Limit : all time
all time today this week this month this year
50 results • Page 1 of 1
Sort: Rank
Rank Views Votes Replies
Showing top results for tag: reference • reset
4
votes
4
replies
159
views
Where to get consensus sequences of human transposable elements
database transposons reference
updated 6 days ago by 5.2k • written 7 days ago by 45k
0
votes
0
replies
57
views
how to build a graph reference with HISAT-genotype
reference RNA-seq hisat2 alignment
10 days ago by minghuiguo448 • 0
3
votes
2
replies
181
views
GRCm39 (mm39) vs GRCm38(mm10)
genome reference mouse DNA dna
updated 17 days ago by 99k • written 17 days ago by ▴ 10
0
votes
1
reply
132
views
What should be the value of Sjdboverhang in STAR?
STAR index reference sjdbOverhang
27 days ago by dare_devil ★ 1.4k
1
vote
5
replies
132
views
Human WGS :which genome reference
genome alignment reference
updated 8 weeks ago by 48k • written 8 weeks ago by • 0
0
votes
7
replies
170
views
subread keeps makes a weird .sam file, have i done something wrong?
subread rsubread alignment DNA reference
8 weeks ago by amy_houseman ▴ 20
10
votes
11
replies
15k
views
6 follow
How to determine reference genome that was used for alignment given BAM with obscure or no header
BAM Reference alignment Reference Genome
updated 10 weeks ago by ▴ 290 • written 5.8 years ago by ▴ 260
2
votes
4
replies
187
views
Sanger sequencing chromatogram aligned to reference gene
sanger sequencing chromatogram reference alignment
updated 3 months ago by ★ 1.6k • written 3 months ago by • 0
0
votes
3
replies
205
views
NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
MAF genome reference GRCm38 NCBI build
3 months ago by whb ▴ 20
1
vote
2
replies
155
views
How to create alternate reference for SNPs?
snps reference
5 months ago by Parham ★ 1.5k
2
votes
0
replies
334
views
Reference Consortium (HRC) in GRch38/hg38
haplotype reference genome
5 months ago by noshadho ▴ 20
1
vote
2
replies
265
views
Different reference human genome
bwa human reference
5 months ago by v.shapovalova1 ▴ 10
2
votes
4
replies
197
views
Changing the reference allele
population genomics reference ancestral allele
7 months ago by evoecogen • 0
7
votes
6
replies
3.2k
views
Problems For Mapping Contigs Onto Reference
blat reference genome
updated 7 months ago by 20 • written 10.0 years ago by ▴ 390
2
votes
1
reply
470
views
mouse chrY centromere location
genome reference
9 months ago by igor 12k
8
votes
14
replies
3.9k
views
List Of Dbsnp Variants Where Reference Genome Has Minor Allele
reference dbsnp variant exome
updated 12 months ago by 20 • written 9.4 years ago by ▴ 30
0
votes
7
replies
429
views
Reference sequence to be used for assembly in nanopore
reference Assembly
15 months ago by SUDOsundu ▴ 20
0
votes
1
reply
296
views
Problems with Reference alleles at VCF files
SNP vcf reference
17 months ago by epifaniarango • 0
2
votes
6
replies
650
views
Failure in extracting reads from bam file due to unknown reference
alignment bam extraction reference
17 months ago by marongiu.luigi ▴ 560
0
votes
0
replies
297
views
Merged Reference Panel using WES data
sequencing imputation reference
17 months ago by shamav523 • 0
3
votes
4
replies
445
views
E coli Illumina paired assembly using a reference genome?
genome sequencing Assembly reference
20 months ago by lg248 • 0
0
votes
0
replies
309
views
reference peptide database (post-translational products)
peptides proteins reference database
20 months ago by gtrwst9 • 0
4
votes
3
replies
3.0k
views
Illumina Pe Reads Mapping To Reference Genome
illumina bowtie2 reference metagenomics
updated 21 months ago by 20 • written 8.1 years ago by • 0
0
votes
0
replies
650
views
Beagle phasing without map and reference parameters
beagle map reference
22 months ago by Shicheng Guo ★ 8.6k
0
votes
0
replies
448
views
How can I get the ID reference genes in GEO ?
