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Showing top results for tag: visualisation • reset
0
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Best way of visualising genetic variation for publication in a gene with many exons
graphs snv lollipop snp Visualisation
15 days ago by tacrolimus ▴ 80
23
votes
9
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3.1k
views
8 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
4 months ago by Joe 19k
0
votes
0
replies
356
views
How to make VAF plot?
genome visualisation
13 months ago by arya.vis • 0
2
votes
0
replies
272
views
Tool: ToolDirectory: dynamic visualization of softwares managed by a Bioinformatics Core Facility
edam visualisation tool Tool
14 months ago by patrick.durand ▴ 140
6
votes
5
replies
379
views
ORF number count/visualisation
orf visualisation numbering
15 months ago by m.halucha • 0
1
vote
3
replies
5.2k
views
Plotting chromosomal data from sliding window analyses
ngs genome R plotting visualisation
updated 16 months ago by ★ 3.1k • written 7.2 years ago by ▴ 340
0
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0
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400
views
Tool: GSOAP: a tool for visualization of gene set over-representation analysis
R visualisation enrichment analysis Tool
17 months ago by tomastokar ▴ 40
0
votes
0
replies
286
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol visualisation python pymol scripting
21 months ago by shome • 0
0
votes
2
replies
1.8k
views
Visualisation of clusters produced by mothur
mothur clustering visualisation qiime
updated 21 months ago by 33k • written 5.1 years ago by ▴ 210
4
votes
5
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3.0k
views
UCSC Viewer : Adjust all tracks on the same scale at the same time.
UCSC viewer visualisation
updated 21 months ago by ▴ 420 • written 4.7 years ago by ▴ 390
0
votes
0
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354
views
Exon phase visualisation tools
exon phase visualisation
22 months ago by oakhamwolf ▴ 20
0
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0
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795
views
Job: Senior Postdoc Bioinformatician @VIB-UGent
visualisation phenotype data 5-year maize sgRNA Job
2.2 years ago by lieven.sterck 12k
8
votes
11
replies
1.6k
views
How to visualize gene structure of a (prokaryotic) locus?
R genome gene visualisation python
updated 2.9 years ago by 33k • written 2.9 years ago by ▴ 90
5
votes
10
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1.2k
views
Simple visual output of Pairwise Sequence alignment
alignment pairwise python sequence visualisation
updated 3.0 years ago by ★ 1.9k • written 3.1 years ago by ▴ 20
2
votes
6
replies
913
views
How to Visulaise Genes per sample (Text visualisation)
Text Visualisation
updated 3.6 years ago by ★ 3.0k • written 3.6 years ago by ▴ 260
0
votes
5
replies
774
views
how to plot unique genes for 103 samples
genes plot Visualisation
3.6 years ago by Kritika ▴ 260
1
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0
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1.3k
views
Job: Developer - Biological Data Visualisation and Interfaces, Healx, Cambridge UK
web development drug repurposing visualisation Job
3.8 years ago by Richard Smith ▴ 400
0
votes
4
replies
2.6k
views
Best tool for Circular genome visualization and labelling the selected genes.
genome visualisation circular view
4.0 years ago by namgyalwangstuklama ▴ 10
1
vote
5
replies
1.3k
views
igv_plotter error, I cannot run igv_plotter on my BAM file, RuntimeError: Xvfb did not start
igv igv_plotter error bam file visualisation
4.0 years ago by cristian ▴ 280
4
votes
3
replies
2.8k
views
Visualising BedGraph files on UCSC [custom tracks]
visualisation bedgraph ucsc genome
updated 4.1 years ago by 2.8k • written 4.1 years ago by ▴ 180
1
vote
2
replies
1.4k
views
Fast visualisation of BLAST search hits' annotations
blast annotation visualisation
updated 4.3 years ago by 137k • written 4.4 years ago by • 0
6
votes
7
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1.9k
views
Job: PhD Studentship in Bioinformatics, developing visualisation and analysis tools for genomic and epigenomic data, Wellington, New Zealand
obesity visualisation PhD position New Zealand Job
updated 4.4 years ago by ▴ 50 • written 4.5 years ago by ▴ 40
2
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2
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1.0k
views
Visual informatics in molecular biology...?
gene visualisation data mining
updated 4.4 years ago by ▴ 30 • written 4.4 years ago by • 0
0
votes
0
replies
2.2k
views
Heatmap re-ordering in plotly
heatmap visualisation
4.5 years ago by Joe 19k
0
votes
2
replies
1.5k
views
UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pair-strand
UCSC IGV visualisation
4.7 years ago by ZheFrench ▴ 390
0
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2
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1.3k
views
Is it correct to merge bigwig with TPM values from rnaSeq from different biological replicates for the same condition ?
