Latest
News
Jobs
Tutorials
Forum
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
50 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
Showing top results for tag:
workflow
•
reset
4
votes
4
replies
237
views
TB drug resistance pipeline
genomics
workflow
6 days ago by
Moneeb Bajwa
▴ 10
0
votes
0
replies
93
views
News:
3-day ONLINE TRAINING - NEXTFLOW
pipeline
programming
workflow
cloud
clustering
updated 18 days ago by
GenoMax
99k • written 18 days ago by
carlopecoraro2
★ 2.0k
1
vote
2
replies
195
views
How can I get GTF file for TE annotations from Helicoverpa armigera?
genome
workflow
database
pipeline
21 days ago by
pavelasquezv
▴ 10
0
votes
1
reply
147
views
Identification of plastid derived sequences
workflow
updated 22 days ago by
shelkmike
▴ 420 • written 24 days ago by
wes
▴ 50
5
votes
5
replies
334
views
How can I create a count matrix?
dna
workflow
genome
database
gene
updated 22 days ago by
swbarnes2
9.7k • written 23 days ago by
pavelasquezv
▴ 10
0
votes
2
replies
181
views
What is the best tools for circRNA analysis (extraction and quantification) ?
programming
rna
workflow
22 days ago by
chloelaloe
• 0
0
votes
0
replies
85
views
Motif analysis from the Binding and expression target analysis (BETA) software
workflow
motif
24 days ago by
mwong043
• 0
1
vote
0
replies
98
views
CWL workflow - nested_crossproduct output
CWL
scatter
workflow
nested_crossproduct
29 days ago by
cocchi.e89
▴ 140
0
votes
1
reply
182
views
How do I organize snakemake when not all jobs successfully output files from previous rule?
snakemake
workflow
python
6 weeks ago by
timothy.delory
▴ 20
0
votes
0
replies
133
views
News:
3-day ONLINE TRAINING - NEXTFLOW
Nextflow
workflow
Bioinformatics
News
8 weeks ago by
carlopecoraro2
★ 2.0k
3
votes
2
replies
179
views
Understanding Resource Job Allocation
snakemake
slurm
memory
workflow
updated 10 weeks ago by
i.sudbery
11k • written 10 weeks ago by
timothy.delory
▴ 20
34
votes
30
replies
564
views
6 follow
Tool:
BioFlows - Container-enabled Bioinformatics pipeline engine
pipeline
bioinformatics
RNA-Seq
workflow
next-gen
Tool
updated 23 days ago by
Ram
32k • written 4 months ago by
mfawzy.sami
▴ 80
2
votes
0
replies
202
views
How to Rename WDL/Cromwell output folders
Cromwell
wdl
workflow
pipeline
NGS
4 months ago by
pacman
▴ 70
3
votes
2
replies
201
views
Wes analysis - Quality control on sequenced data
wes
quality control
exome
workflow
updated 4 months ago by
JC
12k • written 4 months ago by
AndreaSibi
• 0
80
votes
6
replies
13k
views
6 follow
Tutorial:
Creating workflows with snakemake and conda
snakemake
conda
workflow
Tutorial
updated 5 months ago by
psschlogl
▴ 30 • written 2.6 years ago by
finswimmer
14k
0
votes
0
replies
261
views
Suggestion for workflow to predict pathogenicity of SNV and INDELs
machine learning
python
pathogenicity
SVM
workflow
6 months ago by
luffy
▴ 20
0
votes
0
replies
282
views
Galaxy workflow concatenate
Galaxy
workflow
fastqc
multiqc
6 months ago by
avelarbio46
▴ 10
42
votes
19
replies
5.1k
views
7 follow
Makefile-Driven Workflows And Bioconductor Objects
r
bioconductor
workflow
pipeline
file
updated 10 months ago by
Biostar
20 • written 8.2 years ago by
gbayon
▴ 160
1
vote
1
reply
259
views
How to set AWS_BATCH_JOB_ATTEMPT value when using curl to submit cromwell jobs to batch?
wdl
cromwell
workflow
aws-batch
11 months ago by
alexandriapinto1
• 0
0
votes
2
replies
446
views
How do you get input files to a cromwell server
cromwell
wdl
widdle
workflow
updated 11 months ago by
vdauwera
★ 1.0k • written 11 months ago by
Irsan
★ 7.3k
8
votes
7
replies
569
views
Snakemake flow variantion
snakemake
python
automatization
workflow
updated 12 months ago by
russhh
5.5k • written 12 months ago by
effidotpy
▴ 20
1
vote
1
reply
2.2k
views
Snakemake wildcards: Not all output, log and benchmark files of rule sortBAM_bbb contain the same wildcards.
