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I'd look at the [DESeq2 documentation][1] and maybe [this tutorial][2] as a start. There are couple of nice tutorials on YouTube also.
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Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here?
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it would be great and helpful to others if you share your answer here.
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You need pre-defined variants for Vartrix. Typically it's used in conjuction with WGS/WES from bulk tissue to look for clonal variants in d…
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Oh, I'm sorry. I already posted it in here the https://www.biostars.org/p/457243/#9464486. I've added the images
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The images seem to be missing from your post
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Thank you very much for this. Much appreciated.
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Thanks Man... I've wroten a simple awk command for this task! Everything is working fine.
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Do you have exact command used by the author? I guess that not all details was presented in the paper. You can always ask the corresponding…
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