User: isp2

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isp20
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Why Ts/Tv Decreases With High Mq Values?
... Hello, I've aligned my pair-end 100nt reads to the reference using BWA and called SNPs using GATK. When I looked into the mapping quality distribution of the SNPs and into its relation to Ts/Tv, I found that low (<4) and high (>50) MQ corresponds to low Ts/Tv. I understand that low MQ implies ...
alignment snps written 6.3 years ago by isp20

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