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273 results • Page
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Filtering for tag:
proteomics
•
reset
0
votes
0
replies
112
views
Job:
Staff Data Scientist / Bioinformatician in Proteomics at Max Perutz Labs Vienna
proteomics
massspectrometry
16 days ago by
Markus
• 0
1
vote
5
replies
187
views
Replicates do not cluster together
r
proteomics
updated 20 days ago by
Kevin Blighe
72k • written 23 days ago by
rin
▴ 40
3
votes
7
replies
265
views
Differential protein/biomarker expression using limma: is that possible?
RNA-Seq
NPX
LIMMA
PROTEOMICS
microarray
19 days ago by
Ridha
▴ 20
0
votes
0
replies
85
views
Proximity Extension Assay (PEA) technology
proteomics
NPX
27 days ago by
priyayadavaiims
• 0
0
votes
0
replies
95
views
How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics
mass spectrometry
protein
replication
5 weeks ago by
Farah
▴ 70
2
votes
2
replies
299
views
How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics
STRING
interaction network
uniprot
updated 5 weeks ago by
damian.szk
▴ 20 • written 5 weeks ago by
Farah
▴ 70
0
votes
0
replies
233
views
What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome
proteomics
filtering
cut-off score
9 weeks ago by
Farah
▴ 70
0
votes
0
replies
116
views
What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics
Mass spectrometry
spectra
MS spectra
10 weeks ago by
Farah
▴ 70
0
votes
0
replies
102
views
Calculating emPAI using protein pilot data
proteomics
protein pilot
emPAI
10 weeks ago by
ihedy.m
• 0
0
votes
0
replies
276
views
Job:
Postdoc Position in DNA/RNA Epigenetics at the Institute of Molecular Biology in Mainz, Germany
RNA-Seq
ChIP-Seq
next-gen
proteomics
Job
11 weeks ago by
IMB postdoc programme
▴ 30
0
votes
0
replies
417
views
Job:
6 Postdoc Positions in Molecular Biology, Chemistry, Biochemistry & related fields in Mainz, Germany
RNA-Seq
ChIP-Seq
next-gen
proteomics
Job
11 weeks ago by
IMB postdoc programme
▴ 30
0
votes
1
reply
377
views
How can a single peptide produce redundant fragments during mass spec proteomics?
proteomics
mass spectrometry
11 weeks ago by
N15
▴ 120
0
votes
0
replies
244
views
Job:
Postdoc Position in Telomere Biology
RNA-Seq
ChIP-Seq
next-gen
proteomics
Job
3 months ago by
IMB postdoc programme
▴ 30
0
votes
1
reply
476
views
What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape
proteomics
interaction networks
ClueGO
updated 3 months ago by
scooter
▴ 440 • written 3 months ago by
Farah
▴ 70
0
votes
0
replies
169
views
How to calculate protein abundance from an .mzTab file?
proteomics
3 months ago by
psyc_biostars
• 0
0
votes
0
replies
254
views
Job:
PhD scholarship in Yeast Metabolic Engineering
RNA-Seq
DNAseq
proteomics
-omics
Job
4 months ago by
info
▴ 60
0
votes
1
reply
180
views
Proteomic Data Analysis
Proteomics
updated 4 months ago by
Jean-Karim Heriche
24k • written 4 months ago by
jahanshanzida
• 0
2
votes
1
reply
193
views
Proteomics bioinformatics pipelines / workflows
proteomics
workflows
pipelines
4 months ago by
Sergio Martínez Cuesta
▴ 170
0
votes
0
replies
353
views
News:
Online training - Proteomics in R and Bioconductor
Proteomics
R
Bioconductor
News
5 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
161
views
Which package I can use in SILAC data?
R
proteomics
silac
updated 5 months ago by
zx8754
10k • written 5 months ago by
yueli7
▴ 210
7
votes
8
replies
255
views
FDR for multiple contrasts
fdr
p.adjust
proteomics
updated 5 months ago by
dariober
12k • written 5 months ago by
A. Domingues
★ 2.5k
0
votes
0
replies
169
views
Testing for Synergy of enriched Gene Sets
r
gene
Geneset
GSEA
Proteomics
6 months ago by
nn
• 0
1
vote
3
replies
366
views
Heatmap for protein abundance.
heatmap;
proteomics
6 months ago by
Vivian Den
• 0
0
votes
3
replies
443
views
Downloading Proteomic Data (FTP Files)
proteomics
sequence
6 months ago by
biohacker_tobe
▴ 40
0
votes
0
replies
143
views
get LFQ data from DEP object
R
Proteomics
MaxQuant
DEP
6 months ago by
yhara123
• 0
0
votes
1
reply
245
views
Methodology: Meta-analysis and integration of published transcriptomics and proteomics data
RNA-Seq
proteomics
omics
7 months ago by
Cookie-san
▴ 110
0
votes
1
reply
244
views
Analysis of proteomic data using QuantifyR
QuantifyR
r
proteomics
Progenesis
updated 7 months ago by
Shisheng
• 0 • written 7 months ago by
Leite
★ 1.1k
2
votes
0
replies
374
views
Job:
SWEDEN: Post-doctoral Bioinformatician for single cell transcriptomic analysis of stem cells
RNA-Seq
Stem Cells
Engineered Organs
Proteomics
Job
7 months ago by
paul.bourgine.fr
▴ 20
0
votes
2
replies
208
views
mass spectrometry proteomics psms
MSGFPlus
proteomics
mass spectrometry
8 months ago by
mdfardin374
▴ 10
2
votes
4
replies
271
views
Check programmaticaly if a protein is mitochondrial with annotations
proteomics
GO terms
Annotations
updated 8 months ago by
Mensur Dlakic
★ 10k • written 8 months ago by
lumal29
▴ 80
0
votes
0
replies
385
views
Job:
Bioinformatics Engineer position at Stanford University
proteomics
metabolomics
multiomics
Job
8 months ago by
biodavidjm
• 0
0
votes
1
reply
202
views
What technique does proteomic software use to predict if separate sequences originate from the same protein?
