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79 results • Page
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Filtering for tag:
scRNAseq
•
reset
0
votes
0
replies
30
views
Demultiplexing Samples With Contaminated Hashtag
scRNAseq
seurat
demultiplexing
1 day ago by
fouerghi20
▴ 30
0
votes
2
replies
88
views
integrate two single cell datasets and use transfer learning approach using annotated cell atlas
scRNASeq
machine_learning
4 days ago by
das2000sidd
▴ 30
0
votes
2
replies
113
views
heterogeneity in cluster when using Seurat Doheatmap
scRNAseq
cluster
r
Seurat
seurat
5 days ago by
Jie
• 0
0
votes
0
replies
64
views
Pathway enrichment analysis vs GSEA for single cell RNA sequencing data analysis
GSEA
pathway
scRNAseq
9 days ago by
aa123
• 0
0
votes
1
reply
165
views
Seurat: Any way to identify genes expressed only in one condition of one cluster?
scRNAseq
Seurat
updated 10 days ago by
jared.andrews07
9.2k • written 10 days ago by
zhouyichaosdu
• 0
0
votes
1
reply
75
views
Help me solve this error in bigSCale2
bigSCale2
scRNAseq
updated 28 days ago by
lakhujanivijay
5.4k • written 28 days ago by
dhanesh01998
• 0
4
votes
9
replies
661
views
6 follow
Getting mitochondrial genes for scRNAseq
RNA-Seq
rna-seq
scRNAseq
single-cell
updated 5 weeks ago by
charlesgwellem
• 0 • written 9 months ago by
m-harbus
• 0
0
votes
0
replies
95
views
DEG analysis between control and treatment groups in integrated scRNAseq analysis
scRNAseq
integration
DEG
5 weeks ago by
aa123
• 0
1
vote
1
reply
142
views
zero inflated correlation computation scRNAseq
scRNAseq
correlation
9 weeks ago by
sim.j.baum
▴ 90
1
vote
2
replies
156
views
scRNAseq .h5ad (processed) data sets db?
single cell RNA seq
data base
scRNAseq
snRNAseq
updated 10 weeks ago by
GenoMax
99k • written 10 weeks ago by
sim.j.baum
▴ 90
1
vote
2
replies
295
views
Duplicated row names on Seurat
CCLE
Seurat
scRNAseq
single cell
updated 3 months ago by
Biostar
20 • written 3 months ago by
fouerghi20
▴ 30
0
votes
0
replies
172
views
Performing integration analysis of two datasets of different sizes in Seurat
scrnaseq
seurat
3 months ago by
aa123
• 0
1
vote
3
replies
229
views
Setting up scRNA-seq differential gene expression analaysis
scRNAseq
differential gene expresion
DEGs
RNA-Seq
updated 4 months ago by
Biostar
20 • written 5 months ago by
kalanir
• 0
0
votes
0
replies
2.0k
views
How to use "SingleR" on the marker genes from `FindAllMarkers` for each cluster?
SingleR
seurat
scRNAseq
scRNA
4 months ago by
SupBioInformatics
▴ 30
0
votes
3
replies
239
views
Normalization for subset of data
statistics
scRNAseq
4 months ago by
asumani
▴ 70
1
vote
6
replies
333
views
Single-cell RNA-seq coverage track not corresponding to gene structure
scRNAseq
cellranger
updated 5 months ago by
rpolicastro
5.1k • written 5 months ago by
Eugene A
▴ 100
0
votes
1
reply
276
views
Pooling WT and CRISPR/Cas9 KOs cells in the same scRNAseq sample and then demultiplex by puromycin resistance cassette expression
scRNAseq
RNA-Seq
CRISPR-CAS9
updated 5 months ago by
jockbanan
▴ 390 • written 5 months ago by
Francesco
▴ 10
4
votes
2
replies
992
views
Finding Subclusters in Seurat Clusters
seurat
scRNAseq
cluster
subcluster
updated 5 months ago by
jared.andrews07
9.2k • written 5 months ago by
fouerghi20
▴ 30
1
vote
0
replies
322
views
Job:
Two bioinformatics positions at Boston Children's Hospital
RNA-Seq
next-gen
bioinformatics
scRNAseq
Job
5 months ago by
Liang Sun
▴ 10
0
votes
0
replies
245
views
mitochondria in single nuclear RNAseq
snrnaseq
scrnaseq
seurat
single cell RNAseq
6 months ago by
Rahul Tyagi
• 0
1
vote
3
replies
511
views
iSEE singlecellexperiment GUI app on shinyapps not working, Troubleshooting
iSEE
shiny
scRNAseq
updated 6 months ago by
kevinrue67
▴ 10 • written 6 months ago by
Gabriel
▴ 90
8
votes
11
replies
2.3k
views
How many PCs should be considered for downstream analyses?
scRNAseq
PCA
UMAP
Clustering
RNAseq
updated 6 months ago by
Eugene A
▴ 100 • written 13 months ago by
bioinforesearchquestions
▴ 280
2
votes
3
replies
571
views
Running PHATE on Seurat Object
scRNAseq
seurat
PHATE
updated 6 months ago by
jared.andrews07
9.2k • written 6 months ago by
fouerghi20
▴ 30
0
votes
8
replies
962
views
SCTransform prior or after merging samples into one object?
