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310 results • Page
1 of 7
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Filtering for tag:
transcriptome
•
reset
11
votes
5
replies
265
views
Forum:
Is it still interesting to publish the profile of the transcriptome?
Article
RNA
Transcriptome
Suggestion
RNAseq
3 days ago by
tiagobellintani
▴ 20
2
votes
3
replies
159
views
How are transcriptome annotations published?
RNAseq
annotation
publish
transcriptome
2 days ago by
Dunois
▴ 620
1
vote
5
replies
764
views
Efficient way to perform fastq filtering of contaminants by read name prior to transcriptome assembly?
trinity
BBmap
transcriptome
filtering
assembly
updated 4 days ago by
GenoMax
99k • written 5 days ago by
jfaberha
▴ 10
1
vote
4
replies
212
views
Finding transcriptome coverage of genome
mapping
transcriptome
trinity
RNAseq
updated 6 days ago by
prasundutta87
▴ 470 • written 6 days ago by
DNAlias
▴ 10
2
votes
4
replies
251
views
What are the disadvantages of increasing the sequencing depth of RNA-seq experiment?
NGS
RNA-Seq
sequencing
depth
transcriptome
10 days ago by
mrj
▴ 20
0
votes
0
replies
53
views
Merging Output from Trinity and Go analysis
transcriptome
merge
assembly
11 days ago by
dimitrischat
▴ 140
2
votes
3
replies
176
views
Transcriptome assembly -- fastp vs Trimmomatic
trimming
transcriptome
updated 12 days ago by
Istvan Albert
87k • written 13 days ago by
Michael
▴ 210
2
votes
2
replies
1.2k
views
is quality evaluation of transcriptome assembly still required if my workflow is (good quality reads (fastp) -> bowtie2 alignment to reference genome…
RNA-seq
transcriptome
updated 13 days ago by
GenoMax
99k • written 13 days ago by
mrj
▴ 20
0
votes
0
replies
60
views
Stringtie output shows no expression for reference genes
stringtie
programming
annotation
transcriptome
rna
17 days ago by
samhairle
• 0
0
votes
1
reply
128
views
Does transcriptome assembly data contains introns?
Transcriptome
RNA-Seq
Stringtie
Hisat2
Assembly
updated 7 weeks ago by
lieven.sterck
10k • written 7 weeks ago by
noorussubah95
• 0
0
votes
4
replies
137
views
Identify contaminants in my transcriptomic sequences
Assembly
transcriptome
de-novo
updated 7 weeks ago by
GenoMax
99k • written 7 weeks ago by
Rogerio Ribeiro
▴ 50
3
votes
8
replies
155
views
Puzzling NCBI BLAST+ output after transcriptome assembly
blast
ncbi
fasta
transcriptome
trinity
updated 9 weeks ago by
h.mon
32k • written 9 weeks ago by
ella
• 0
1
vote
1
reply
171
views
How correlate between transcriptome data and expression, without proteome data?
ICGC
proteome
integrated analysis
transcriptome
updated 3 months ago by
Carlo Yague
5.8k • written 3 months ago by
abdi.zhr26
• 0
0
votes
7
replies
299
views
GEO Accession transcriptome data comparison with custom gene expression sets
RNA-Seq
R
DESeq2
GEO
Transcriptome
3 months ago by
sujitsilas
• 0
3
votes
3
replies
172
views
Need guidance for RNA_seq analysis of Ecoli with expression vector
RNA-Seq
bacteria
transcriptome
Assembly
alignment
3 months ago by
mss
▴ 40
0
votes
3
replies
290
views
Having made a paired-end and stranded-forward sequencing (NGS) implies that I will only get positive reading frames?
assembly
RNA-Seq
transcriptome
Illumina
5 months ago by
sofiablancoglez
• 0
0
votes
0
replies
244
views
Normalization for RNA-Seq samples
RNA-Seq
Tissue specific
Transcriptome
5 months ago by
ATCG
▴ 300
0
votes
0
replies
188
views
PacBio long-reads impact in transcriptome de novo assembly
RNA-Seq
Assembly
Transcriptome
de novo
long-reads
5 months ago by
Manuel Mendoza
▴ 10
0
votes
1
reply
1.7k
views
error will using transdecoder.predict
transcriptome
transdecoder
updated 6 months ago by
Biostar
20 • written 4.3 years ago by
najibveto
▴ 40
1
vote
1
reply
242
views
CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to build?)
Transcriptome
CAST
mouse
salmon
updated 6 months ago by
mark.ziemann
★ 1.3k • written 6 months ago by
Rhodnius
• 0
0
votes
0
replies
197
views
Is there any RNA-seq summary study for one certain"family" species?
transcriptome
RNA-Seq
specie
6 months ago by
wensulin93
• 0
2
votes
4
replies
713
views
What is "Possible polymerase run-on fragment"?