RNA-Seq wig bigwg visualisation
updated 4.7 years ago by ★ 1.6k • written 4.7 years ago by ▴ 390
0
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0
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934
views
Are there any .dll libraries for molecule visualisation?
c# .net visualisation
4.8 years ago by Annalischen ▴ 10
1
vote
1
reply
2.1k
views
Compare ChIP-seq data from various experiments
ChIP-Seq Normalize Visualisation
4.8 years ago by bharath.mh24 • 0
2
votes
0
replies
1.3k
views
News: Workshop: Data Manipulation and Visualisation with Python, 5-9 Sep 2016, Edinburgh
workshop visualisation Python News
5.0 years ago by Bert Overduin ★ 3.7k
0
votes
1
reply
1.1k
views
temporary JSON file for visualisation plugin - where to save?
json visualisation temporary files
updated 5.2 years ago by 12k • written 5.2 years ago by • 0
12
votes
16
replies
3.8k
views
CNV Visualization tool
CNV R visualisation
5.4 years ago by thedogwelder2099 ▴ 20
0
votes
0
replies
1.5k
views
Job: Full Stack Web Developer - Cambridge, UK
Jobs Python JavaScript Visualisation
5.7 years ago by Richard Smith ▴ 400
9
votes
8
replies
1.7k
views
What are the best genomic data visualisation tools and APIs (in 2015)?
visualisation
5.8 years ago by bedeabc ▴ 110
3
votes
4
replies
4.7k
views
Python-friendly tools for RNA secondary structure visualisation & manipulation
python secondary structure RNA visualisation
updated 5.9 years ago by 4.9k • written 5.9 years ago by 4.1k
3
votes
7
replies
1.6k
views
How to visualise RNAseq baits in a genomic context
RNA-Seq baits visualisation igv
updated 6.1 years ago by 33k • written 6.1 years ago by ▴ 230
0
votes
2
replies
2.4k
views
Looking for a protein domain visualisation tool
visualisation
updated 6.2 years ago by ★ 1.8k • written 6.2 years ago by ▴ 540
0
votes
0
replies
1.5k
views
Seqmonk to plot feature names
seqmonk sequencing visualisation next generation
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 190
6
votes
6
replies
1.6k
views
Convenient way to visualise a collection of genomic locations
ChIP-Seq visualisation genome browser
updated 6.3 years ago by 7.3k • written 6.3 years ago by ▴ 540
10
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5
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8.2k
views
How do I view the height / distribution of ChIP-seq peaks?
visualisation ChIP-Seq peaks
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ★ 3.1k
19
votes
5
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6.9k
views
Tool: deepTools: user-friendly tools for the normalization and visualization of deep-sequencing data
ChIP-Seq RNA-Seq QC Visualisation Tool
updated 6.7 years ago by ▴ 50 • written 7.2 years ago by ▴ 670
1
vote
2
replies
3.6k
views
How to generate pretty bedgraph tracks ( publication quality)
visualisation bedgraphs
updated 7.0 years ago by 137k • written 7.0 years ago by ▴ 270
41 results • Page 1 of 1
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Answer: Using R in Conda
Comment: Why is WGS/WES depth of Y chromosome highly variable?
The Biostar Handbook. A bioinformatics e-book for beginners.
The Biostar Handbook. A bioinformatics e-book for beginners.
The Biostar Handbook. A bioinformatics e-book for beginners.
Download list of all genes of genome build GRCh38.p0
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
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Comment: Converting gene symbols to protein (uniprot) ids gives multiple matches per gene by cpad0112 16k
source of `hmap_4`? Please post the `str` of hmap_4.
Comment: Plot assigned / unassigned reads distance to 3'UTR by Pierre Lindenbaum 137k
what does `distances.bed` looks like please ?
Comment: Why is WGS/WES depth of Y chromosome highly variable? by German.M.Demidov ★ 2.3k
Correct - could be more frequent for aneuploidies https://www.nature.com/articles/s41586-020-2426-2
Comment: Why is WGS/WES depth of Y chromosome highly variable? by crisime ▴ 240
The paper you shared is detecting CHIP events (SNP/indel) in 18,4% of >90 year old people by looking at just 160 WES genes. So it does not…
Comment: How to plot/combine biological replicates on a genomic features plot for methyla by Papyrus ★ 1.2k
You can take the mean/average to pool the replicates, and it is OK. Nonetheless, you have another option which does not involve losing/pool…
Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id' by cpad0112 16k
`desired_proteins=seq` you are assigning only sequence here.
Comment: How to convert gene names to EC numbers? by lieven.sterck 12k
ok, it has been a while apparently :) it is a two-step procedure, first get the GO-labels from interpro and 'convert' those to EC numbers …
Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id' by Shred ▴ 380
You're passing the wrong object to `SeqIO.write`: it expects a `SeqRecord`, and instead it gets a `Seq` object. [documentation][1] Outp…
Comment: Tools for bulk RNA-seq celltype deconvolution by Papyrus ★ 1.2k
Thank you for the info, I'll be sure to check it out!
Comment: Why is WGS/WES depth of Y chromosome highly variable? by German.M.Demidov ★ 2.3k
It also depends which degree of mosaicism we'd check - I normally check anything happened in >20% of cells. Otherwise it becomes much more …
Comment: BLAST memory usage by reany • 0
How to cache the db into memory? Is there an operable method?
Comment: Reference file for base recalibration by priya.bmg • 0
I figured out that I have to create FASTA reference sequence dictionary file. For creating the dictionary file, the command GATK-Launch doe…
Comment: How to modify dot plot in MUMmer 3 for bacteria comparative genomics? by Manuela ▴ 30
As said in the question post:1. I do not understand how I can modify the gnuplot file since it is generated together with the plot; 2. the …
Comment: Strand specific quantification with strand-splitted BAM files by compuTE ▴ 60
Hi! Thank you so much for your answer! I really appreciate the tutorial you did about filtering alignments by strand :-) Yes, I understand …
Comment: collapsing pacbio reads into a single sequence by Sara ▴ 180
@genomax yes subreads.bam is the input for ccs tool.
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