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Filtering for tag:
utr
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0
votes
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replies
115
views
Job:
Two postdocs (one wet, one dry) in 3' UTR biology and RNA threapeutics
rna
machine-learning
utr
20 days ago by
i.sudbery
11k
0
votes
2
replies
142
views
Lengths of UTR3, UTR5 and ORF from gtf file
UTR
ORF
19 days ago by
bio_elle
• 0
0
votes
0
replies
94
views
Finding mutational burden in TCGA dataset
genome
python
UTR
tcga
cancer
5 weeks ago by
Jamie Watson
• 0
0
votes
0
replies
182
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR
SNV
RNA-Seq
genome
sequence
5 weeks ago by
Thind amarinder
▴ 130
0
votes
0
replies
115
views
Calling UTRs in TCGA dataset
TCGA
cancer
UTR
ORF
9 weeks ago by
Jamie Watson
• 0
11
votes
7
replies
8.9k
views
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 4 months ago by
Biostar
20 • written 7.7 years ago by
J.F.Jiang
▴ 860
2
votes
6
replies
1.3k
views
Recommended Tools For 3'UTR APA Detection From Rna-Seq Data?
RNA-Seq
R
Polyadenylation
UTR
tools
5 months ago by
gandrescabrera
▴ 80
3
votes
5
replies
250
views
Download entire gene sequences (including UTRs) with BioMart-Ensembl
ensembl
genomes
UTR
6 months ago by
lessismore
★ 1.1k
3
votes
3
replies
396
views
Coordinates for genomic features?
gene
utr
promoter
intron
exon
7 months ago by
Ankit
▴ 170
0
votes
1
reply
1.2k
views
3'UTR Strip from all genes
genome
python
ucsc
utr
mysql
updated 9 months ago by
Biostar
20 • written 3.8 years ago by
josolvason
• 0
2
votes
2
replies
220
views
NA return when searching for 3'UTRs in biomaRt
R
utr
na
biomart
updated 10 months ago by
Ben_Ensembl
★ 1.6k • written 10 months ago by
beccafhhs
▴ 10
0
votes
0
replies
259
views
Extracting 3' UTR from long read RNA sequencing reads
rna-seq
UTR
long-reda
11 months ago by
peris
▴ 120
0
votes
6
replies
208
views
Homology of 3' UTRs
UTR
homology
updated 11 months ago by
ATpoint
47k • written 11 months ago by
i.sudbery
11k
0
votes
4
replies
1.8k
views
Collecting 3' UTR and neighboring exonic sequence from GENCODE GTF files
GENCODE
GTF
UTR
updated 12 months ago by
Biostar
20 • written 5.0 years ago by
mdwain.uw
• 0
3
votes
6
replies
423
views
Downloading 3' UTR sequences for miRNA Target Prediction
utr
RNA-Seq
Assembly
sequence
genome
updated 14 months ago by
i.sudbery
11k • written 14 months ago by
yronimuz
• 0
0
votes
4
replies
664
views
How to extract 3', 5' UTR sequences from genbank records using python, PERL and R code?
UTR
updated 15 months ago by
zubenel
▴ 110 • written 15 months ago by
mathavanbioinfo
▴ 60
0
votes
2
replies
270
views
Is virus specific UTR prediction tool available?
UTR
16 months ago by
mathavanbioinfo
▴ 60
3
votes
3
replies
292
views
GENCODE and untranslated regions
GENCODE
UTR
updated 16 months ago by
Emily_Ensembl
22k • written 16 months ago by
j.lunger18
▴ 10
2
votes
1
reply
675
views
3' UTRs GTF file
gtf
utr
mir
expression
updated 16 months ago by
Asaf
8.6k • written 16 months ago by
Triple Nipple
▴ 10
10
votes
9
replies
443
views
Remove overlap between Exon and UTR boundaries
RNA-Seq
exon
UTR
updated 18 months ago by
JC
12k • written 18 months ago by
waqaskhokhar999
▴ 100
3
votes
1
reply
390
views
Mapping aligned reads to UTRs
alignment
rna-seq
utr
cds
RNA-Seq
updated 22 months ago by
Ace
▴ 80 • written 22 months ago by
jpcchoy
• 0
2
votes
6
replies
431
views
Finding Ribo-seq reads in annotated UTRs
Ribo-Seq
UTR
Alignment
HTSeq
Annotation
22 months ago by
jpcchoy
• 0
2
votes
3
replies
526
views
Bulk Download all CDS and UTRs of known genes from ENSEMBL
UTR
CDS
ensembl
updated 22 months ago by
ATpoint
47k • written 22 months ago by
Aishwarya Kulkarni
▴ 80
1
vote
3
replies
548
views
annotate gene feature
gene
feature
annotation
UTR
24 months ago by
arunprasanna83
▴ 40
1
vote
6
replies
1.1k
views
Find the 3' utrs, 5'utrs and their counts from bam files
bam
bed
ucsc
bedtools
utr
updated 2.2 years ago by
Gautier Richard
▴ 340 • written 2.2 years ago by
ilovesuperheroes1993
▴ 10
7
votes
7
replies
4.9k
views
Multiple Sequence Alignment Of 3' Utr
alignment
multiple
utr
updated 2.6 years ago by
Ram
32k • written 11.0 years ago by
Ria
▴ 20
2
votes
6
replies
1.5k
views
Get one maximum UTR per gene
3' UTR
UTR
UCSC
Biomart
updated 3.7 years ago by
Alex Reynolds
32k • written 3.7 years ago by
max
• 0
0
votes
0
replies
1.1k
views
Bacterial UTR Analysis tools
transcription
UTR
promoter
4.1 years ago by
Joe
19k
0
votes
0
replies
1.8k
views
Training Augustus parameters for CDS and UTRs - separately or together?