ID reference GEO gene ID
2.0 years ago by Lila M ▴ 910
16
votes
7
replies
452
views
Why does UCSC produce reference genomes when GRC already does it well?
assembly reference
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 170
50
votes
12
replies
22k
views
7 follow
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
updated 2.1 years ago by ▴ 20 • written 3.0 years ago by ▴ 300
0
votes
1
reply
358
views
high frequency protein truncating variants in hg19
reference genome annotation
updated 2.1 years ago by 45k • written 2.1 years ago by • 0
0
votes
0
replies
342
views
Are there any other reference alingnment bases than Balibase?
Balibase alignment reference databases
2.1 years ago by MichaelTrev ▴ 10
8
votes
9
replies
2.5k
views
7 follow
Assembling PacBio reads using a reference genome
PacBio Assembly Resequencing Reference
updated 2.2 years ago by ▴ 10 • written 3.8 years ago by ▴ 50
2
votes
2
replies
1.2k
views
Where can I find the reference files for the 1000 Genome project VCF data?
VCF 1000 Genome Reference
updated 2.3 years ago by 14k • written 2.3 years ago by ★ 1.4k
2
votes
5
replies
642
views
Finding and changing a given position in hg19 ref fasta file
hg19 fasta reference
2.3 years ago by cetin.m ▴ 50
3
votes
5
replies
1.3k
views
Link for pre-indexed BWA indices for human reference
bwa index human reference genome
2.4 years ago by lakhujanivijay 5.4k
0
votes
1
reply
1.2k
views
mapping rate of small rna-seq with different references
smRNA-seq mapping rate reference
updated 2.4 years ago by 32k • written 3.1 years ago by ▴ 20
1
vote
3
replies
1.4k
views
Reference based assembly
Reference Assembly
updated 2.4 years ago by ★ 1.6k • written 2.5 years ago by ▴ 30
4
votes
2
replies
1.3k
views
Current version of human reference Genome Assembly
genome reference Assembly
updated 2.5 years ago by ★ 2.5k • written 2.5 years ago by ▴ 70
1
vote
5
replies
1.5k
views
How to use samtools tview goto with long reference sequence name
samtools tview reference goto
updated 2.5 years ago by 2.3k • written 2.5 years ago by ▴ 10
0
votes
2
replies
624
views
Fetched gene from gff file shows similarity to other organism
gff reference
2.5 years ago by shubhra.bhattacharya ▴ 120
10
votes
15
replies
2.8k
views
convert fasta/gb to vcf
vcf reference file conversion
2.5 years ago by marongiu.luigi ▴ 560
10
votes
6
replies
4.4k
views
GRCh37.p13 download at NCBI FTP?
ncbi reference grch37
updated 2.6 years ago by 72k • written 2.6 years ago by ▴ 190
8
votes
4
replies
2.1k
views
How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?
zebrafish daniorerio genome reference fasta
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 20
10
votes
6
replies
820
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
paper reference Forum
written 2.7 years ago by ▴ 140
12
votes
7
replies
661
views
why do bed files not contain information about the reference?
bed hg19 hg38 reference
updated 2.7 years ago by 6.9k • written 2.7 years ago by ▴ 190
1
vote
5
replies
729
views
Where I can download a reference genome of a pine tree transcriptome?
plant transcriptome conifer reference
updated 2.7 years ago by 99k • written 2.7 years ago by • 0
0
votes
3
replies
643
views
Ambiguous position in SNPdb file and reference genome
SNP reference ngs
updated 2.7 years ago by 135k • written 2.7 years ago by ▴ 90
0
votes
4
replies
751
views
Can't find chr1 in a large fasta file using samtools/htsjdk
Assembly fasta reference samtools
updated 2.8 years ago by ★ 1.7k • written 2.8 years ago by • 0
2
votes
1
reply
547
views
How does variant callers deal with N in the reference sequence?
genome reference N variant call
updated 2.8 years ago by 12k • written 2.8 years ago by ▴ 40
4
votes
5
replies
1.2k
views
Help with rat RNA-Seq data with the HISAT-StringTie workflow
RNA-Seq HISAT Rat Reference
2.9 years ago by JackieMe ▴ 30
0
votes
1
reply
2.3k
views
CNV calling using ExomeDepth
CNV ExomeDepth reference
updated 2.9 years ago by 6.2k • written 2.9 years ago by ▴ 900
4
votes
9
replies
1.6k
views
6 follow
Recreate reference fasta from bam file
bam fasta reference
updated 2.9 years ago by 32k • written 2.9 years ago by 21k
50 results • Page 1 of 1
Recent Votes
Comment: Genotype Data in PLINK
Comment: Hunting invisible characters?
