microarray
19 days ago by Ridha ▴ 20
0
votes
0
replies
85
views
Proximity Extension Assay (PEA) technology
proteomics NPX
27 days ago by priyayadavaiims • 0
0
votes
0
replies
95
views
How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication
5 weeks ago by Farah ▴ 70
2
votes
2
replies
299
views
How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics STRING interaction network uniprot
updated 5 weeks ago by ▴ 20 • written 5 weeks ago by ▴ 70
0
votes
0
replies
233
views
What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome proteomics filtering cut-off score
9 weeks ago by Farah ▴ 70
0
votes
0
replies
116
views
What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics Mass spectrometry spectra MS spectra
10 weeks ago by Farah ▴ 70
0
votes
0
replies
102
views
Calculating emPAI using protein pilot data
proteomics protein pilot emPAI
10 weeks ago by ihedy.m • 0
0
votes
0
replies
276
views
Job: Postdoc Position in DNA/RNA Epigenetics at the Institute of Molecular Biology in Mainz, Germany
RNA-Seq ChIP-Seq next-gen proteomics Job
11 weeks ago by IMB postdoc programme ▴ 30
0
votes
0
replies
417
views
Job: 6 Postdoc Positions in Molecular Biology, Chemistry, Biochemistry & related fields in Mainz, Germany
RNA-Seq ChIP-Seq next-gen proteomics Job
11 weeks ago by IMB postdoc programme ▴ 30
0
votes
1
reply
377
views
How can a single peptide produce redundant fragments during mass spec proteomics?
proteomics mass spectrometry
11 weeks ago by N15 ▴ 120
0
votes
0
replies
244
views
Job: Postdoc Position in Telomere Biology
RNA-Seq ChIP-Seq next-gen proteomics Job
3 months ago by IMB postdoc programme ▴ 30
0
votes
1
reply
476
views
What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape proteomics interaction networks ClueGO
updated 3 months ago by ▴ 440 • written 3 months ago by ▴ 70
0
votes
0
replies
169
views
How to calculate protein abundance from an .mzTab file?
proteomics
3 months ago by psyc_biostars • 0
0
votes
0
replies
254
views
Job: PhD scholarship in Yeast Metabolic Engineering
RNA-Seq DNAseq proteomics -omics Job
4 months ago by info ▴ 60
0
votes
1
reply
180
views
Proteomic Data Analysis
Proteomics
updated 4 months ago by 24k • written 4 months ago by • 0
2
votes
1
reply
193
views
Proteomics bioinformatics pipelines / workflows
proteomics workflows pipelines
4 months ago by Sergio Martínez Cuesta ▴ 170
0
votes
0
replies
353
views
News: Online training - Proteomics in R and Bioconductor
Proteomics R Bioconductor News
5 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
161
views
Which package I can use in SILAC data?
R proteomics silac
updated 5 months ago by 10k • written 5 months ago by ▴ 210
7
votes
8
replies
255
views
FDR for multiple contrasts
fdr p.adjust proteomics
updated 5 months ago by 12k • written 5 months ago by ★ 2.5k
0
votes
0
replies
169
views
Testing for Synergy of enriched Gene Sets
r gene Geneset GSEA Proteomics
6 months ago by nn • 0
1
vote
3
replies
366
views
Heatmap for protein abundance.
heatmap; proteomics
6 months ago by Vivian Den • 0
0
votes
3
replies
443
views
Downloading Proteomic Data (FTP Files)
proteomics sequence
6 months ago by biohacker_tobe ▴ 40
0
votes
0
replies
143
views
get LFQ data from DEP object
R Proteomics MaxQuant DEP
6 months ago by yhara123 • 0
0
votes
1
reply
245
views
Methodology: Meta-analysis and integration of published transcriptomics and proteomics data
RNA-Seq proteomics omics
7 months ago by Cookie-san ▴ 110
0
votes
1
reply
244
views
Analysis of proteomic data using QuantifyR
QuantifyR r proteomics Progenesis
updated 7 months ago by • 0 • written 7 months ago by ★ 1.1k
2
votes
0
replies
374
views
Job: SWEDEN: Post-doctoral Bioinformatician for single cell transcriptomic analysis of stem cells
RNA-Seq Stem Cells Engineered Organs Proteomics Job
7 months ago by paul.bourgine.fr ▴ 20
0
votes
2
replies
208
views
mass spectrometry proteomics psms
MSGFPlus proteomics mass spectrometry
8 months ago by mdfardin374 ▴ 10
2
votes
4
replies
271
views
Check programmaticaly if a protein is mitochondrial with annotations
proteomics GO terms Annotations
updated 8 months ago by ★ 10k • written 8 months ago by ▴ 80
0
votes
0
replies
385
views
Job: Bioinformatics Engineer position at Stanford University
proteomics metabolomics multiomics Job
8 months ago by biodavidjm • 0
0
votes
1
reply
202
views
What technique does proteomic software use to predict if separate sequences originate from the same protein?