genome
gene
augustus
utr
4.1 years ago by
roryC
• 0
0
votes
1
reply
1.1k
views
How to find the longest annotated 3' UTR in human or mouse genomes?
utr
genome
sequence
human
mouse
4.2 years ago by
gprezza
▴ 30
11
votes
3
replies
2.5k
views
Finding UTR regions in the RNA sequencing data from a non-model organism
UTR
RNA-seq
non-model organism
updated 4.5 years ago by
EVR
▴ 570 • written 4.5 years ago by
seta
★ 1.5k
3
votes
6
replies
2.5k
views
infer 3' and 5' UTR from gff3 file
next-gen
genome
utr
gff3
updated 4.7 years ago by
Daniel Standage
4.0k • written 4.7 years ago by
Chris
▴ 30
54
votes
9
replies
21k
views
9 follow
Easy Way To Get 3' Utr Lengths Of A List Of Genes
utr
updated 4.7 years ago by
marcosmorgan
▴ 110 • written 10.2 years ago by
Paul
▴ 760
8
votes
9
replies
7.6k
views
How To Get The 3' Utr Given Geneid And Transcriptid In Ensembl Using Python?
ensembl
utr
biomart
api
updated 5.1 years ago by
alex.rubinsteyn
▴ 130 • written 10.1 years ago by
Sam
▴ 70
1
vote
4
replies
1.7k
views
Is there any way to extract longest ORF from blastx output?
sequence
alignment
blast
CDS
UTR
updated 5.5 years ago by
5heikki
9.6k • written 5.6 years ago by
sohra
▴ 40
3
votes
6
replies
1.9k
views
Finding coding and UTR regions for a gene list
sequencing
alignment
coding
UTR
updated 5.6 years ago by
Pierre Lindenbaum
135k • written 5.6 years ago by
seta
★ 1.5k
0
votes
2
replies
2.4k
views
How to get distingushable CDS and UTR sequences of gene from biomart?
sequence
coding
UTR
biomart
updated 5.6 years ago by
Devon Ryan
98k • written 5.6 years ago by
sohra
▴ 40
0
votes
1
reply
1.6k
views
UTR visualization of CLIP seq data
utr
browser
visulaization
updated 5.8 years ago by
Sukhi Singh
10k • written 5.9 years ago by
kanwarjag
★ 1.1k
0
votes
4
replies
2.2k
views
biomaRt: Extracting data for a particular isoform (R/bioconductor)
biomart
bioconductor
utr
extract
updated 5.8 years ago by
Biostar
20 • written 5.9 years ago by
bsmith030465
▴ 180
0
votes
0
replies
1.2k
views
How to align/cluster/do phylogeny work on (un)spliced transcripts?
phylogeny
alignment
UTR
RNA-Seq
5.9 years ago by
cyril-cros
▴ 910
4
votes
6
replies
2.3k
views
5"UTR and 3"UTR of Nile Tilapia Genome (Oreochromis niloticus)
xenorefseq
ucsc table browser
utr annotations
utr
updated 5.9 years ago by
cyril-cros
▴ 910 • written 5.9 years ago by
wanziyi89
▴ 60
3
votes
2
replies
3.0k
views
retrieve 3prime UTR sequence for refseq genes
UTR
refseq
genes
sequence
6.0 years ago by
nathanielsaxe
▴ 10
0
votes
2
replies
1.9k
views
program to pull out 5'and 3'utr from cds file
cds
utr
program
6.1 years ago by
vigneshprbh37
▴ 30
6
votes
5
replies
2.8k
views
Mirna Target Prediction
mirna
target
utr
updated 6.1 years ago by
julierey52
• 0 • written 8.9 years ago by
Janake
▴ 170
1
vote
2
replies
1.3k
views
Collection of 5' mRNA ends from human transcriptome
RNA
UTR
5'
Dataset
updated 6.2 years ago by
Devon Ryan
98k • written 6.2 years ago by
surka
• 0
0
votes
1
reply
2.5k
views
using max_target 1,max_hsps 1 for blastn and subsequent compilation of utr files
blast
utr
max_target_seq
max_hsps
updated 6.2 years ago by
mxs
▴ 530 • written 6.2 years ago by
vigneshprbh37
▴ 30
0
votes
1
reply
1.4k
views
UTR region misassembly ?
UTR
RNA-Seq
Assembly
transcriptome
misassembly
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
ascendo.u
▴ 10
0
votes
3
replies
1.6k
views
Any Tool Which Remark The Boundries Like Regulatory, Intron And Exon In Gene Sequence
tool
gene
exon
utr
updated 6.9 years ago by
brentp
23k • written 8.1 years ago by
kumar.vinod81
▴ 300
2
votes
3
replies
3.3k
views
How to define a full-length transcript for transcriptome assembly?
RNA-Seq
UTR
updated 7.0 years ago by
Charles Warden
8.0k • written 7.0 years ago by
Shaojiang Cai
▴ 100
4
votes
3
replies
5.4k
views
Genomic Positions Of 3'Utrs Of Refseq-Genes
refseq
utr
position
updated 7.0 years ago by
dariober
12k • written 7.0 years ago by
syrup16g_TO
▴ 40
64 results • Page
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Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
Comment: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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by
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• 0
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by
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Your github page appears to live here now https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/gxf.md
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you would get the counts as you would get them in any other case, how do you know something maps to chromosome 1 of human genome? Because i…
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