transcriptome
updated 7 months ago by
Ram
32k • written 2.8 years ago by
I0110
▴ 120
4
votes
3
replies
235
views
multi species_gene name to description
gene
function
transcriptome
updated 7 months ago by
GenoMax
99k • written 7 months ago by
Aremkh
▴ 20
0
votes
2
replies
742
views
Subset Function in Ballgown
transcriptome
differential expression
updated 9 months ago by
zhhxu9
▴ 10 • written 17 months ago by
mss
▴ 40
2
votes
4
replies
230
views
Find transcripts of one species in RNA-assembly
RNA-Seq
blast
transcriptome
metagenome
9 months ago by
Tom
▴ 530
0
votes
1
reply
179
views
Same transceiptome data with or without replicates
RNA-Seq
transcriptome
10 months ago by
rprog008
▴ 70
2
votes
2
replies
224
views
what should I do first: transciptome annotation or DE analysis?
rna-seq
assembly
transcriptome
annotation
updated 10 months ago by
kristoffer.vittingseerup
★ 3.5k • written 10 months ago by
vinicius
▴ 10
1
vote
2
replies
215
views
Where to find reference transcriptome for firefly?
scRNA-seq
cellranger
alignment
transcriptome
updated 11 months ago by
GenoMax
99k • written 11 months ago by
jrleary
▴ 170
1
vote
3
replies
208
views
Conservation of co-expressed genes across transcriptomes
RNA-Seq
sequence
transcriptome
evolution
11 months ago by
khhgng
▴ 70
0
votes
1
reply
1.7k
views
evigene pipeline failure: missing cdna_bestorf.pl
RNA-Seq
transcriptome
evigene
updated 12 months ago by
tomeksilentfall
• 0 • written 4.4 years ago by
lplough
▴ 30
4
votes
5
replies
271
views
RNASeq data analysis without control
RNA-Seq
deg
transcriptome
12 months ago by
devarora
▴ 420
4
votes
10
replies
2.0k
views
EvidentialGene reduces redundancy of de novo transcriptome assembly?
RNA-Seq
Assembly
transcriptome
redundancy
trinity
updated 13 months ago by
reutnuri
• 0 • written 3.8 years ago by
crimsontabaq
▴ 70
2
votes
3
replies
274
views
RNAseq cell line as a covariate
rnaseq
deseq2
cellline
transcriptome
updated 13 months ago by
Kevin Blighe
72k • written 13 months ago by
gradstudentNew
▴ 40
1
vote
2
replies
309
views
min_contig_length parameter in Trinity - Isoforms discrimination
transcriptome
assembly
trinity
13 months ago by
Light92
▴ 50
3
votes
7
replies
474
views
Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic
trinity
Assembly
transcriptome
13 months ago by
Light92
▴ 50
5
votes
8
replies
413
views
How to perform transcriptomic clustering to find bad samples?
RNA-Seq
transcriptome
14 months ago by
c_u
▴ 290
1
vote
4
replies
368
views
Trimming of fasta file headers
fasta
RNA-Seq
RNA
transcriptome
updated 14 months ago by
tshtatland
▴ 80 • written 14 months ago by
2822462298
▴ 60
3
votes
6
replies
413
views
How to identify 3'UTR region?
RNA-Seq
mRNA
transcriptome
genome
updated 14 months ago by
i.sudbery
11k • written 14 months ago by
2822462298
▴ 60
0
votes
0
replies
250
views
GTF to match transcriptome data in TopHat
TopHat
transcriptome
GTF
14 months ago by
blur
▴ 180
0
votes
8
replies
361
views
Best alignment software for mapping short DNA reads to transcriptome?
alignment
Transcriptome
DNA
14 months ago by
Joel Wallenius
▴ 70
0
votes
1
reply
302
views
transcriptome and methylome dataset for various immune cells
immune cell
transcriptome
methylome
dataset
16 months ago by
Jung-ho Kong
• 0
0
votes
2
replies
820
views
tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the que…
blast
transcriptome
software error
alignment
16 months ago by
molly77
▴ 10
0
votes
1
reply
488
views
How to minimize chimeric transcripts assembled with StringTie
stringtie
rna-seq
transcriptome
17 months ago by
alex.zaccaron
▴ 200
4
votes
6
replies
544
views
Maker2 Transcriptome Input
Maker2
Annotation
Trinity
Transcriptome
18 months ago by
Colaptes
▴ 50
3
votes
1
reply
496
views
N 50 Value
transcriptome
Assembly
Trinity
updated 19 months ago by
WouterDeCoster
45k • written 19 months ago by
ravichandiranbt
▴ 10
3
votes
6
replies
1.5k
views
Tools for finding tissue specific gene expression "markers"?
transcriptome
markers
gene expression
updated 20 months ago by
Shamim Sarhadi
▴ 220 • written 3.4 years ago by
arvchi
▴ 50
1
vote
3
replies
431
views
Submitting many transcriptomes to TSA - how to automatize?
TSA
transcriptome
NCBI
database
submition
20 months ago by
al-ash
▴ 150
0
votes
0
replies
713
views
How to compare the alignment to genome and transcriptome
RNA-Seq
alignment
genome
transcriptome
updated 20 months ago by
ATpoint
47k • written 20 months ago by
Xiaokang ZH
▴ 50
2
votes
3
replies
530
views
Detecting GC Bias in Transcriptomes (RNA-seq)
RNA-Seq
transcriptome
20 months ago by
Jon17
▴ 20
2
votes
3
replies
462
views
How do I subset a fasta file to only contain transcripts with NO BLAST hits?
RNA-Seq
transcriptome
annotation
updated 20 months ago by
Biostar
20 • written 22 months ago by
whw84
• 0
310 results • Page
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