Limit : all time
all time today this week this month this year
50 results • Page 1 of 1
Sort: Rank
Rank Views Votes Replies
Showing top results for tag: proteomics • reset
1
vote
1
reply
53
views
  How to perform differential expression on proteomics data?
proteomics TMT Differential Expression R
updated 3 hours ago by 50k • written 3 hours ago by ▴ 40
0
votes
0
replies
39
views
  How to analyse RNA-based protein pulldown mass spectrometry data
proteomics R maxquant limma
19 hours ago by barrypraveen ▴ 30
0
votes
0
replies
67
views
  LOESS Normalization Explanation
proteomics pre-processing InfernoRDN normalization
4 days ago by aye • 0
2
votes
1
reply
97
views
  How to perform PPI network analysis in STRING for newly sequenced bacterial genome ?
Proteomics cytoscape network STRING
updated 2 days ago by 34k • written 8 days ago by ▴ 50
0
votes
0
replies
103
views
Job:  Senior Bioinformatician (Proteomics, Immunocore, UK)
proteomics UK immunocore
updated 20 hours ago by 34k • written 21 days ago by • 0
0
votes
2
replies
169
views
  VennDiagram for differentially expressed proteins
proteomics VennDiagram
5 weeks ago by yannick.venturaavila • 0
0
votes
0
replies
70
views
  Tool/server for metal ion amino acid binding site prediction ?
proteomics database python genomics
updated 19 hours ago by 34k • written 5 weeks ago by ▴ 50
0
votes
1
reply
134
views
  Compare protein functionality between species
Genetics Comparative Proteomics
updated 5 weeks ago by ★ 11k • written 5 weeks ago by • 0
0
votes
0
replies
73
views
Tool:  Omics Playground Cloud Version
RNA-seq Transcriptomics scRNA-seq Proteomics
6 weeks ago by Axel Martinelli • 0
0
votes
1
reply
127
views
  How to calculate median peptide intensity of each protein in mass-spec dataset in R
bioconductor r transcriptomics proteomics
updated 6 weeks ago by 50k • written 6 weeks ago by • 0
0
votes
0
replies
93
views
  Need help in understanding MaxQuant output files
Proteomics
7 weeks ago by rishav513 • 0
0
votes
0
replies
148
views
Job:  Exciting Bioinformatics Engineer position at Stanford University
Jobs proteomics multiomics metabolomics
7 weeks ago by biodavidjm • 0
2
votes
2
replies
149
views
  Need help in doing proteomics analysis
proteomics
updated 7 weeks ago by 16k • written 7 weeks ago by • 0
0
votes
0
replies
220
views
Job:  Bioinformatician at Turbine / Hungary
proteomics cancerreserach singlecell python r
9 weeks ago by timea.volenter • 0
1
vote
0
replies
89
views
  Holistic enzyme activity determination with computation
proteomics protein enzymes
updated 1 day ago by 34k • written 10 weeks ago by ▴ 10
0
votes
0
replies
202
views
Job:  Staff Data Scientist / Bioinformatician in Proteomics at Max Perutz Labs Vienna
proteomics massspectrometry
3 months ago by Markus • 0
1
vote
5
replies
288
views
  Replicates do not cluster together
r proteomics
updated 3 months ago by 74k • written 3 months ago by ▴ 40
4
votes
8
replies
582
views
  Differential protein/biomarker expression using limma: is that possible?
RNA-Seq NPX LIMMA PROTEOMICS microarray
updated 18 days ago by ▴ 10 • written 3 months ago by ▴ 40
0
votes
0
replies
121
views
  Proximity Extension Assay (PEA) technology
proteomics NPX
3 months ago by priyayadavaiims • 0
0
votes
0
replies
131
views
  How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication
3 months ago by Farah ▴ 70
2
votes
2
replies
376
views
  How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics STRING interaction network uniprot
updated 3 months ago by ▴ 20 • written 3 months ago by ▴ 70
0
votes
0
replies
292
views
  What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome proteomics filtering cut-off score
4 months ago by Farah ▴ 70
0
votes
0
replies
144
views
  What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics Mass spectrometry spectra MS spectra
4 months ago by Farah ▴ 70
0
votes
0
replies
136
views
  Calculating emPAI using protein pilot data
proteomics protein pilot emPAI
4 months ago by ihedy.m • 0
0
votes
0
replies
329
views
Job:  Postdoc Position in DNA/RNA Epigenetics at the Institute of Molecular Biology in Mainz, Germany
RNA-Seq ChIP-Seq next-gen proteomics Job
5 months ago by IMB postdoc programme ▴ 30
0
votes
0
replies
461
views
Job:  6 Postdoc Positions in Molecular Biology, Chemistry, Biochemistry & related fields in Mainz, Germany
RNA-Seq ChIP-Seq next-gen proteomics Job
5 months ago by IMB postdoc programme ▴ 30
0
votes
1
reply
462
views
  How can a single peptide produce redundant fragments during mass spec proteomics?