Seurat
scRNAseq
merging samples
6 months ago by
annadv
• 0
2
votes
11
replies
289
views
scRNAseq - DE
scRNAseq
RNA-Seq
DE
8 months ago by
garciajessica0311
▴ 10
0
votes
0
replies
217
views
TF regulatory network reconstruction from single cell
scRNAseq
Seurat
updated 8 months ago by
GouthamAtla
11k • written 8 months ago by
V
▴ 250
0
votes
3
replies
459
views
scRNAseq: working with barcode, gene and matrix files
scRNAseq
updated 8 months ago by
bioinformatics2020
▴ 570 • written 8 months ago by
colonppg
▴ 110
4
votes
4
replies
1.4k
views
Converting scRNA-Seq to Bulk-RNASeq
scRNASeq
bulk-RNASeq
RNA-Seq
single-cell
9 months ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
306
views
Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq
scRNAseq
10x
cellranger
9 months ago by
biostarukha
▴ 10
2
votes
0
replies
424
views
Tool:
CIPR - Cluster Identity Predictor for scRNAseq experiments
RNA-Seq
R
shiny
scRNAseq
Tool
10 months ago by
atakanekiz
▴ 260
9
votes
11
replies
1.1k
views
Using limma for scRNAseq data
scRNAseq
limma
updated 10 months ago by
igor
12k • written 10 months ago by
annadv
• 0
0
votes
1
reply
1.5k
views
Difference between "LogNormalize" normalization method in Seurat and z score normalization
z-score
statistics
normalization
seurat
scRNAseq
updated 11 months ago by
ATpoint
47k • written 11 months ago by
f.morgana
• 0
2
votes
5
replies
243
views
gene expression correlation positive controls scRNAseq
scRNAseq
gene expression correlation
updated 11 months ago by
GouthamAtla
11k • written 11 months ago by
guillaume.rbt
▴ 830
0
votes
2
replies
824
views
Amazon AWS setup for the bioinformatic analysis particularly scRNAseq
AWS
Rstudio
scRNAseq
updated 11 months ago by
Kevin Blighe
72k • written 11 months ago by
akh22
▴ 50
0
votes
0
replies
287
views
Adding certain barcodes to metadata
seurat
scrnaseq
11 months ago by
michelle.piquet
▴ 50
19
votes
18
replies
1.7k
views
about batch correction in scRNA-seq
scRNAseq
scRNA
batch correction
12 months ago by
Bogdan
★ 1.1k
0
votes
3
replies
317
views
ConsensusClusterPlus error "Memory limit reached"
scRNAseq
ConsensusClusterPlus
12 months ago by
joker33
▴ 30
6
votes
8
replies
428
views
using distinct versions of SEURAT on a SLURM cluster
Seurat
scRNAseq
updated 12 months ago by
Giovanni M Dall'Olio
27k • written 14 months ago by
Bogdan
★ 1.1k
1
vote
4
replies
504
views
How to understand the multi-sample processing of Seurat?
RNA-Seq
scRNAseq
seurat
updated 12 months ago by
Friederike
6.9k • written 13 months ago by
xiaoguang
▴ 50
2
votes
0
replies
843
views
Job:
Postdoctoral Scientist Position in Computational Biology at University of Missouri
scRNAseq
job
postdoc
ChIP-Seq
Job
12 months ago by
Obi Griffith
19k
3
votes
5
replies
542
views
Downloading FASTQ files from ArrayExpress very slow
sequencing
scRNAseq
ArrayExpress
FASTQ
12 months ago by
f.morgana
• 0
0
votes
2
replies
800
views
Normalization of index sort data in Seurat
R
scRNAseq
13 months ago by
f.morgana
• 0
5
votes
5
replies
1.1k
views
Downsampling one of the sample on the UMAP clustering to match the number of cells of the other group
scRNAseq
UMAP
downsampling
RNAseq
updated 13 months ago by
jared.andrews07
9.2k • written 13 months ago by
bioinforesearchquestions
▴ 280
12
votes
14
replies
652
views
Identifying tumor cells in single cell RNAseq data
cancer
scRNAseq
R
updated 13 months ago by
jared.andrews07
9.2k • written 14 months ago by
jrleary
▴ 170
3
votes
2
replies
1.3k
views
Any recommendations for copy number variation (CNV) packages for scRNA-seq?
single cell
scRNAseq
CNV
R
updated 14 months ago by
jared.andrews07
9.2k • written 14 months ago by
jrleary
▴ 170
0
votes
1
reply
286
views
Should cells be rows or columns when dimension reducing scRNAseq data?
scRNAseq
single cell
analysis
15 months ago by
jrleary
▴ 170
1
vote
2
replies
1.0k
views
single cell RNA seq gene co-expression
scRNAseq
gene co-expression
15 months ago by
guillaume.rbt
▴ 830
4
votes
4
replies
1.4k
views
How to scale data for scater plotHeatmap function similar to Seurat?
scRNAseq
scater
Seurat
heatmap
updated 15 months ago by
Biostar
20 • written 17 months ago by
TJ
▴ 40
0
votes
0
replies
986
views
How to calculate pseudo time for all cells with monocle3
scRNAseq
monocle3
16 months ago by
xiaoguang
▴ 50
1
vote
1
reply
794
views
Can cell ranger count take a folder of only .fastq.gz as input?
cellranger
scRNAseq
updated 16 months ago by
swbarnes2
9.7k • written 16 months ago by
jrleary
▴ 170
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