proteomics peptides unique
9 months ago by Trombone Engineer • 0
0
votes
1
reply
411
views
Design matrix for ANOVA using limma
R limma statistics proteomics
9 months ago by gustavofw • 0
2
votes
0
replies
253
views
Job: C++ Open Source developer
Machine Learning C++ Proteomics Mass Spectrometry Job
9 months ago by lukas.kall ▴ 40
2
votes
1
reply
535
views
The number of biological replicates and technical replicates in proteomics experiments
proteomics replicates
updated 10 months ago by 12k • written 10 months ago by ▴ 250
0
votes
1
reply
498
views
At which point should I do a log2 transformation of my iTRAQ LCMS data?
proteomics log transformation
updated 11 months ago by ★ 1.9k • written 11 months ago by • 0
0
votes
2
replies
187
views
Need help to generate custom MS database using CustomProDB?
R proteomics
11 months ago by nattzy94 ▴ 20
0
votes
1
reply
221
views
Mass Spec: How to get unmatched MS spectra?
proteomics mass spec
11 months ago by nattzy94 ▴ 20
4
votes
7
replies
1.2k
views
Selecting the background for GO enrichment analysis (proteomics)
GO enrichment proteomics clusterProfiler
updated 11 months ago by • 0 • written 23 months ago by ▴ 200
0
votes
1
reply
324
views
(Cytoscape) How to load and analyse metabolomics data and how to load and analyse metabolomics data in combination with proteomics data
metabolomics proteomics cytoscape
12 months ago by lonnekenouwen • 0
7
votes
3
replies
549
views
What is the minimal recommended cutoff for fold change for such variable samples?
Proteomics Cutoff
updated 13 months ago by 11k • written 13 months ago by ▴ 70
0
votes
1
reply
236
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment persus
13 months ago by harelarik ▴ 70
4
votes
3
replies
1.5k
views
What are the most important conferences in Proteomics?
proteomics
updated 13 months ago by ★ 1.5k • written 5.6 years ago by ▴ 30
0
votes
0
replies
391
views
Job: PhD position in Edinburg University & Karolinska Institute - Taming the Hippo in Cancer through Proteogenomics-
proteomics genomics transcriptomics phd position Job
13 months ago by arta ▴ 620
7
votes
7
replies
461
views
Converting peak ID to gene symbol
Proteomics ID conversion
14 months ago by A ★ 3.9k
1
vote
1
reply
245
views
how to get RNA-binding proteins in mouse
RNA-Seq ChIP-Seq CLIP-seq proteomics
14 months ago by ta_awwad ▴ 310
1
vote
2
replies
1.2k
views
Design matrix for voom: with or without batch blocking?
r voom limma proteomics
updated 14 months ago by ★ 2.5k • written 2.2 years ago by ▴ 200
0
votes
2
replies
223
views
How to detect novel proteins and non-annotated proteins from a list of MS proteins?
mass spectrometry proteomics novel proteins
14 months ago by Farah ▴ 70
0
votes
2
replies
510
views
Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
updated 15 months ago by ▴ 20 • written 15 months ago by • 0
0
votes
0
replies
397
views
News: Course - Proteomics Using R/Bioconductor in Berlin
Proteomics Bioconductor R News
15 months ago by carlopecoraro2 ★ 2.0k
273 results • Page 1 of 6
Recent Votes
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
A: What the index means in illumina RNA-seq data file?
C: What is difference between bulk RNAseq and mRNAseq?
Answer: Taxonomy assignment of viral RNA
Answer: RNAseq data analysis of pooled data
Comment: RNAseq data analysis of pooled data
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Recent Locations • All
Paris, just now
UCLA, 1 minute ago
Germany, 2 minutes ago
Germany, 3 minutes ago
Tehran, 4 minutes ago
India, 4 minutes ago
United Kingdom, 6 minutes ago
Recent Awards • All
Teacher to andrew.j.skelton73 6.2k
Teacher to Jean-Karim Heriche 24k
Popular Question to biobiu ▴ 120
Scholar to Devon Ryan 98k
Supporter to David_emir ▴ 390
Good Answer to Philipp Bayer 6.9k
Voter to Thomas ▴ 100
Recent Replies
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Istvan Albert 87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA by biobiu ▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position by cpad0112 15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Anand Rao ▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position by Dunois ▴ 600
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms by Rogerio Ribeiro ▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA by Zhilong Jia ★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position by hugo.avila ▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On by ponganta ▴ 150
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On by ponganta ▴ 150
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data by ponganta ▴ 150
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data by Dunois ▴ 600
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data by grant.hovhannisyan ★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
Comment: RNAseq data analysis of pooled data by luffy • 0
@dunois Thank you for the tutorial, what are your thoughts for approach for pooled data? should i follow the documentation/the tutorial or …
Comment: How to extract only the specific fasta sequences by matching the ID's to a diff by pinn ▴ 90
In my case, it doesn't work. parallel --verbose 'echo "TRINITY_{}" > test__.txt | seqtk subseq /home/sunn/data/softwares/evaluation/Tr…
Traffic: 1504 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6