proteomics mass spectrometry
5 months ago by N15 ▴ 130
0
votes
0
replies
306
views
Job:  Postdoc Position in Telomere Biology
RNA-Seq ChIP-Seq next-gen proteomics Job
5 months ago by IMB postdoc programme ▴ 30
0
votes
1
reply
532
views
  What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape proteomics interaction networks ClueGO
updated 6 months ago by ▴ 450 • written 6 months ago by ▴ 70
0
votes
0
replies
211
views
  How to calculate protein abundance from an .mzTab file?
proteomics
6 months ago by psyc_biostars • 0
0
votes
0
replies
297
views
Job:  PhD scholarship in Yeast Metabolic Engineering
RNA-Seq DNAseq proteomics -omics Job
6 months ago by info ▴ 60
0
votes
1
reply
218
views
  Proteomic Data Analysis
Proteomics
updated 7 months ago by 24k • written 7 months ago by • 0
2
votes
1
reply
243
views
  Proteomics bioinformatics pipelines / workflows
proteomics workflows pipelines
7 months ago by Sergio Martínez Cuesta ▴ 180
0
votes
0
replies
551
views
News:  Online training - Proteomics in R and Bioconductor
Proteomics R Bioconductor News
7 months ago by carlopecoraro2 ★ 2.0k
0
votes
0
replies
211
views
  Which package I can use in SILAC data?
R proteomics silac
updated 7 months ago by 10k • written 7 months ago by ▴ 210
7
votes
8
replies
338
views
  FDR for multiple contrasts
fdr p.adjust proteomics
updated 7 months ago by 12k • written 7 months ago by ★ 2.5k
0
votes
0
replies
199
views
  Testing for Synergy of enriched Gene Sets
r gene Geneset GSEA Proteomics
9 months ago by nn • 0
1
vote
3
replies
500
views
  Heatmap for protein abundance.
heatmap; proteomics
9 months ago by Vivian Den • 0
0
votes
3
replies
622
views
  Downloading Proteomic Data (FTP Files)
proteomics sequence
9 months ago by biohacker_tobe ▴ 40
0
votes
0
replies
185
views
  get LFQ data from DEP object
R Proteomics MaxQuant DEP
9 months ago by yhara123 • 0
0
votes
1
reply
303
views
  Methodology: Meta-analysis and integration of published transcriptomics and proteomics data
RNA-Seq proteomics omics
10 months ago by Cookie-san ▴ 110
0
votes
1
reply
282
views
  Analysis of proteomic data using QuantifyR
QuantifyR r proteomics Progenesis
updated 10 months ago by • 0 • written 10 months ago by ★ 1.1k
2
votes
0
replies
425
views
Job:  SWEDEN: Post-doctoral Bioinformatician for single cell transcriptomic analysis of stem cells
RNA-Seq Stem Cells Engineered Organs Proteomics Job
10 months ago by paul.bourgine.fr ▴ 20
0
votes
2
replies
246
views
  mass spectrometry proteomics psms
MSGFPlus proteomics mass spectrometry
10 months ago by mdfardin374 ▴ 10
2
votes
4
replies
332
views
  Check programmaticaly if a protein is mitochondrial with annotations
proteomics GO terms Annotations
updated 10 months ago by ★ 11k • written 10 months ago by ▴ 80
0
votes
1
reply
245
views
  What technique does proteomic software use to predict if separate sequences originate from the same protein?
