User: st.ph.n

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st.ph.n730
Reputation:
730
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Trusted
Location:
Philadelphia, PA
Last seen:
11 hours ago
Joined:
3 years, 3 months ago
Email:
t*******@temple.edu

Posts by st.ph.n

<prev • 283 results • page 1 of 29 • next >
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Comment: C: Number of Threads for BWA MEM
... If your machine/cluster can support it, using many threads with `-t` should be fine. ...
written 6 days ago by st.ph.n730
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Comment: C: Processing of assembled transcriptome
... From the remaining isoforms, check and see how many [full length transcripts][1] you have. [1]: https://github.com/trinityrnaseq/trinityrnaseq/wiki/Counting-Full-Length-Trinity-Transcripts ...
written 6 days ago by st.ph.n730
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Comment: C: SPAdes: <jemalloc>: Error in malloc(): out of memory
... Can you show the command you used, that gave you the error? ...
written 6 days ago by st.ph.n730
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Comment: C: Getting sequences from a fasta file.
... Did you trying anything? This type of question has been asked and answered, many times. Why do you want to use bioperl? ...
written 7 days ago by st.ph.n730
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Comment: C: makeblastdb doesn't create database output
... double check that your input file is in fasta format. You can use `-input_type fasta` to specify, and also if you have long enough headers to parse. ...
written 10 days ago by st.ph.n730
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Comment: C: makeblastdb doesn't create database output
... Your database file should be here: `/Users/user/Documents/BLAST/ncbi-blast-2.6.0+/bin/UNITE_ITS.fasta` This also isn't the first time you've run this command with this output name, because the previous version was replaced: `Deleted existing Nucleotide BLAST database named /Users/user/Documents/BL ...
written 10 days ago by st.ph.n730
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Comment: C: species abundacy calculation
... What type of data are your fastq? ...
written 13 days ago by st.ph.n730
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Comment: C: Rearranging order of descriptors in fasta file header
... No, WouterDeCoster. Sorry, I hit reply on your comment instead of comment on the OP. ...
written 14 days ago by st.ph.n730
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Comment: C: Rearranging order of descriptors in fasta file header
... Try something. If it doesn't work, post the code you used in your original question with any error messages. Then, hopefully someone can help. If it does work, answer your question to show what you did. ...
written 14 days ago by st.ph.n730
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Answer: A: Supress/silence warnings from BioPython
... python -W ignore your_script.py ...
written 17 days ago by st.ph.n730

Latest awards to st.ph.n

Scholar 21 days ago, created an answer that has been accepted. For A: Using Trinity with case/control data
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: single line fasta to mult line fasta
Scholar 9 weeks ago, created an answer that has been accepted. For A: Using Trinity with case/control data
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Scholar 9 months ago, created an answer that has been accepted. For A: Using Trinity with case/control data
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: single line fasta to mult line fasta
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Centurion 11 months ago, created 100 posts.
Popular Question 12 months ago, created a question with more than 1,000 views. For Printing Out Hash (Dictionary) Using Hash Class Python
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