0
votes
0
replies
44
views
0
votes
0
replies
49
views
0
votes
0
replies
60
views
7 days ago by
Adarsh Kuamr
▴
40
3
votes
6
replies
359
views
0
votes
1
reply
101
views
8 days ago by
anithanagaraj93
•
0
0
votes
0
replies
71
views
0
votes
1
reply
113
views
11 days ago by
kartikayprasad
▴
10
0
votes
0
replies
90
views
0
votes
1
reply
173
views
0
votes
0
replies
102
views
0
votes
0
replies
69
views
1
vote
0
replies
81
views
1
vote
2
replies
158
views
0
votes
1
reply
292
views
10
votes
8
replies
11k
views
7 follow
0
votes
0
replies
75
views
1
vote
1
reply
127
views
updated 23 days ago by
Istvan Albert
89k
•
written 23 days ago by
Bertalan_Takacs
•
0
0
votes
3
replies
168
views
0
votes
0
replies
75
views
28 days ago by
najoshi
▴
30
0
votes
0
replies
69
views
1
vote
1
reply
180
views
updated 4 weeks ago by
Zhilong Jia
★
1.9k
•
written 4 weeks ago by
5utr
▴
350
2
votes
2
replies
197
views
5 weeks ago by
quentin54520
•
0
0
votes
1
reply
121
views
2
votes
7
replies
408
views
updated 4 weeks ago by
Kevin Blighe
76k
•
written 5 weeks ago by
VIJITH KUMAR
•
0
2
votes
4
replies
203
views
2
votes
1
reply
3.5k
views
updated 7 weeks ago by
davidc
•
0
•
written 6.5 years ago by
ethan.kaufman
▴
380
0
votes
1
reply
142
views
updated 8 weeks ago by
Pierre Lindenbaum
137k
•
written 8 weeks ago by
soniabedi.07
▴
10
0
votes
1
reply
133
views
updated 9 weeks ago by
Kevin Blighe
76k
•
written 9 weeks ago by
A.Rasa
•
0
9
votes
14
replies
871
views
6 follow
updated 14 days ago by
Zhenyu Zhang
▴
420
•
written 9 weeks ago by
Rick Kim
▴
50
1
vote
3
replies
226
views
2
votes
3
replies
243
views
updated 11 weeks ago by
Kevin Blighe
76k
•
written 11 weeks ago by
Shab86
▴
290
0
votes
1
reply
171
views
updated 11 weeks ago by
Emily_Ensembl
22k
•
written 11 weeks ago by
gdm01
•
0
1
vote
14
replies
714
views
updated 11 weeks ago by
prasundutta87
▴
570
•
written 3 months ago by
shivangi.agarwal800
▴
70
0
votes
2
replies
262
views
0
votes
1
reply
180
views
3 months ago by
jon.klonowski
▴
80
1
vote
0
replies
159
views
4
votes
4
replies
389
views
updated 3 months ago by
Emily_Ensembl
22k
•
written 3 months ago by
robles.daniela
▴
80
0
votes
0
replies
101
views
3 months ago by
cocchi.e89
▴
170
0
votes
3
replies
234
views
1
vote
3
replies
338
views
1
vote
4
replies
450
views
updated 3 months ago by
samuel.a.odonnell
▴
220
•
written 3 months ago by
Hans
▴
120
0
votes
0
replies
148
views
3 months ago by
here_for_learning
•
0
5
votes
3
replies
564
views
1
vote
3
replies
399
views
updated 4 months ago by
Pierre Lindenbaum
137k
•
written 4 months ago by
quentin54520
•
0
2
votes
0
replies
267
views
0
votes
3
replies
256
views
5 months ago by
amy_houseman
▴
20
1
vote
1
reply
228
views
0
votes
3
replies
299
views
0
votes
2
replies
2.6k
views
updated 5 months ago by
Biostar
20
•
written 3.4 years ago by
shubhra.bhattacharya
▴
120
Recent Votes
Recent Locations •
All
United States, just now
Universe, 1 minute ago
Centereach, 3 minutes ago
United States, 3 minutes ago
SouthKorea, 5 minutes ago
United States, 7 minutes ago
United States, 9 minutes ago
Recent Awards •
All
Popular Question to
igor
12k
Popular Question to
GenoMax
104k
Popular Question to
pixie@bioinfo
★
1.4k
Popular Question to
A
★
3.9k
Recent Replies
Comment: problem with no replicate data analysis
by
Bioinformatics1
•
0
it is my pleasure to communicate with you.
Do you have an example of no replicate data for RNA seq analysis to share with me? RNA seq lab …
Comment: Error in plot-vcfstats
by
samuelandjw
▴
80
Install the absent file. See https://pkgs.org/download/tex(memoir.cls)
Comment: Using vcftools and got Error: Unknown option: --max-missing
by
samuelandjw
▴
80
Try bcftools instead. The author of vcftools has ceased updating vcftools for a while.
Answer: [Biopython] endweight, endopen and endextend equivalent for Bio.Align.PairwiseAl
by
Mensur Dlakic
★
12k
Have you tried adding:
aligner.end_open_gap_score = -10
aligner.end_extend_gap_score = -1
Comment: plot-vcfstats
by
samuelandjw
▴
80
Please see my edited answer. If my answer helps you, please consider accepting it.
Comment: how to filter out all the homozygous genotypes in a multi sample VCF file?
by
Nahid Bandi K
•
0
Thank you zengjingyu and @sbstevenlee for your help and explanations. I guess as @sbstevenlee explained if I remove all the homozygous geno…
Comment: Help with Volcano plot
by
Kevin Blighe
76k
Please use *KEGGprofile* (I just posted an answer here: https://support.bioconductor.org/p/9138854/), or some other pathway analysis progra…
Comment: UMI counts and read counts in GeneGlobe output
by
Abhishek
•
0
Thank you for the confirmation.
Would there be any reason the READs columns are provided too ?
I'm thinking maybe for normalizing the UMI…
Comment: problem with no replicate data analysis
by
Gordon Smyth
★
2.9k
Actually I wrote page 24 of the edgeR User's Guide, but I can't give you customized advice specific to your dataset. If you know nothing at…
Comment: problem with no replicate data analysis
by
Bioinformatics1
•
0
Gordon, What do I add instead of the housekeeping index? I only have data, I don't know how to add the housekeeping gene. Please read page …
Answer: problem with no replicate data analysis
by
Gordon Smyth
★
2.9k
The edgeR User's Guide (to which you link) has an entire section called "What to do if you have no replicates". That section enumerates all…
Comment: Help with Volcano plot
by
mshubham
•
0
How can I annotate the pathways associated with the genes labeled above?
Since they are very small set of genes, I only want to annotate t…
Answer: UMI counts and read counts in GeneGlobe output
by
i.sudbery
12k
Your understanding is correct. The reads are the counts of all reads mapping to a given gene. UMIs is the number of distinct UMIs, and ther…
Comment: analyzing cel files
by
Kevin Blighe
76k
New post: https://support.bioconductor.org/p/9138838/
Traffic: 1433 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6