proteomics peptides unique
12 months ago by Trombone Engineer • 0
0
votes
1
reply
504
views
  Design matrix for ANOVA using limma
R limma statistics proteomics
12 months ago by gustavofw • 0
2
votes
0
replies
299
views
Job:  C++ Open Source developer
Machine Learning C++ Proteomics Mass Spectrometry Job
12 months ago by lukas.kall ▴ 40
2
votes
1
reply
653
views
  The number of biological replicates and technical replicates in proteomics experiments
proteomics replicates
updated 13 months ago by 12k • written 13 months ago by ▴ 250
0
votes
1
reply
647
views
  At which point should I do a log2 transformation of my iTRAQ LCMS data?
proteomics log transformation
updated 13 months ago by ★ 1.9k • written 13 months ago by • 0
50 results • Page 1 of 1
Recent Votes
Comment: MERLIN: skipped due to megabytes problem
Comment: MERLIN: skipped due to megabytes problem
Duplicate genotypes after phasing in Beagle
Answer: Beagle: Skip intervals with no common markers
A: How Do You Manage Your Files & Directories For Your Projects ?
A: How Do You Manage Your Files & Directories For Your Projects ?
Snakemake error: "Removing output files of failed job since they might be corrupted:"
Recent Locations • All
Bologna, just now
Universe, 1 minute ago
Poznań, 1 minute ago
Singapore, 2 minutes ago
Israel, 2 minutes ago
WCIP | Glasgow | UK, 2 minutes ago
Tehran, 2 minutes ago
Recent Awards • All
Popular Question to Assa Yeroslaviz ★ 1.6k
Popular Question to lenC_biotecLover ▴ 40
Popular Question to A ★ 3.9k
Teacher to dariober 12k
Popular Question to banerjeeshayantan ▴ 200
Popular Question to choijamtsm ▴ 50
Scholar to Kirill Tsyganov ▴ 310
Recent Replies
Comment: How to remove repeated sequence region in Interproscan .gff3 with many ORFs? by Juke34 ★ 5.8k
If your file does contains only `ORF` and `nucleic_acid` and they are independant, the way to go is to put them in the ` features_level1.j…
Comment: Beagle: Skip intervals with no common markers by Jack ▴ 10
sorry I forgot to clarify, in the example `beagle` is an alias for `java -Xmx50g -jar beagle.25Nov19.28d.jar`
Comment: Biopython's Esearch for Pubmed does not give the same results as web search by GenoMax 103k
To follow up on this - Entrezdirect seems to be doing an "All Fields" search by default. $ esearch -db pubmed -query "sclerosis" <…
Comment: Local realignment around indels by Pierre Lindenbaum 136k
when publishing it's (sadly?) better to say you used the "GATK best practices" to call your variants...
Comment: MERLIN: skipped due to megabytes problem by 349151519 • 0
Thank you so much for replying. I reduced my pedigree size and it worked. : )
Comment: MERLIN: skipped due to megabytes problem by 349151519 • 0
Thank you so much for replying. I reduced my pedigree size and it worked. : )
Comment: IPA - gene list by GenoMax 103k
That information is generally shown in tables etc. Number of genes from your list that are present in the pathway.
Comment: How to create a proper design matrix/contrast matrix for methylation 850k analys by i.sudbery 12k
This is a not an answer to the above question, please open a new question.
Comment: IPA - gene list by shreya.kouda • 0
Is there a way to export just the genes from our dataset? I do not want all the genes from the pathway, rather just the genes that are part…
Answer: Different ab initio 3D structure prediction for same protein sequence by trRoset by jgreener ▴ 330
Have a read of the trRosetta paper and the section "Structure Determination by Energy Minimization with Predicted Restraints" will give you…
Comment: Local realignment around indels by Elisa • 0
I was calling the variants with bcftools. Do you suggest me to use GATK4 instead? (I have a targeted sequencing problem with tumor samples)
Answer: Biopython's Esearch for Pubmed does not give the same results as web search by lbehringer • 0
I can think of two factors that might cause different results between Biopython and the web search: 1. Depending on how specific the query…
Answer: Local realignment around indels by Pierre Lindenbaum 136k
> I should perform local realignment only after PCR duplicates removal? if you're calling the variant with GATK4, you don't need to rea…
Comment: How to calculate the difference between the RNA-Seq individual samples? by mohammedtoufiq91 ▴ 110
@seidel, thank you very much.
Comment: How to create a proper design matrix/contrast matrix for methylation 850k analys by almsu798 • 0
Hi, what if you have 20 patients and for each patient you have two sources of tissues (Primary and metastatic). I have tried the below but …
Traffic: 2402 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6