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Showing top results for tag: visualisation • reset
23
votes
9
replies
2.8k
views
8 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
27 days ago by Joe 19k
0
votes
0
replies
276
views
How to make VAF plot?
genome visualisation
10 months ago by arya.vis • 0
2
votes
0
replies
226
views
Tool: ToolDirectory: dynamic visualization of softwares managed by a Bioinformatics Core Facility
edam visualisation tool Tool
11 months ago by patrick.durand ▴ 140
6
votes
5
replies
312
views
ORF number count/visualisation
orf visualisation numbering
12 months ago by m.halucha • 0
1
vote
3
replies
5.0k
views
Plotting chromosomal data from sliding window analyses
ngs genome R plotting visualisation
updated 13 months ago by ★ 2.9k • written 6.9 years ago by ▴ 340
0
votes
0
replies
349
views
Tool: GSOAP: a tool for visualization of gene set over-representation analysis
R visualisation enrichment analysis Tool
13 months ago by tomastokar ▴ 30
0
votes
0
replies
242
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol visualisation python pymol scripting
17 months ago by shome • 0
0
votes
2
replies
1.8k
views
Visualisation of clusters produced by mothur
mothur clustering visualisation qiime
updated 18 months ago by 32k • written 4.8 years ago by ▴ 210
4
votes
5
replies
2.7k
views
UCSC Viewer : Adjust all tracks on the same scale at the same time.
UCSC viewer visualisation
updated 18 months ago by ▴ 390 • written 4.4 years ago by ▴ 320
0
votes
0
replies
301
views
Exon phase visualisation tools
exon phase visualisation
19 months ago by oakhamwolf ▴ 20
0
votes
0
replies
697
views
Job: Senior Postdoc Bioinformatician @VIB-UGent
visualisation phenotype data 5-year maize sgRNA Job
23 months ago by lieven.sterck 10k
8
votes
11
replies
1.5k
views
How to visualize gene structure of a (prokaryotic) locus?
R genome gene visualisation python
updated 2.6 years ago by 32k • written 2.6 years ago by ▴ 90
5
votes
10
replies
1.1k
views
Simple visual output of Pairwise Sequence alignment
alignment pairwise python sequence visualisation
updated 2.7 years ago by ★ 1.9k • written 2.8 years ago by ▴ 20
2
votes
6
replies
849
views
How to Visulaise Genes per sample (Text visualisation)
Text Visualisation
updated 3.3 years ago by ★ 2.9k • written 3.3 years ago by ▴ 260
0
votes
5
replies
724
views
how to plot unique genes for 103 samples
genes plot Visualisation
3.3 years ago by Kritika ▴ 260
1
vote
0
replies
1.3k
views
Job: Developer - Biological Data Visualisation and Interfaces, Healx, Cambridge UK
web development drug repurposing visualisation Job
3.5 years ago by Richard Smith ▴ 400
0
votes
4
replies
2.4k
views
Best tool for Circular genome visualization and labelling the selected genes.
genome visualisation circular view
3.7 years ago by namgyalwangstuklama ▴ 10
1
vote
5
replies
1.2k
views
igv_plotter error, I cannot run igv_plotter on my BAM file, RuntimeError: Xvfb did not start
igv igv_plotter error bam file visualisation
3.7 years ago by cristian ▴ 260
4
votes
3
replies
2.6k
views
Visualising BedGraph files on UCSC [custom tracks]
visualisation bedgraph ucsc genome
updated 3.8 years ago by 2.8k • written 3.8 years ago by ▴ 180
1
vote
2
replies
1.4k
views
Fast visualisation of BLAST search hits' annotations
blast annotation visualisation
updated 4.0 years ago by 135k • written 4.1 years ago by • 0
6
votes
7
replies
1.8k
views
Job: PhD Studentship in Bioinformatics, developing visualisation and analysis tools for genomic and epigenomic data, Wellington, New Zealand
obesity visualisation PhD position New Zealand Job
updated 4.1 years ago by ▴ 50 • written 4.2 years ago by ▴ 40
2
votes
2
replies
956
views
Visual informatics in molecular biology...?
gene visualisation data mining
updated 4.1 years ago by ▴ 30 • written 4.1 years ago by • 0
0
votes
0
replies
2.1k
views
Heatmap re-ordering in plotly
heatmap visualisation
4.3 years ago by Joe 19k
0
votes
2
replies
1.4k
views
UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pair-strand
UCSC IGV visualisation
4.4 years ago by ZheFrench ▴ 320
0
votes
2
replies
1.2k
views
Is it correct to merge bigwig with TPM values from rnaSeq from different biological replicates for the same condition ?
RNA-Seq wig bigwg visualisation
updated 4.4 years ago by ★ 1.6k • written 4.4 years ago by ▴ 320
0
votes
0
replies
885
views
Are there any .dll libraries for molecule visualisation?
c# .net visualisation
4.5 years ago by Annalischen ▴ 10
1
vote
1
reply
2.0k
views
Compare ChIP-seq data from various experiments
ChIP-Seq Normalize Visualisation
4.5 years ago by bharath.mh24 • 0
2
votes
0
replies
1.3k
views
News: Workshop: Data Manipulation and Visualisation with Python, 5-9 Sep 2016, Edinburgh
workshop visualisation Python News
4.7 years ago by Bert Overduin ★ 3.7k
0
votes
1
reply
1.1k
views
temporary JSON file for visualisation plugin - where to save?