RNA-Seq
workflow
snakemake
wildcards
sortBAM
updated 14 months ago by
ale_abd
▴ 40 • written 15 months ago by
whelenakanya
• 0
2
votes
0
replies
225
views
News:
2-day Nextflow training course in Berlin
nextflow
workflow
News
15 months ago by
carlopecoraro2
★ 2.0k
0
votes
1
reply
360
views
Small demo bioinformatics workflows which don't require reference data?
pipeline
workflow
bioinformatics
updated 18 months ago by
Biostar
20 • written 19 months ago by
steve
★ 2.9k
3
votes
0
replies
537
views
News:
Nextflow Training Course
Pipeline
NEXTFLOW
Workflow
News
updated 18 months ago by
ATpoint
48k • written 18 months ago by
carlopecoraro2
★ 2.0k
2
votes
1
reply
513
views
CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
cwl
workflow
updated 18 months ago by
Michael R. Crusoe
★ 1.8k • written 19 months ago by
Linda
• 0
7
votes
11
replies
3.0k
views
Tips to build a protein network
proteomic
network
workflow
updated 20 months ago by
Biostar
20 • written 4.1 years ago by
benoahb
▴ 40
11
votes
6
replies
2.7k
views
Pegasus Vs Taverna
workflow
updated 20 months ago by
Biostar
20 • written 9.1 years ago by
Jeremy Leipzig
20k
7
votes
4
replies
536
views
Perform one basecommand fot multiple files and get output for each file in CWL
CWL
Pipeline
Workflow
updated 22 months ago by
Tom
▴ 530 • written 22 months ago by
mariafirulevabio
▴ 40
3
votes
5
replies
878
views
CWL join two dimensional file array output
cwl
workflow
scatter
updated 23 months ago by
Tom
▴ 530 • written 23 months ago by
silverspanch
▴ 20
4
votes
1
reply
557
views
ExpressionTool failing after a scatter: How do I debug the Javascript?
cwl
workflow
javascript
expressiontool
2.1 years ago by
alanh
▴ 110
3
votes
2
replies
833
views
Forum:
Popularity of workflow systems
snakemake
nextflow
workflow
Forum
2.3 years ago by
WouterDeCoster
45k
0
votes
0
replies
554
views
PubSub or workflows or both?
workflow
pubsub
events
python
2.4 years ago by
syntax
▴ 60
30
votes
15
replies
8.6k
views
7 follow
Tool:
Snakemake--Python-Based Workflow Management
workflow
python
Tool
updated 2.5 years ago by
carlopecoraro2
★ 2.0k • written 7.4 years ago by
Sean Davis
26k
7
votes
4
replies
1.3k
views
Forum:
I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
galaxy
workflow
Forum
updated 2.5 years ago by
Medhat
8.9k • written 2.5 years ago by
dego999
• 0
1
vote
6
replies
2.8k
views
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
ChIP-Seq
MACS
LAMBDA
workflow
Forum
updated 2.6 years ago by
zx8754
10k • written 6.4 years ago by
christopher.paran
• 0
3
votes
3
replies
1.9k
views
Anyone Using Jboss Drools ?
workflow
updated 2.6 years ago by
Ram
32k • written 10.8 years ago by
Pierre Lindenbaum
135k
0
votes
2
replies
745
views
CWL Error Empty Scatter
CWL
Workflow
Pipeline
Scatter
2.6 years ago by
HL
• 0
0
votes
1
reply
1.1k
views
Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws
workflow
snakemake
cfncluster
reflow
updated 2.7 years ago by
btsui
▴ 290 • written 2.7 years ago by
isaacyho
• 0
0
votes
2
replies
1.1k
views
Recent metatranscriptomics workflow
metatranscriptomics
workflow
kallisto
2.8 years ago by
dark.lord
▴ 30
5
votes
4
replies
3.9k
views
Gatk Pipeline: Markduplicates At The End ?
gatk
next-gen
bam
markduplicates
pipeline
workflow
duplicates
updated 3.5 years ago by
Biostar
20 • written 8.4 years ago by
Pierre Lindenbaum
135k
21
votes
8
replies
7.8k
views
7 follow
Free Alternatives To Pipeline Pilot
open
pipeline
workflow
updated 3.6 years ago by
Biostar
20 • written 10.3 years ago by
Flow
★ 1.5k
3
votes
2
replies
1.5k
views
Filter by multiple columns above count threshold in R
RNA-seq
workflow
updated 4.0 years ago by
Michael Dondrup
48k • written 4.0 years ago by
datascientist28
▴ 470
104
votes
21
replies
16k
views
19 follow
Why Should I Use Galaxy ?