Comment: Hunting invisible characters?
Comment: A simple tutorial for a complex ComplexHeatmap
Comment: A simple tutorial for a complex ComplexHeatmap
Comment: A simple tutorial for a complex ComplexHeatmap
Answer: Hunting invisible characters?
Recent Locations • All
Texas, just now
Australia, 1 minute ago
United States, 2 minutes ago
United States, Buffalo, 3 minutes ago
India, 5 minutes ago
London, 6 minutes ago
United States, 6 minutes ago
Recent Awards • All
Popular Question to TriS ★ 4.3k
Scholar to Philipp Bayer 6.9k
Teacher to igor 12k
Scholar to Sam ★ 3.5k
Teacher to Alex Reynolds 32k
Scholar to ivivek_ngs ★ 5.1k
Popular Question to Chaimaa ▴ 250
Recent Replies
Comment: How can I Extract Transposable element from a new genome assembly? by Philipp Bayer 6.9k
if you can transform the bed to gff (galaxy has tools for that), you could also use liftoff which wraps all of this in a pipeline https://g…
Comment: A simple tutorial for a complex ComplexHeatmap by Rob ▴ 40
Great! Thank you ATpoint
Comment: Hunting invisible characters? by seidel 7.6k
Another way to see hidden characters is to pipe them through octal dump: `cat infile | od -c` this will print out hidden characters, newlin…
Comment: How can I Extract Transposable element from a new genome assembly? by GenoMax 99k
Align your assemblies to each other using an aligner like `lastz` ([**LINK**][1]). You could also use `blat` if you are sure the assemblies…
Comment: Trimmomatic-0.36 not finding adapter directory by GenoMax 99k
It is going to take as long as it takes. You need to be patient and wait until the prompt returns. Based on speed of your CPU/disk things c…
Comment: Hunting invisible characters? by GenoMax 99k
You could have looked at the file using `cat -vet` which would have shown all characters in the file. Printable and non.
Comment: Can't count features with featurecount by avelarbio46 ▴ 10
I'm not sure about three things: What does -M and -O do exactly that could benefit in my case? Why should I specify -t if I don't necessa…
Comment: Hunting invisible characters? by geneticatt ▴ 120
Thank you, using `dos2unix` worked perfectly!
Answer: Hunting invisible characters? by Mensur Dlakic ★ 10k
You may want to read [**this**][1]. I think you may be able to fix your adaper file by typing: dos2unix i5R.txt If an error pops …
Comment: RNA seq analysis; two samples by Ram 32k
Please do not delete posts that have comments/answers.
Comment: ICE normalization using JuicerTools by sckinta ▴ 610
Is there a way to extract ICE bias from balanced .cool file? I know that you can find weight associated with each bin by `cooler dump --bal…
Comment: How to verify putative miRNA by boczniak767 ▴ 740
Yeah, miRNA could be only verified in wet-lab. Take a look at [stem-loop PCR][1]. I've used it and it works really well. [1]: https://j…
Comment: R - A bioinformatic analysis programming language for NGS by Ram 32k
Because this is a plain copy-paste from the novogene page, it has numbers (pointers to specific references that the source has), but not th…
Comment: X amino acid in ensembl by Mensur Dlakic ★ 10k
This is correct. `X` means any amino acid. Most substitution matrices apply identical penalty (`-1`) when any amino-acid is aligned with X …
Answer: differential expression analysis by Mensur Dlakic ★ 10k
I think the numbers you cite are the most extreme values that people will still accept. In most cases I would go for lower p-values (at lea…
Traffic: 1824 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6