json visualisation temporary files
updated 4.9 years ago by 12k • written 4.9 years ago by • 0
12
votes
16
replies
3.5k
views
CNV Visualization tool
CNV R visualisation
5.1 years ago by thedogwelder2099 ▴ 20
0
votes
0
replies
1.5k
views
Job: Full Stack Web Developer - Cambridge, UK
Jobs Python JavaScript Visualisation
5.4 years ago by Richard Smith ▴ 400
9
votes
8
replies
1.6k
views
What are the best genomic data visualisation tools and APIs (in 2015)?
visualisation
5.5 years ago by bedeabc ▴ 110
3
votes
4
replies
4.5k
views
Python-friendly tools for RNA secondary structure visualisation & manipulation
python secondary structure RNA visualisation
updated 5.6 years ago by 4.9k • written 5.6 years ago by 4.1k
3
votes
7
replies
1.5k
views
How to visualise RNAseq baits in a genomic context
RNA-Seq baits visualisation igv
updated 5.8 years ago by 32k • written 5.8 years ago by ▴ 230
0
votes
2
replies
2.3k
views
Looking for a protein domain visualisation tool
visualisation
updated 6.0 years ago by ★ 1.8k • written 6.0 years ago by ▴ 540
0
votes
0
replies
1.5k
views
Seqmonk to plot feature names
seqmonk sequencing visualisation next generation
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 180
6
votes
6
replies
1.5k
views
Convenient way to visualise a collection of genomic locations
ChIP-Seq visualisation genome browser
updated 6.0 years ago by 6.9k • written 6.0 years ago by ▴ 540
10
votes
5
replies
8.0k
views
How do I view the height / distribution of ChIP-seq peaks?
visualisation ChIP-Seq peaks
updated 6.2 years ago by ★ 2.0k • written 6.2 years ago by ★ 3.1k
19
votes
5
replies
6.8k
views
Tool: deepTools: user-friendly tools for the normalization and visualization of deep-sequencing data
ChIP-Seq RNA-Seq QC Visualisation Tool
updated 6.4 years ago by ▴ 50 • written 6.9 years ago by ▴ 670
1
vote
2
replies
3.5k
views
How to generate pretty bedgraph tracks ( publication quality)
visualisation bedgraphs
updated 6.7 years ago by 135k • written 6.7 years ago by ▴ 270
40 results • Page 1 of 1
Recent Votes
Comment: A simple tutorial for a complex ComplexHeatmap
Answer: Hunting invisible characters?
BWA error: no ID within the read group line
Answer: differential expression analysis
Answer: How to verify putative miRNA
Comment: How to make consensus sequence from aligned reads ?
Answer: GSEA for RNA_seq dataset
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Recent Awards • All
Scholar to Alex Reynolds 32k
Scholar to ivivek_ngs ★ 5.1k
Popular Question to Chaimaa ▴ 250
Oracle to Mensur Dlakic ★ 10k
Popular Question to jaqx008 ▴ 90
Popular Question to sckinta ▴ 610
Popular Question to leesooyeon94 • 0
Recent Replies
Comment: Hunting invisible characters? by geneticatt ▴ 120
Thank you, using `dos2unix` worked perfectly!
Answer: Hunting invisible characters? by Mensur Dlakic ★ 10k
You may want to read [**this**][1]. I think you may be able to fix your adaper file by typing: dos2unix i5R.txt If an error pops …
Comment: RNA seq analysis; two samples by Ram 32k
Please do not delete posts that have comments/answers.
Comment: ICE normalization using JuicerTools by sckinta ▴ 610
Is there a way to extract ICE bias from balanced .cool file? I know that you can find weight associated with each bin by `cooler dump --bal…
Comment: How to verify putative miRNA by boczniak767 ▴ 740
Yeah, miRNA could be only verified in wet-lab. Take a look at [stem-loop PCR][1]. I've used it and it works really well. [1]: https://j…
Comment: R - A bioinformatic analysis programming language for NGS by Ram 32k
Because this is a plain copy-paste from the novogene page, it has numbers (pointers to specific references that the source has), but not th…
Comment: X amino acid in ensembl by Mensur Dlakic ★ 10k
This is correct. `X` means any amino acid. Most substitution matrices apply identical penalty (`-1`) when any amino-acid is aligned with X …
Answer: differential expression analysis by Mensur Dlakic ★ 10k
I think the numbers you cite are the most extreme values that people will still accept. In most cases I would go for lower p-values (at lea…
Comment: Trimmomatic-0.36 not finding adapter directory by willbrown • 0
The two reads are roughly 23GB each, the only other large output file generated in my last attempt was the trimlog file, which was only 1.5…
Comment: A simple tutorial for a complex ComplexHeatmap by ATpoint 48k
You always normalize data before z-scoring it. The Z-score just calculate like the "deviation" of every sample from the mean of all samples…
Answer: GSEA for RNA_seq dataset by ATpoint 48k
I tried to explain my understanding of (f)GSEA and why one should use all (expressed) genes here over at this Bioc post: https://support…
Comment: Trimmomatic-0.36 not finding adapter directory by willbrown • 0
I have re-run Trimmomatic for a few hours now, but still no prompt from the terminal. I included '-threads 8' and so expected it to be some…
Comment: How to perform multiple alignment using MAFFT? by anikcropscience ▴ 40
Ok thanks a lot. I used the `system(paste0("printf \"\n\" >> Alignment_output/temp.fa"))` after the samtools command and the last command i…
Comment: How to perform multiple alignment using MAFFT? by Ram 32k
There are probably a few files that do not have a new line character before the End of File character (the last visible character is a sequ…
Answer: GSEA for RNA_seq dataset by jared.andrews07 9.2k
You should read up about GSEA, it sounds like you don't have a good grasp of what the process involves, which could lead you to misinterpre…
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