galaxy
workflow
4.0 years ago by
Pierre Lindenbaum
135k
3
votes
3
replies
2.0k
views
CWL: How to parse output of steps in workflow
cwl
workflow
4.0 years ago by
jeltje.van.baren
▴ 80
0
votes
0
replies
930
views
From GEO Illumina array to annotated expression table
geo
annotation
gene expression
workflow
4.1 years ago by
jiab
▴ 50
97
votes
24
replies
13k
views
16 follow
Workflow management software for pipeline development in NGS
workflow
pipeline
workflows
pipe
updated 4.2 years ago by
egafni
▴ 30 • written 6.5 years ago by
michaelberinski
▴ 300
0
votes
0
replies
1.2k
views
Query processing Illumina Expression Microarray
microarray
workflow
llumina
4.3 years ago by
macmath
▴ 140
0
votes
2
replies
1.4k
views
Metagenomic shotgun sequence analysis- optimal approach
metagenomics
workflow
shotgun
updated 4.4 years ago by
dago
★ 2.7k • written 4.4 years ago by
deni.ribicic
• 0
1
vote
1
reply
1.2k
views
Join, Subtract and Group: Compare using dataset lists
Compare
workflow
dataset list
updated 4.7 years ago by
GouthamAtla
11k • written 4.7 years ago by
khaynes
▴ 40
50 results • Page
1 of 1
Recent Votes
Comment: R command worked yesterday, but stalls today?
Answer: R command worked yesterday, but stalls today?
Comment: How to combine 2 incomplete GTF
Answer: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or
Comment: How can I Extract Transposable element from a new genome assembly?
Answer: How to combine 2 incomplete GTF
Answer: How to combine 2 incomplete GTF
Recent Locations •
All
Turkey,
just now
USA,
1 minute ago
United States,
1 minute ago
EMBL Heidelberg / de.NBI,
1 minute ago
Frankrike,
2 minutes ago
Memphis, TN,
2 minutes ago
Germany,
3 minutes ago
Recent Awards •
All
Popular Question
to
marongiu.luigi
▴ 560
Teacher
to
JC
12k
Commentator
to
Nicolas Rosewick
9.3k
Voter
to
cmo
▴ 70
Scholar
to
Juke34
★ 5.3k
Student
to
rafaelsolersanblas
▴ 70
Teacher
to
Michael Dondrup
48k
Recent Replies
Comment: how to select peaks at not transcribed genes
by
jared.andrews07
9.3k
In that case, wouldn't you consider all peaks to be associated with transcription? Even if your 232 peaks are not associated with genes, th…
Answer: Filter contig fasta file by GC content
by
GenoMax
99k
Try the following. seqkit fx2tab --name --only-id --gc contigs.fa | awk -F "\t" '{if ($2 < 35) print $1}' | xargs -n 1 sh -c 'seqki…
Comment: how to select peaks at not transcribed genes
by
Lila M
▴ 910
indeed, my IP was for Pol2
Comment: R command worked yesterday, but stalls today?
by
dariober
12k
...besides, [wget](https://www.gnu.org/software/wget/manual/wget.html) has a `-c/--continue` option to resume the download of a partial fil…
Comment: how to select peaks at not transcribed genes
by
jared.andrews07
9.3k
What makes you think genes with a peak are transcribed while those without are not? Unless your IP was for Pol2, this is an overly simplist…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Thank you! I am going to try it :)
Comment: How to combine 2 incomplete GTF
by
GenoMax
99k
Please create a new environment when installing packages. That avoids conflicts. conda create -c bioconda -n agat agat conda acti…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Hi Juke, I am trying to install it and I can't. ![enter image description here][1] [1]: /media/images/bc08978b-10f7-4666-b385-57807b…
Comment: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or
by
cmo
▴ 70
I agree with you, Mensur, that the GTDB is arguably more reliable and comprehensive than NCBI. However, due to the relative greater longevi…
Comment: how to select peaks at not transcribed genes
by
Lila M
▴ 910
rigth, it is a ChIP seq analysis
Comment: how to select peaks at not transcribed genes
by
ATpoint
48k
Which type data are we talking about? What was the experiment? There are literally no details in this question right now. It the assay meas…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Thank yo so much Juke!
Comment: MASURCA output
by
kilcdincer
▴ 10
Thank you. I understood ploidy part. My genome is supposed to belong to diploid Candida albicans. And genome size of diploid Candida alb…
Answer: How to combine 2 incomplete GTF
by
Juke34
★ 5.3k
To give more precision to the @genomax comment: `agat_sp_compare_annotations.pl` will tell you the differences. Then you can choose to …
Comment: GSEA for RNA_seq dataset
by
ATpoint
48k
No problem. I am not really familiar with what the GSEA implementation from the Broad institute does. I personally use fgsea from Bioconduc…
Traffic: 2350 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6