1
vote
4
replies
277
views
0
votes
2
replies
235
views
0
votes
7
replies
617
views
updated 5 months ago by
i.sudbery
13k
•
written 5 months ago by
firatuyulur
▴
310
2
votes
2
replies
234
views
1
vote
1
reply
295
views
3
votes
5
replies
568
views
2
votes
2
replies
745
views
4
votes
10
replies
1.2k
views
0
votes
0
replies
1.1k
views
0
votes
1
reply
1.6k
views
updated 3.5 years ago by
Kevin Blighe
77k
•
written 3.5 years ago by
Ginevra
•
0
0
votes
1
reply
844
views
3.7 years ago by
TWV
▴
90
2
votes
2
replies
1.7k
views
0
votes
0
replies
1.7k
views
6
votes
4
replies
6.0k
views
5
votes
14
replies
1.5k
views
4
votes
4
replies
2.8k
views
updated 5.5 years ago by
GouthamAtla
11k
•
written 5.5 years ago by
Rajesh Detroja
▴
160
4
votes
2
replies
1.8k
views
updated 5.6 years ago by
Pierre Lindenbaum
138k
•
written 5.6 years ago by
natasha
▴
100
1
vote
4
replies
2.2k
views
updated 6.2 years ago by
Pierre Lindenbaum
138k
•
written 6.2 years ago by
salamandra
▴
410
3
votes
3
replies
1.8k
views
4
votes
4
replies
4.5k
views
7.0 years ago by
axelwilhelm
▴
110
2
votes
1
reply
2.2k
views
updated 7.4 years ago by
Sukhi Singh
10k
•
written 7.4 years ago by
K.Nijbroek
▴
100
6
votes
2
replies
3.1k
views
Recent Votes
Recent Locations •
All
Bologna, just now
United States, just now
United States, 1 minute ago
United States, 1 minute ago
St Louis, 1 minute ago
Ecuador, 3 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 3 minutes ago
Recent Awards •
All
Popular Question to
leeb4
•
0
Popular Question to
stcatpang
▴
60
Commentator to
Istvan Albert
89k
Popular Question to
utkarsh.sood
▴
40
Scholar to
rpolicastro
5.8k
Scholar to
Devon Ryan
100k
Recent Replies
Comment: How To Download .Gbk Files From Ncbi Website
by
GenoMax
106k
> NCBI seems to only be providing me with GenBank flat format files not
> regular gb/gbk
What does that mean? A GenBank format file will c…
Comment: How To Download .Gbk Files From Ncbi Website
by
jmgreenb420
•
0
This is a much older question but I am having the same issue and have followed the posted answers. NCBI seems to only be providing me with …
Comment: Unable to download fastq files in parallel / SOS
by
GenoMax
106k
Looks like you have an extra space in your output dir `/scratch/eag88/rnaseqtrial /rawsamples` in your script. Remove the space after `rnas…
Comment: Unable to download fastq files in parallel / SOS
by
Renesh
★
2.0k
First, try to run the command with any accession such as `fastq-dump --split-files SRR8296149` on compute node. If it works, then you have…
Comment: How to extract protein sequences from published paper
by
GenoMax
106k
`22753475` is the PMID. I added the part starting with `grep` onwards to demonstrate that this works. You will need to take that part out t…
Comment: Unable to download fastq files in parallel / SOS
by
eag
•
0
Thanks for the response! I'm following a course so I just followed what they did. Do you have an idea as to why mine wouldn't work?
I trie…
Comment: Filter criteria for variants based on GBS data
by
Renesh
★
2.0k
Here [in this article][1], I have covered some of the filtering criteria for variant filtering from the GBS data. I hope it will be helpful…
Comment: Unable to download fastq files in parallel / SOS
by
Renesh
★
2.0k
SRA-toolkit supports the multithreading option, but it is for single files and not multiple files. I think you mean here batch download ins…
Comment: How to extract protein sequences from published paper
by
Nelo
•
0
First of of thank you so much for replying again
So the number '22753475' is the PMID I guess but what about the last line 'grep ">" | hea…
Comment: Best Omic file compressor?
by
Mensur Dlakic
★
13k
This is not really answering your question, but it may be useful.
Disk storage is relatively cheap compared to time and effort needed to t…
Comment: How to extract protein sequences from published paper
by
Nelo
•
0
Yes some paper mentioned about the accession number but other paper haven't mentioned accession number of protein other than the number of …
Comment: long non coding RNA
by
Hyper_Odin
▴
200
Indeed!
They don't even mention it in the "About" section of the page.
Instead they mention it [here][1].
[1]: https://bioinformatics.…
Comment: limma+voom flips the sign of the effect from CPM?
by
Jautis
▴
330
That's what I thought as well, but it's happening none the less which is why I'm confused. I don't think this is a consequence of small rea…
Comment: Issues installing Pindel from git
by
GenoMax
106k
Install using `conda`. Instructions for installing `conda` ([LINK][1]).
Then do: https://anaconda.org/bioconda/pindel
[1]: https://bio…
Comment: Issues installing Pindel from git
by
Edmond
•
0
Hello, I am having the same issue after 3.9 years. Can any one help me please ?
Traffic: 2144 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6