proteomics
peptides
unique
9 months ago by
Trombone Engineer
• 0
0
votes
1
reply
411
views
Design matrix for ANOVA using limma
R
limma
statistics
proteomics
9 months ago by
gustavofw
• 0
2
votes
0
replies
253
views
Job:
C++ Open Source developer
Machine Learning
C++
Proteomics
Mass Spectrometry
Job
9 months ago by
lukas.kall
▴ 40
2
votes
1
reply
535
views
The number of biological replicates and technical replicates in proteomics experiments
proteomics
replicates
updated 10 months ago by
JC
12k • written 10 months ago by
wangdp123
▴ 250
0
votes
1
reply
498
views
At which point should I do a log2 transformation of my iTRAQ LCMS data?
proteomics
log transformation
updated 11 months ago by
Ahill
★ 1.9k • written 11 months ago by
jolienhendrix
• 0
0
votes
2
replies
187
views
Need help to generate custom MS database using CustomProDB?
R
proteomics
11 months ago by
nattzy94
▴ 20
0
votes
1
reply
221
views
Mass Spec: How to get unmatched MS spectra?
proteomics
mass spec
11 months ago by
nattzy94
▴ 20
4
votes
7
replies
1.2k
views
Selecting the background for GO enrichment analysis (proteomics)
GO
enrichment
proteomics
clusterProfiler
updated 11 months ago by
janetscully
• 0 • written 23 months ago by
Sebastian Hesse
▴ 200
0
votes
1
reply
324
views
(Cytoscape) How to load and analyse metabolomics data and how to load and analyse metabolomics data in combination with proteomics data
metabolomics
proteomics
cytoscape
12 months ago by
lonnekenouwen
• 0
7
votes
3
replies
549
views
What is the minimal recommended cutoff for fold change for such variable samples?
Proteomics
Cutoff
updated 13 months ago by
i.sudbery
11k • written 13 months ago by
harelarik
▴ 70
0
votes
1
reply
236
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics
enrichment
persus
13 months ago by
harelarik
▴ 70
4
votes
3
replies
1.5k
views
What are the most important conferences in Proteomics?
proteomics
updated 13 months ago by
Assa Yeroslaviz
★ 1.5k • written 5.6 years ago by
tevlon84
▴ 30
0
votes
0
replies
391
views
Job:
PhD position in Edinburg University & Karolinska Institute - Taming the Hippo in Cancer through Proteogenomics-
proteomics
genomics
transcriptomics
phd
position
Job
13 months ago by
arta
▴ 620
7
votes
7
replies
461
views
Converting peak ID to gene symbol
Proteomics
ID conversion
14 months ago by
A
★ 3.9k
1
vote
1
reply
245
views
how to get RNA-binding proteins in mouse
RNA-Seq
ChIP-Seq
CLIP-seq
proteomics
14 months ago by
ta_awwad
▴ 310
1
vote
2
replies
1.2k
views
Design matrix for voom: with or without batch blocking?
r
voom
limma
proteomics
updated 14 months ago by
Gordon Smyth
★ 2.5k • written 2.2 years ago by
Sebastian Hesse
▴ 200
0
votes
2
replies
223
views
How to detect novel proteins and non-annotated proteins from a list of MS proteins?
mass spectrometry
proteomics
novel proteins
14 months ago by
Farah
▴ 70
0
votes
2
replies
510
views
Job:
Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq
DNA-seq
ATAC-seq
proteomics
microbiome
Job
updated 15 months ago by
fu_entomology
▴ 20 • written 15 months ago by
lhuang7
• 0
0
votes
0
replies
397
views
News:
Course - Proteomics Using R/Bioconductor in Berlin
Proteomics
Bioconductor
R
News
15 months ago by
carlopecoraro2
★ 2.0k
273 results • Page
1 of 6
Recent Votes
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
A: What the index means in illumina RNA-seq data file?
C: What is difference between bulk RNAseq and mRNAseq?
Answer: Taxonomy assignment of viral RNA
Answer: RNAseq data analysis of pooled data
Comment: RNAseq data analysis of pooled data
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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24k
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Recent Replies
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Istvan Albert
87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA
by
biobiu
▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position
by
cpad0112
15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Anand Rao
▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position
by
Dunois
▴ 600
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms
by
Rogerio Ribeiro
▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA
by
Zhilong Jia
★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position
by
hugo.avila
▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On
by
ponganta
▴ 150
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On
by
ponganta
▴ 150
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data
by
ponganta
▴ 150
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data
by
Dunois
▴ 600
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data
by
grant.hovhannisyan
★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
Comment: RNAseq data analysis of pooled data
by
luffy
• 0
@dunois Thank you for the tutorial, what are your thoughts for approach for pooled data? should i follow the documentation/the tutorial or …
Comment: How to extract only the specific fasta sequences by matching the ID's to a diff
by
pinn
▴ 90
In my case, it doesn't work. parallel --verbose 'echo "TRINITY_{}" > test__.txt | seqtk subseq /home/sunn/data/softwares/evaluation/Tr…
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